Rorug07G0057000

Histone deacetylase complex subunit SAP18-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005137
Physical Location & Seq
Forward (+)
4117845 .. 4121680
3836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0057000.1

Sequence Viewer

Length: 2772 bp
ATGTATCCTGTTAATTATAGTGTGGGTGTGGTTCTTAACTTTGACACTGGGTTTGGAAAGATGGGGATGAGCTGCATCGACATGGCCCTATTGGACTGGTATGCTTCACATCCGAATTACAATACGAGGCTCCTTCTGCACCAAAGGAACTCCCCCTCTGATGTTGTTCTTTCAGCTGCTGCAGCTCTTGACCTGATAAAGAATGTTGAAGTGCAAGCCATCGTAGGCCCTGCGTCATCAATGCAGGCCAACTTCATGATCAATCTAGGAGACAAAGCACATGTCCCCATAATCTCATTTTCAGCAACAAGCCCTTCTCTAACTTCAATTCGGAGCCCATATTTCTTTCGAGCTGCACAAAATGACTCGTCTCAGGTGAAAGTCATAAGCGATATCATTCAAGCATTTGGTTGGAGACAAGTAGTCCCCATGTACGTCGACAATGAGTTTGGAGAAGGAGTAATCCCTTACCTCTCCGACGCTCTACAAGAGATTGATGTTCGAATCCCTTATCGGAGTGTTATTTCCCCAACTGCCACCGATGACCAAATTGAAGCTGAGCTTTATAAGTTGGTGACAATGCAAACAAGGGTCTTCATTGTCCACATGTTACCTTCATTAGGTTCTCGAATTTTTGAGAAAGCAAAAGAGATTGGGATGATGGATAAAGGTTATGTTTGGATAGTGACCAATGGAATTTCTAACGTGTTTGGTTCGTTTAATTCATCTTTTGTCACGGAAAACATGCAAGGGGTGTTGGGTTTAAAAACCCATGTCCCAAATAAGAAAAAGCTTGAGGCTTTCAGAGTAAGATGGAAAAAGAAATTTCGACAAGACAATCCAACTGCCATTAATGTGAATTTGGATGTGTTTGGATTGTGGGCTTATGATGCTGCCAAGGCACTAGCCATAGCAGTGGAGAAGGTTGGGAGTACTAAAACCTTCACCTACCAAAAGATGAATGTTTCTGGTAGCTCCAATGATTTAGAGAGATTCGGTGTCTCTCTGATTGGTCCTCAACTTGTCCAAGAGTTGCTAGGTACAAGTTTCCGAGGGCTTTCAGGGGACTTTAGTCTTGTTAATGGGCAACTTCCATCTTCAACTTTTGAGATTGTGAATGTGATTGGAACTGGAGAAAATGTGGTTGGATTTTGGACACCTGAAAACGGACTAGTGAGAAACTTGCATTCCACAAAGAGCATAAGCAGATCTTCTGCTTCTAATGCTAGTCTTGGATCGATTATATGGCCCGGAGACACCTCCTCTGCTCCAAAAGGTTGGCAGATTCCTACTAATGGGAAAAAGTTGAAGATTCTAGTTCCACTTAAAGATGGGTATAATGAATTTGTGAATGTGACATATGATACTAGCACTAACAAAACCAAGGTCATTGGTGGATACTGCTTAGAAGTCTTTGAAGCTGTAAGAAAAGCATTGCCTTATGATATCTCTTATGAGTTCTATGCTTATGCAAAGCCTGATGGTGAAACTGCTGGTAGTTACAATGATTTGGTCAACCAAGTGTTTTTAGGGAACTATGATGCTGCGGTGGGAGATATAACCATAAGAGCAAACAGGTCCTTGTATGTGGACTTCACATTGCCATACACAGAATCTGGGGTATCCATGATCGTGCCTATTGAAGACAATAAAAGTAAGAACGCTTGGGTGTTCTTGGAGCCTTTGACTTGGGATCTTTGGTTAACAACCGGCTGTTTTTTCATATTCATTGGTTTTGTGGTCTGGGTTCTTGAACACCGGATTAACGAGGATTTTCGAGGACCTATAAGCTACCAAGTTGGCACGAGTTTTTGGTTCGCTTTCTCAACCATGGTTTTTGCACATAGGGAGCGAGTGGTTAGCAACTTGGCTAGGTTCGTAGTGGTCATATGGTGCGTGGTAGTGCTCATATTGACCCAGAGCTACACTGCTAGTTTAACATCAATGTTAACAGTTCAGCAGCTCCAACCAACTGTTAGTGATGTAAACTTTCTCCTGAAAAATGGAGACAATGTTGGTTATCAGGAAGGTTCTTTTGTTTACGGCATTTTGAGGCAACTCGGTTTTCGGGATGAGAAGCTTCAGACCTATAATTCCACAGAAGACTTGCATCGACTTTTTCAAATTGGGAGTACAAACGGTGGTATAAGTGCTGCTTTTGATGAAACCCCATACTTCAAGGTTTTTATTGCAAGTTATTGCTCGAAATACACAATGCTTGATCCAACATTTAAAGCCGATGGTTTCGCCTTTGTCTTCCCAAAAGATTCACCTCTGGCTCGCGATGTTTCGAGGGCAATCTTGAATGTGAATGAGGGAGGCCAGGCGAAAAAGATCGAAGACAGATGGTTCAATAGACACTCGAGTTGTCCAGACCCAAATAGCAAGGTCTCTTCCAACAGTCTTAGCCTTGAAAGCTTCTGGGGTCTCTTCCTCATTGCTGGAGTAGCTTCAGTACTAGCTCTACTCATATTTGGGGGCACATTCTTGTATGAACACAAGGACATGTTAATCTGCTCTGATTCAGAGGATTCATCGTGGAAAAAACTTTGTGACATATTAAAACAATACGACCTAAAAGACCAGAAGAGCCATACTTTTAGGCGTGAAGATCAGAGCCAAATTGGAGCAGAGAGTGTTTCTGTTGAGCAGAGTCCCCAGAGCACACCTCCTACTGATCATGGTCAGTCACCTAGAGAGACTGAACCTCAACAATTCGGAGAGATTGAACCGGCTATTGAGCTTGCTCAGGGACCAAGAGGAAATCAGTAG

Protein Analysis

923

Amino Acids

102.71

Weight (kDa)

5.63

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 25 - 376 1.7e-83 Receptor family ligand binding region
Peripla_BP_6 PF13458 49 - 313 2.3e-16 Periplasmic binding protein
Lig_chan-Glu_bd PF10613 449 - 546 5e-11 Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3 PF00497 499 - 785 1.5e-09 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 563 - 817 2e-39 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 567
AccI GTMKAC 1 cut(s) 438
AccII CGCG 1 cut(s) 2283
AciI CCGC 1 cut(s) 1547
AclWI GGATC 3 cut(s) 1243, 1701, 2216
AcsI RAATTY 5 cut(s) 630, 696, 824, 859, 1343
AcuI CTGAAG 2 cut(s) 2066, 2436
AfaI GTAC 5 cut(s) 434, 934, 1042, 2134, 2457
AfiI CCNNNNNNNGG 3 cut(s) 620, 1166, 1295
AflIII ACRYGT 4 cut(s) 280, 606, 705, 2505
AhdI GACNNNNNGTC 1 cut(s) 422
AhlI ACTAGT 1 cut(s) 1171
AjnI CCWGG 1 cut(s) 2322
AjuI GAANNNNNNNTTGG 2 cut(s) 1128, 1160
Alw21I GWGCWC 2 cut(s) 1908, 2666
Alw26I GTCTC 9 cut(s) 264, 375, 409, 1006, 1248, 2001, 2395, 2432, 2693
AlwI GGATC 3 cut(s) 1243, 1701, 2216
AlwNI CAGNNNCTG 2 cut(s) 179, 1616
Ama87I CYCGRG 1 cut(s) 2362
AoxI GGCC 5 cut(s) 84, 226, 246, 1247, 2320
ApeKI GCWGC 9 cut(s) 72, 176, 179, 182, 353, 893, 1544, 1960, 2153
ApoI RAATTY 5 cut(s) 630, 696, 824, 859, 1343
ArsI GACNNNNNNTTYG 8 cut(s) 35, 67, 267, 299, 431, 463, 1371, 1403
AseI ATTAAT 1 cut(s) 852
AspS9I GGNCC 7 cut(s) 85, 227, 1013, 1248, 1578, 1781, 2753
AsuC2I CCSGG 1 cut(s) 1251
AsuHPI GGTGA 6 cut(s) 388, 586, 937, 1496, 2262, 2682
AsuII TTCGAA 1 cut(s) 502
AvaI CYCGRG 1 cut(s) 2362
AvaII GGWCC 4 cut(s) 1013, 1578, 1781, 2753
BaeGI GKGCMC 1 cut(s) 2483
BanII GRGCYC 1 cut(s) 338
BarI GAAGNNNNNNTAC 2 cut(s) 1577, 1609
