Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009265

Physical Location & Seq

Genomic Coordinates Forward (+)

719616 .. 723079

Gene Structure 3464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01180.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCTAGCAAACTAGCCTTCACCCTAGTAGCTCCTACTCGCTCTACTACTACTACTACTAATCCTTCTATTCAGAGACCCTTTGTTTCAGTTTCGTCTTCCTCCACCAGAGTTCAGTCGTTTCAGTTCGGCGGCCGGCAGCTCTGCGTACGACGTCGTTTGCTCGTGATTCCCTCTAAGGCTGCCGCCGACAAACAGCAAGGAAATGAGGACGTTGTTGATGGTAACGTCCTGCCATACTGTAGCATAGACAAGAAGCAGAAGAAGTCATTGGGAGAAATGGAACAAGACTTTCTTCAAGCACTACAATCATTTTATTATGATGGAAAAGCTATTATGTCAAATGAGGAATTTGATATTCTCAAGGAAGAGCTAATGTGGGAAGGCAGCAGCGTTGTCATGCTAAGTTCTGATGAACAGAAGTTTTTGGAAGCTTCAATGGCCTATGTGTCTGGGAAACCAATTTTGAGCGACAAAGAGTTTGATGAATTGAAGATGAGACTAAAGGAGCAAGGGAGTGATATTGTCGTTGAGGGTCCCAGATGCAGTCTCCGTACTAGAAAGGTTTACAGTGATCTGTCTGTTGACTATTTGAAGATGCTTCTGCTGAATGTCCCAGCCACTGTTGTTGCCTTAGGATTGTTTTTCTTCTTGGATGATCTCACTGGTTTTGAAATCACATATCTTTTGGAGCTCCCAGAACCATTCAGCTTCATCTTCACATGGTTTGCTGCCGTGCCAGTCATAGTTTATCTAGCCACACAACTCACCAAACTTATTGTCAAGGATGTTCTGATCTTAAAGGGCCCTTGTCCAAACTGTGGTACAGAGAATCAGTCATTCTTTGGGTCGATACTATCGATTTCGAACGGTGGTACTACCAACAACTTAAAGTGCTCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016730 GO:0019684 GO:0019904 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.53

Weight (kDa)

