Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005137

Physical Location & Seq

Genomic Coordinates Forward (+)

31416729 .. 31418199

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0220000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAGGCAGTTGTAAAATCATGGCACGAAACTTCAAAAGTGGAGGCTAGAGTTTACTTTCTCCTTGATAACGAAAAAACAGATACTGAAAAATATGCTCCAGTTGTGAATATTGATAAGGCCTTTGAATCACCCGATACACACAGAAATTGTTTTCCTTTTCTTAGGCAGTATGCTGAGGATTCTTTCTCCAGAGCATCTTGCTTGGTGACCCCCAAGAGTATCATGTCTTACCCACAGGTTTGGAAAGGTCAAGGATCAAGGAAATGGAAACATGGGCAACAGGATGGTTTCTTTGTTCAGTTTGAGACACCTTTCTTGCGAAAGTTGTGGTTTATTCCTAGTTCCAATGAATTTGACTCCATTTTCAGAGCTTTTAGGACACAGTTTGTGTGTCCTGCTATAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000228 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0000785 GO:0000790 GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0003824 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006464 GO:0006476 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016569 GO:0016570 GO:0016575 GO:0016580 GO:0016604 GO:0016607 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033119 GO:0033558 GO:0033993 GO:0034641 GO:0035601 GO:0036211 GO:0040029 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043484 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045292 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061574 GO:0065007 GO:0070013 GO:0070822 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0098732 GO:0140096 GO:0140110 GO:1901360 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

SAP18

Protein Analysis

136

Amino Acids

16.0

Weight (kDa)

7.72

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45640 AT2G45640
fragaria_vesca	FvH4_5g01190 FvH4_7g12660
malus_domestica	MD02G1197700.v1.1 MD04G1070900.v1.1
prunus_persica	Prupe.2G150900_v2.0.a1 Prupe.5G087000_v2.0.a1
pyrus_communis	pycom02g16140 pycom04g06410
rosa_chinensis	RchiOBHm_Chr1g0351651 RchiOBHm_Chr7g0199901
rosa_laevigata	RLG00000003761 RLG00000028392
rosa_multiflora	Rmu_co8389151.1_g000001 Rmu_sc0001144.1_g000006 Rmu_sc0002748.1_g000010
rosa_roxburghii	Rroxscaffold_3G00256390
rosa_rugosa	Rorug01G0219900 Rorug01G0220000 Rorug07G0057000
rosa_samantha	Rh1AG234400 Rh1BG205000 Rh1CG219100 Rh1DG232000 Rh7AG182300 Rh7CG191800 Rh7DG185100
rosa_wichuraiana	Rw1G020410 Rw7G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	36, 128
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	123, 220
BbvCI	CCTCAGC	1 cut(s)	177
BccI	CCATC	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	48, 342
BfmI	CTRYAG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	206
BpmI	CTGGAG	2 cut(s)	84, 175
Bpu10I	CCTNAGC	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	101
BseGI	GGATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	101
BssMI	GATC	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	387
BstDEI	CTNAG	2 cut(s)	164, 177
BstEII	GGTNACC	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	260
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	257
BstPI	GGTNACC	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	402
BstXI	CCANNNNNNTGG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	292
CaiI	CAGNNNCTG	1 cut(s)	86
CviAII	CATG	3 cut(s)	21, 226, 275
CviJI	RGCY	3 cut(s)	47, 122, 374
CviKI_1	RGCY	3 cut(s)	47, 122, 374
DdeI	CTNAG	2 cut(s)	164, 177
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
Eco147I	AGGCCT	1 cut(s)	122
Eco91I	GGTNACC	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	208
FaeI	CATG	3 cut(s)	24, 229, 278
FaiI	YATR	6 cut(s)	22, 96, 174, 227, 276, 404
FatI	CATG	3 cut(s)	20, 225, 274
FokI	GGATG	1 cut(s)	299
FspBI	CTAG	2 cut(s)	48, 342
GsuI	CTGGAG	2 cut(s)	84, 175
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	24, 229, 278
HinfI	GANTC	3 cut(s)	128, 182, 359
HphI	GGTGA	2 cut(s)	123, 220
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	371
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	387
HpyF3I	CTNAG	2 cut(s)	164, 177
Hsp92II	CATG	3 cut(s)	24, 229, 278
Kzo9I	GATC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	4 cut(s)	114, 205, 224, 269
LweI	GCATC	1 cut(s)	206
MaeI	CTAG	2 cut(s)	48, 342
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MluCI	AATT	2 cut(s)	148, 353
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	2 cut(s)	37, 172
NdeII	GATC	1 cut(s)	257
NlaIII	CATG	3 cut(s)	24, 229, 278
NmuCI	GTSAC	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	128, 182
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PspEI	GGTNACC	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	86
Sau3AI	GATC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	353
SetI	ASST	4 cut(s)	243, 253, 316, 376
SfaNI	GCATC	1 cut(s)	206
SfcI	CTRYAG	1 cut(s)	402
Sse9I	AATT	2 cut(s)	148, 353
SseBI	AGGCCT	1 cut(s)	122
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	48, 342
StuI	AGGCCT	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	387
TasI	AATT	2 cut(s)	148, 353
TfiI	GAWTC	2 cut(s)	128, 182
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	366
XapI	RAATTY	1 cut(s)	353
XspI	CTAG	2 cut(s)	48, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.