BauI CACGAG 1 cut(s) 1804
BbsI GAAGAC 5 cut(s) 586, 1650, 2109, 2248, 2346
Bbv12I GWGCWC 2 cut(s) 1908, 2666
BbvI GCAGC 9 cut(s) 59, 163, 166, 194, 340, 880, 1531, 1972, 2140
BccI CCATC 9 cut(s) 55, 227, 655, 807, 1102, 1325, 1475, 2234, 2340
BceAI ACGGC 1 cut(s) 2059
BciT130I CCWGG 1 cut(s) 2324
BciVI GTATCC 3 cut(s) 15, 1391, 1633
BclI TGATCA 2 cut(s) 258, 2677
BcnI CCSGG 1 cut(s) 1251
BcoDI GTCTC 9 cut(s) 264, 375, 409, 1006, 1248, 2001, 2395, 2432, 2693
BcuI ACTAGT 1 cut(s) 1171
BfmI CTRYAG 1 cut(s) 180
BfuI GTATCC 3 cut(s) 15, 1391, 1633
BglII AGATCT 1 cut(s) 1208
BisI GCNGC 9 cut(s) 73, 177, 180, 183, 354, 894, 1545, 1961, 2154
BlpI GCTNAGC 1 cut(s) 558
BlsI GCNGC 9 cut(s) 74, 178, 181, 184, 355, 895, 1546, 1962, 2155
BmcAI AGTACT 2 cut(s) 934, 2457
Bme1390I CCNGG 2 cut(s) 1251, 2324
Bme18I GGWCC 4 cut(s) 1013, 1578, 1781, 2753
BmeRI GACNNNNNGTC 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 2362
BmgT120I GGNCC 7 cut(s) 85, 227, 1013, 1248, 1578, 1781, 2753
BmiI GGNNCC 4 cut(s) 131, 335, 1680, 2754
BmrFI CCNGG 2 cut(s) 1251, 2324
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 4 cut(s) 84, 880, 1531, 2119
BmuI ACTGGG 1 cut(s) 57
BoxI GACNNNNGTC 1 cut(s) 1071
BpiI GAAGAC 5 cut(s) 586, 1650, 2109, 2248, 2346
BplI GAGNNNNNCTC 2 cut(s) 2653, 2685
BpmI CTGGAG 2 cut(s) 1152, 2463
Bpu10I CCTNAGC 1 cut(s) 2748
Bpu1102I GCTNAGC 1 cut(s) 558
Bpu14I TTCGAA 1 cut(s) 502
BpuEI CTTGAG 1 cut(s) 815
BpuMI CCSGG 1 cut(s) 1251
Bsa29I ATCGAT 1 cut(s) 1238
BsaI GGTCTC 2 cut(s) 2395, 2432
BsaJI CCNNGG 4 cut(s) 897, 1051, 1383, 1830
BsaWI WCCGGW 1 cut(s) 1758
BsaXI ACNNNNNCTCC 6 cut(s) 444, 474, 1125, 1155, 1998, 2028
Bsc4I CCNNNNNNNGG 3 cut(s) 620, 1166, 1295
Bse118I RCCGGY 2 cut(s) 1709, 2731
Bse1I ACTGG 3 cut(s) 52, 101, 1135
Bse3DI GCAATG 3 cut(s) 1433, 1598, 2436
BseBI CCWGG 1 cut(s) 2324
BseCI ATCGAT 1 cut(s) 1238
BseDI CCNNGG 4 cut(s) 897, 1051, 1383, 1830
BseGI GGATG 5 cut(s) 72, 109, 663, 871, 2077
BseLI CCNNNNNNNGG 3 cut(s) 620, 1166, 1295
BseMI GCAATG 3 cut(s) 1433, 1598, 2436
BseMII CTCAG 3 cut(s) 386, 549, 2762
BseNI ACTGG 3 cut(s) 52, 101, 1135
BseRI GAGGAG 1 cut(s) 1252
BseSI GKGCMC 1 cut(s) 2483
BseXI GCAGC 9 cut(s) 59, 163, 166, 194, 340, 880, 1531, 1972, 2140
BsgI GTGCAG 2 cut(s) 122, 339
Bsh1236I CGCG 1 cut(s) 2283
BshFI GGCC 5 cut(s) 86, 228, 248, 1249, 2322
BshVI ATCGAT 1 cut(s) 1238