5.5

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11960 AT4G11960 AT4G22890 AT4G22890 AT4G22890 AT4G22890 AT4G22890
fragaria_vesca	FvH4_5g01180 FvH4_5g01180
malus_domestica	MD04G1071000.v1.1
prunus_persica	Prupe.5G086900_v2.0.a1
pyrus_communis	pycom04g06420
rosa_chinensis	RchiOBHm_Chr7g0199911
rosa_laevigata	RLG00000003760
rosa_multiflora	Rmu_sc0002748.1_g000009
rosa_roxburghii	Rroxscaffold_3G00256380
rosa_rugosa	Rorug07G0057000
rosa_samantha	Rh7AG182400 Rh7BG185300 Rh7CG191900 Rh7DG185200
rosa_wichuraiana	Rw7G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	157
AccB7I	CCANNNNNTGG	1 cut(s)	821
AciI	CCGC	2 cut(s)	132, 186
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	154
AfaI	GTAC	4 cut(s)	150, 556, 826, 877
AfiI	CCNNNNNNNGG	1 cut(s)	821
AgsI	TTSAA	5 cut(s)	299, 438, 493, 595, 674
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	7 cut(s)	32, 142, 332, 373, 434, 694, 711
AluI	AGCT	7 cut(s)	32, 142, 332, 373, 434, 694, 711
Alw21I	GWGCWC	2 cut(s)	696, 899
Alw26I	GTCTC	3 cut(s)	70, 493, 554
AlwNI	CAGNNNCTG	1 cut(s)	623
AoxI	GGCC	3 cut(s)	133, 441, 805
ApaI	GGGCCC	1 cut(s)	809
ApeKI	GCWGC	5 cut(s)	139, 182, 387, 390, 731
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	4 cut(s)	464, 496, 765, 797
AspS9I	GGNCC	3 cut(s)	536, 805, 806
AsuHPI	GGTGA	2 cut(s)	13, 760
AsuII	TTCGAA	1 cut(s)	866
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	536
AxyI	CCTNAGG	1 cut(s)	634
BaeGI	GKGCMC	1 cut(s)	809
BanII	GRGCYC	2 cut(s)	696, 809
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	2 cut(s)	696, 899
BbvI	GCAGC	5 cut(s)	151, 169, 399, 402, 718
BccI	CCATC	2 cut(s)	215, 317
BceAI	ACGGC	1 cut(s)	719
BcoDI	GTCTC	3 cut(s)	70, 493, 554
BfaI	CTAG	5 cut(s)	6, 14, 26, 558, 755
BfmI	CTRYAG	1 cut(s)	241
BisI	GCNGC	7 cut(s)	133, 140, 183, 186, 388, 391, 732
BlsI	GCNGC	7 cut(s)	134, 141, 184, 187, 389, 392, 733
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	3 cut(s)	536, 805, 806
BmiI	GGNNCC	3 cut(s)	537, 538, 807
BmsI	GCATC	2 cut(s)	533, 588
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	866
BpuEI	CTTGAG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	860
BsaHI	GRCGYC	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	670, 740
Bse21I	CCTNAGG	1 cut(s)	634
BseCI	ATCGAT	1 cut(s)	860
BseGI	GGATG	2 cut(s)	661, 793
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseNI	ACTGG	2 cut(s)	670, 740
BseSI	GKGCMC	1 cut(s)	809
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	5 cut(s)	151, 169, 399, 402, 718
BseYI	CCCAGC	1 cut(s)	616
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	3 cut(s)	135, 443, 807
BshVI	ATCGAT	1 cut(s)	860
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	696, 899
BsiSI	CCGG	1 cut(s)	136
BsiWI	CGTACG	1 cut(s)	148
BslFI	GGGAC	2 cut(s)	522, 599
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmAI	GTCTC	3 cut(s)	70, 493, 554
BsmFI	GGGAC	2 cut(s)	522, 599
BsnI	GGCC	3 cut(s)	135, 443, 807
Bso31I	GGTCTC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	866
Bsp120I	GGGCCC	1 cut(s)	805
Bsp1286I	GDGCHC	3 cut(s)	696, 809, 899
Bsp143I	GATC	3 cut(s)	574, 658, 795
BspACI	CCGC	2 cut(s)	132, 186
BspANI	GGCC	3 cut(s)	135, 443, 807
BspDI	ATCGAT	1 cut(s)	860
BspLI	GGNNCC	3 cut(s)	537, 538, 807
BspOI	GCTAGC	1 cut(s)	9
BspQI	GCTCTTC	1 cut(s)	363
BspT104I	TTCGAA	1 cut(s)	866
BspTNI	GGTCTC	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	670, 740
BssAI	RCCGGY	1 cut(s)	135
BssMI	GATC	3 cut(s)	574, 658, 795
BssNI	GRCGYC	1 cut(s)	154
BssSI	CACGAG	1 cut(s)	164
Bst2BI	CACGAG	1 cut(s)	164
Bst4CI	ACNGT	5 cut(s)	242, 572, 625, 821, 872
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	154
BstBI	TTCGAA	1 cut(s)	866
BstC8I	GCNNGC	2 cut(s)	7, 137
BstDEI	CTNAG	3 cut(s)	177, 404, 634
BstF5I	GGATG	2 cut(s)	661, 793
BstKTI	GATC	3 cut(s)	577, 661, 798
BstMAI	GTCTC	3 cut(s)	70, 493, 554
BstMBI	GATC	3 cut(s)	574, 658, 795
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstSFI	CTRYAG	1 cut(s)	241
BstSLI	GKGCMC	1 cut(s)	809
BstV1I	GCAGC	5 cut(s)	151, 169, 399, 402, 718
BstV2I	GAAGAC	1 cut(s)	90
BstZI	CGGCCG	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	860
Bsu36I	CCTNAGG	1 cut(s)	634
BsuRI	GGCC	3 cut(s)	135, 443, 807
BsuTUI	ATCGAT	1 cut(s)	860
BtsCI	GGATG	2 cut(s)	661, 793
BtsIMutI	CAGTG	3 cut(s)	577, 621, 663
Cac8I	GCNNGC	2 cut(s)	7, 137
CaiI	CAGNNNCTG	1 cut(s)	623
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	3 cut(s)	536, 805, 806
ClaI	ATCGAT	1 cut(s)	860
Csp6I	GTAC	4 cut(s)	149, 555, 825, 876
CspCI	CAANNNNNGTGG	2 cut(s)	610, 645
CviAII	CATG	2 cut(s)	400, 723
CviQI	GTAC	4 cut(s)	149, 555, 825, 876
DdeI	CTNAG	3 cut(s)	177, 404, 634