BsiHKAI GWGCWC 2 cut(s) 1908, 2666
BsiHKCI CYCGRG 1 cut(s) 2362
BsiSI CCGG 4 cut(s) 1251, 1710, 1759, 2732
BslFI GGGAC 6 cut(s) 269, 410, 761, 1079, 2640, 2766
BslI CCNNNNNNNGG 3 cut(s) 620, 1166, 1295
BsmAI GTCTC 9 cut(s) 264, 375, 409, 1006, 1248, 2001, 2395, 2432, 2693
BsmBI CGTCTC 1 cut(s) 375
BsmFI GGGAC 6 cut(s) 269, 410, 761, 1079, 2640, 2766
BsmI GAATGC 1 cut(s) 1186
BsnI GGCC 5 cut(s) 86, 228, 248, 1249, 2322
Bso31I GGTCTC 2 cut(s) 2395, 2432
BsoBI CYCGRG 1 cut(s) 2362
Bsp119I TTCGAA 1 cut(s) 502
Bsp1286I GDGCHC 4 cut(s) 338, 1908, 2483, 2666
Bsp143I GATC 9 cut(s) 258, 1208, 1235, 1629, 1693, 2221, 2334, 2611, 2677
Bsp1720I GCTNAGC 1 cut(s) 558
Bsp19I CCATGG 1 cut(s) 1830
Bsp68I TCGCGA 1 cut(s) 2283
BspACI CCGC 1 cut(s) 1547
BspANI GGCC 5 cut(s) 86, 228, 248, 1249, 2322
BspCNI CTCAG 3 cut(s) 385, 550, 2761
BspDI ATCGAT 1 cut(s) 1238
BspFNI CGCG 1 cut(s) 2283
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 4 cut(s) 131, 335, 1680, 2754
BspMAI CTGCAG 1 cut(s) 184
BspPI GGATC 3 cut(s) 1243, 1701, 2216
BspQI GCTCTTC 1 cut(s) 2582
BspT104I TTCGAA 1 cut(s) 502
BspTNI GGTCTC 2 cut(s) 2395, 2432
BsrDI GCAATG 3 cut(s) 1433, 1598, 2436
BsrFI RCCGGY 2 cut(s) 1709, 2731
BsrI ACTGG 3 cut(s) 52, 101, 1135
BssAI RCCGGY 2 cut(s) 1709, 2731
BssECI CCNNGG 4 cut(s) 897, 1051, 1383, 1830
BssMI GATC 9 cut(s) 258, 1208, 1235, 1629, 1693, 2221, 2334, 2611, 2677
BssSI CACGAG 1 cut(s) 1804
BssT1I CCWWGG 3 cut(s) 897, 1383, 1830
Bst2BI CACGAG 1 cut(s) 1804
Bst2UI CCWGG 1 cut(s) 2324
Bst4CI ACNGT 4 cut(s) 1954, 1975, 2141, 2402
Bst6I CTCTTC 3 cut(s) 2398, 2435, 2582
BstBI TTCGAA 1 cut(s) 502
BstC8I GCNNGC 4 cut(s) 216, 246, 2281, 2745
BstDEI CTNAG 5 cut(s) 372, 558, 1405, 2405, 2748
BstDSI CCRYGG 1 cut(s) 1830
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 5 cut(s) 72, 109, 663, 871, 2077
BstFNI CGCG 1 cut(s) 2283
BstKTI GATC 9 cut(s) 261, 1211, 1238, 1632, 1696, 2224, 2337, 2614, 2680
BstMAI GTCTC 9 cut(s) 264, 375, 409, 1006, 1248, 2001, 2395, 2432, 2693
BstMBI GATC 9 cut(s) 258, 1208, 1235, 1629, 1693, 2221, 2334, 2611, 2677
BstMWI GCNNNNNNNGC 7 cut(s) 136, 182, 890, 899, 1223, 2415, 2447
BstNI CCWGG 1 cut(s) 2324
BstNSI RCATGY 4 cut(s) 284, 610, 748, 2509
BstPAI GACNNNNGTC 1 cut(s) 1071
BstSCI CCNGG 2 cut(s) 1249, 2322
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 2483
BstUI CGCG 1 cut(s) 2283
BstV1I GCAGC 9 cut(s) 59, 163, 166, 194, 340, 880, 1531, 1972, 2140
BstV2I GAAGAC 5 cut(s) 586, 1650, 2109, 2248, 2346
BstX2I RGATCY 2 cut(s) 1208, 1693
BstXI CCANNNNNNTGG 2 cut(s) 916, 1278
BstYI RGATCY 2 cut(s) 1208, 1693
Bsu15I ATCGAT 1 cut(s) 1238
BsuI GTATCC 3 cut(s) 15, 1391, 1633
BsuRI GGCC 5 cut(s) 86, 228, 248, 1249, 2322
BsuTUI ATCGAT 1 cut(s) 1238
BtgI CCRYGG 1 cut(s) 1830
BtgZI GCGATG 1 cut(s) 2298
BtsCI GGATG 5 cut(s) 72, 109, 663, 871, 2077
BtsI GCAGTG 2 cut(s) 921, 1926
BtsIMutI CAGTG 3 cut(s) 45, 921, 1926
BtuMI TCGCGA 1 cut(s) 2283
Cac8I GCNNGC 4 cut(s) 216, 246, 2281, 2745
CaiI CAGNNNCTG 2 cut(s) 179, 1616
CciI TCATGA 1 cut(s) 255
Cfr10I RCCGGY 2 cut(s) 1709, 2731
Cfr13I GGNCC 7 cut(s) 85, 227, 1013, 1248, 1578, 1781, 2753
ClaI ATCGAT 1 cut(s) 1238
CseI GACGC 2 cut(s) 222, 488
Csp6I GTAC 5 cut(s) 433, 933, 1041, 2133, 2456
CviQI GTAC 5 cut(s) 433, 933, 1041, 2133, 2456
DdeI CTNAG 5 cut(s) 372, 558, 1405, 2405, 2748
DpnI GATC 9 cut(s) 260, 1210, 1237, 1631, 1695, 2223, 2336, 2613, 2679
DpnII GATC 9 cut(s) 258, 1208, 1235, 1629, 1693, 2221, 2334, 2611, 2677
DraI TTTAAA 2 cut(s) 765, 2233
DriI GACNNNNNGTC 1 cut(s) 422
Eam1104I CTCTTC 3 cut(s) 2398, 2435, 2582
Eam1105I GACNNNNNGTC 1 cut(s) 422
EarI CTCTTC 3 cut(s) 2398, 2435, 2582
Eco130I CCWWGG 3 cut(s) 897, 1383, 1830
Eco24I GRGCYC 1 cut(s) 338
Eco31I GGTCTC 2 cut(s) 2395, 2432
Eco32I GATATC 2 cut(s) 394, 1447
Eco47I GGWCC 4 cut(s) 1013, 1578, 1781, 2753
Eco57I CTGAAG 2 cut(s) 2066, 2436
Eco88I CYCGRG 1 cut(s) 2362
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoO109I RGGNCCY 3 cut(s) 227, 1578, 1781
EcoRII CCWGG 1 cut(s) 2322
EcoRV GATATC 2 cut(s) 394, 1447
EcoT14I CCWWGG 3 cut(s) 897, 1383, 1830
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 3 cut(s) 897, 1383, 1830
Esp3I CGTCTC 1 cut(s) 375
FalI AAGNNNNNCTT 6 cut(s) 546, 578, 1195, 1227, 2140, 2172
FaqI GGGAC 6 cut(s) 269, 410, 761, 1079, 2640, 2766
FauNDI CATATG 2 cut(s) 1360, 1889
FbaI TGATCA 2 cut(s) 258, 2677
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 9 cut(s) 73, 177, 180, 183, 354, 894, 1545, 1961, 2154
FokI GGATG 5 cut(s) 79, 96, 670, 878, 2084
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 9 cut(s) 73, 177, 180, 183, 354, 894, 1545, 1961, 2154
GluI GCNGC 9 cut(s) 73, 177, 180, 183, 354, 894, 1545, 1961, 2154
GsuI CTGGAG 2 cut(s) 1152, 2463
HaeIII GGCC 5 cut(s) 86, 228, 248, 1249, 2322
HapII CCGG 4 cut(s) 1251, 1710, 1759, 2732