DpnI	GATC	3 cut(s)	576, 660, 797
DpnII	GATC	3 cut(s)	574, 658, 795
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	694
EclXI	CGGCCG	1 cut(s)	133
Eco24I	GRGCYC	2 cut(s)	696, 809
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	536
Eco52I	CGGCCG	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	694
Eco81I	CCTNAGG	1 cut(s)	634
EcoICRI	GAGCTC	1 cut(s)	694
EcoO109I	RGGNCCY	3 cut(s)	536, 805, 806
EcoT38I	GRGCYC	2 cut(s)	696, 809
FaeI	CATG	2 cut(s)	403, 726
FaiI	YATR	9 cut(s)	238, 248, 321, 338, 401, 447, 682, 724, 746
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FaqI	GGGAC	2 cut(s)	522, 599
FatI	CATG	2 cut(s)	399, 722
Fnu4HI	GCNGC	7 cut(s)	133, 140, 183, 186, 388, 391, 732
FokI	GGATG	2 cut(s)	668, 800
FriOI	GRGCYC	2 cut(s)	696, 809
Fsp4HI	GCNGC	7 cut(s)	133, 140, 183, 186, 388, 391, 732
FspBI	CTAG	5 cut(s)	6, 14, 26, 558, 755
GluI	GCNGC	7 cut(s)	133, 140, 183, 186, 388, 391, 732
GsaI	CCCAGC	1 cut(s)	620
HaeIII	GGCC	3 cut(s)	135, 443, 807
HapII	CCGG	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	154
Hin1II	CATG	2 cut(s)	403, 726
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	2 cut(s)	169, 832
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	2 cut(s)	13, 760
Hpy166II	GTNNAC	2 cut(s)	568, 586
Hpy188I	TCNGA	3 cut(s)	75, 412, 795
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	2 cut(s)	568, 586
Hpy99I	CGWCG	2 cut(s)	156, 159
HpyAV	CCTTC	3 cut(s)	28, 75, 377
HpyCH4III	ACNGT	5 cut(s)	242, 572, 625, 821, 872
HpyCH4IV	ACGT	3 cut(s)	154, 213, 228
HpyCH4V	TGCA	1 cut(s)	546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	3 cut(s)	177, 404, 634
HpySE526I	ACGT	3 cut(s)	154, 213, 228
Hsp92I	GRCGYC	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	403, 726
KflI	GGGWCCC	1 cut(s)	536
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
Kzo9I	GATC	3 cut(s)	574, 658, 795
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	4 cut(s)	37, 508, 691, 699
LpnPI	CCDG	9 cut(s)	121, 149, 245, 438, 553, 630, 651, 711, 753
Lsp1109I	GCAGC	5 cut(s)	151, 169, 399, 402, 718
LweI	GCATC	2 cut(s)	533, 588
MaeI	CTAG	5 cut(s)	6, 14, 26, 558, 755
MaeII	ACGT	3 cut(s)	154, 213, 228
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	3 cut(s)	576, 660, 797
MboI	GATC	3 cut(s)	574, 658, 795
MboII	GAAGA	8 cut(s)	90, 274, 287, 380, 505, 607, 640, 709
MhlI	GDGCHC	3 cut(s)	696, 809, 899
MluCI	AATT	3 cut(s)	350, 462, 488
MnlI	CCTC	5 cut(s)	112, 184, 202, 340, 526
MroNI	GCCGGC	1 cut(s)	135
MseI	TTAA	2 cut(s)	800, 890
MspI	CCGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	440
NaeI	GCCGGC	1 cut(s)	137
NdeII	GATC	3 cut(s)	574, 658, 795
NgoMIV	GCCGGC	1 cut(s)	135
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	403, 726
NlaIV	GGNNCC	3 cut(s)	537, 538, 807
NspV	TTCGAA	1 cut(s)	866
PciSI	GCTCTTC	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	857
PdiI	GCCGGC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	169, 832
Pfl23II	CGTACG	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	821
PkrI	GCNGC	7 cut(s)	134, 141, 184, 187, 389, 392, 733
PpuMI	RGGWCCY	1 cut(s)	536
Psp124BI	GAGCTC	1 cut(s)	696
Psp5II	RGGWCCY	1 cut(s)	536
PspFI	CCCAGC	1 cut(s)	616
PspLI	CGTACG	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	537, 538, 807
PspOMI	GGGCCC	1 cut(s)	805
PspPI	GGNCC	3 cut(s)	536, 805, 806
PspPPI	RGGWCCY	1 cut(s)	536
PstNI	CAGNNNCTG	1 cut(s)	623
RsaI	GTAC	4 cut(s)	150, 556, 826, 877
RsaNI	GTAC	4 cut(s)	149, 555, 825, 876
SacI	GAGCTC	1 cut(s)	696
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	800, 890
SatI	GCNGC	7 cut(s)	133, 140, 183, 186, 388, 391, 732
Sau3AI	GATC	3 cut(s)	574, 658, 795
Sau96I	GGNCC	3 cut(s)	536, 805, 806
SduI	GDGCHC	3 cut(s)	696, 809, 899
SfaNI	GCATC	2 cut(s)	533, 588
SfcI	CTRYAG	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	866
SinI	GGWCC	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	350, 462, 488
SsiI	CCGC	2 cut(s)	132, 186
SspMI	CTAG	5 cut(s)	6, 14, 26, 558, 755
SstI	GAGCTC	1 cut(s)	696
TaaI	ACNGT	5 cut(s)	242, 572, 625, 821, 872
TaiI	ACGT	3 cut(s)	157, 216, 231
TaqI	TCGA	3 cut(s)	851, 860, 866
TasI	AATT	3 cut(s)	350, 462, 488
TauI	GCSGC	2 cut(s)	135, 188
TfiI	GAWTC	2 cut(s)	169, 832
Tru1I	TTAA	2 cut(s)	800, 890
Tru9I	TTAA	2 cut(s)	800, 890
TscAI	CASTG	3 cut(s)	577, 628, 670
TseI	GCWGC	5 cut(s)	139, 182, 387, 390, 731
TspDTI	ATGAA	3 cut(s)	429, 501, 703
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	3 cut(s)	577, 628, 670
Van91I	CCANNNNNTGG	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	1 cut(s)	350
XspI	CTAG	5 cut(s)	6, 14, 26, 558, 755
ZraI	GACGTC	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.