HgaI GACGC 2 cut(s) 222, 488
HincII GTYRAC 4 cut(s) 439, 1516, 1704, 1950
HindII GTYRAC 4 cut(s) 439, 1516, 1704, 1950
HindIII AAGCTT 3 cut(s) 791, 2078, 2416
HpaI GTTAAC 2 cut(s) 1704, 1950
HpaII CCGG 4 cut(s) 1251, 1710, 1759, 2732
HphI GGTGA 6 cut(s) 388, 586, 937, 1496, 2262, 2682
Hpy166II GTNNAC 8 cut(s) 439, 604, 1516, 1591, 1704, 1950, 1987, 2041
Hpy8I GTNNAC 8 cut(s) 439, 604, 1516, 1591, 1704, 1950, 1987, 2041
Hpy99I CGWCG 2 cut(s) 440, 482
HpyAV CCTTC 7 cut(s) 143, 324, 449, 624, 916, 952, 2021
HpyCH4III ACNGT 4 cut(s) 1954, 1975, 2141, 2402
HpyCH4IV ACGT 2 cut(s) 435, 705
HpyF10VI GCNNNNNNNGC 7 cut(s) 136, 182, 890, 899, 1223, 2415, 2447
HpyF3I CTNAG 5 cut(s) 372, 558, 1405, 2405, 2748
HpySE526I ACGT 2 cut(s) 435, 705
Ksp22I TGATCA 2 cut(s) 258, 2677
KspAI GTTAAC 2 cut(s) 1704, 1950
Kzo9I GATC 9 cut(s) 258, 1208, 1235, 1629, 1693, 2221, 2334, 2611, 2677
LguI GCTCTTC 1 cut(s) 2582
LmnI GCTCC 8 cut(s) 135, 333, 980, 1273, 1678, 1849, 1968, 2627
Lsp1109I GCAGC 9 cut(s) 59, 163, 166, 194, 340, 880, 1531, 1972, 2140
LweI GCATC 4 cut(s) 84, 880, 1531, 2119
MaeII ACGT 2 cut(s) 435, 705
MaeIII GTNAC 8 cut(s) 574, 609, 685, 733, 1354, 1499, 2552, 2688
MalI GATC 9 cut(s) 260, 1210, 1237, 1631, 1695, 2223, 2336, 2613, 2679
MboI GATC 9 cut(s) 258, 1208, 1235, 1629, 1693, 2221, 2334, 2611, 2677
MflI RGATCY 2 cut(s) 1208, 1693
MhlI GDGCHC 4 cut(s) 338, 1908, 2483, 2666
MlyI GAGTC 2 cut(s) 359, 2662
MmeI TCCRAC 7 cut(s) 392, 501, 866, 1126, 1990, 2249, 2421
MslI CAYNNNNRTG 4 cut(s) 80, 854, 914, 1631
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 4 cut(s) 1251, 1710, 1759, 2732
MspR9I CCNGG 2 cut(s) 1251, 2324
Mva1269I GAATGC 1 cut(s) 1186
MvaI CCWGG 1 cut(s) 2324
MvnI CGCG 1 cut(s) 2283
MwoI GCNNNNNNNGC 7 cut(s) 136, 182, 890, 899, 1223, 2415, 2447
NciI CCSGG 1 cut(s) 1251
NcoI CCATGG 1 cut(s) 1830
NdeI CATATG 2 cut(s) 1360, 1889
NdeII GATC 9 cut(s) 258, 1208, 1235, 1629, 1693, 2221, 2334, 2611, 2677
NlaIV GGNNCC 4 cut(s) 131, 335, 1680, 2754
NmuCI GTSAC 6 cut(s) 574, 685, 733, 1354, 2552, 2688
NruI TCGCGA 1 cut(s) 2283
NspI RCATGY 4 cut(s) 284, 610, 748, 2509
NspV TTCGAA 1 cut(s) 502
PaeR7I CTCGAG 1 cut(s) 2362
PagI TCATGA 1 cut(s) 255
PciI ACATGT 3 cut(s) 280, 606, 2505
PciSI GCTCTTC 1 cut(s) 2582
PctI GAATGC 1 cut(s) 1186
PfeI GAWTC 8 cut(s) 504, 993, 1285, 1312, 1613, 2267, 2522, 2531
PkrI GCNGC 9 cut(s) 74, 178, 181, 184, 355, 895, 1546, 1962, 2155
PleI GAGTC 2 cut(s) 359, 2661
PpsI GAGTC 2 cut(s) 359, 2661
PpuMI RGGWCCY 2 cut(s) 1578, 1781
PscI ACATGT 3 cut(s) 280, 606, 2505
PshAI GACNNNNGTC 1 cut(s) 1071
PshBI ATTAAT 1 cut(s) 852
PsiI TTATAA 1 cut(s) 567
Psp5II RGGWCCY 2 cut(s) 1578, 1781
Psp6I CCWGG 1 cut(s) 2322
PspGI CCWGG 1 cut(s) 2322
PspN4I GGNNCC 4 cut(s) 131, 335, 1680, 2754
PspPI GGNCC 7 cut(s) 85, 227, 1013, 1248, 1578, 1781, 2753
PspPPI RGGWCCY 2 cut(s) 1578, 1781
PspXI VCTCGAGB 1 cut(s) 2362
PstI CTGCAG 1 cut(s) 184
PstNI CAGNNNCTG 2 cut(s) 179, 1616
PsuI RGATCY 2 cut(s) 1208, 1693
PvuII CAGCTG 1 cut(s) 176
RruI TCGCGA 1 cut(s) 2283
RsaI GTAC 5 cut(s) 434, 934, 1042, 2134, 2457
RsaNI GTAC 5 cut(s) 433, 933, 1041, 2133, 2456
RseI CAYNNNNRTG 4 cut(s) 80, 854, 914, 1631
SalI GTCGAC 1 cut(s) 437
SapI GCTCTTC 1 cut(s) 2582
SatI GCNGC 9 cut(s) 73, 177, 180, 183, 354, 894, 1545, 1961, 2154
Sau3AI GATC 9 cut(s) 258, 1208, 1235, 1629, 1693, 2221, 2334, 2611, 2677
Sau96I GGNCC 7 cut(s) 85, 227, 1013, 1248, 1578, 1781, 2753
ScaI AGTACT 2 cut(s) 934, 2457
SchI GAGTC 2 cut(s) 359, 2662
ScrFI CCNGG 2 cut(s) 1251, 2324
SduI GDGCHC 4 cut(s) 338, 1908, 2483, 2666
SfaNI GCATC 4 cut(s) 84, 880, 1531, 2119
SfcI CTRYAG 1 cut(s) 180
Sfr274I CTCGAG 1 cut(s) 2362
SfuI TTCGAA 1 cut(s) 502
SinI GGWCC 4 cut(s) 1013, 1578, 1781, 2753
SlaI CTCGAG 1 cut(s) 2362
SmiMI CAYNNNNRTG 4 cut(s) 80, 854, 914, 1631
SmlI CTYRAG 2 cut(s) 794, 2362
SmoI CTYRAG 2 cut(s) 794, 2362
SpeI ACTAGT 1 cut(s) 1171
SsiI CCGC 1 cut(s) 1547
StyD4I CCNGG 2 cut(s) 1249, 2322
StyI CCWWGG 3 cut(s) 897, 1383, 1830
TaaI ACNGT 4 cut(s) 1954, 1975, 2141, 2402
TaiI ACGT 2 cut(s) 438, 708
TatI WGTACW 3 cut(s) 932, 2132, 2455
TfiI GAWTC 8 cut(s) 504, 993, 1285, 1312, 1613, 2267, 2522, 2531
TscAI CASTG 3 cut(s) 52, 921, 1933
TseFI GTSAC 6 cut(s) 574, 685, 733, 1354, 2552, 2688
TseI GCWGC 9 cut(s) 72, 176, 179, 182, 353, 893, 1544, 1960, 2153
Tsp45I GTSAC 6 cut(s) 574, 685, 733, 1354, 2552, 2688
TspGWI ACGGA 2 cut(s) 752, 1182
TspRI CASTG 3 cut(s) 52, 921, 1933
VpaK11BI GGWCC 4 cut(s) 1013, 1578, 1781, 2753
VspI ATTAAT 1 cut(s) 852
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 5 cut(s) 630, 696, 824, 859, 1343
XceI RCATGY 4 cut(s) 284, 610, 748, 2509
XhoI CTCGAG 1 cut(s) 2362
XmiI GTMKAC 1 cut(s) 438
ZrmI AGTACT 2 cut(s) 934, 2457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.