Rw7G015990

Histone deacetylase complex subunit SAP18-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005137
Physical Location & Seq
Forward (+)
16333409 .. 16335975
2567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G015990.1

Sequence Viewer

Length: 519 bp
ATGGAGAGGAGAAGCAGAGACGAAAAGATGGGCGGAGGAGGAGGAGGAGGACCTGGTCCCCGAGGTGGCCTACCCGGTCGACCTCTCCCTCCCCCACCTCCTCTTCCTCAGTCCCGCGGCCCACCTCCCCCTCCGCCCCGCCGCTTCGAACCCGTCGACCGTGAAAAGACTTGCCCTCTGTTGCTTCGGGTCTTCACTAAGATTGGAGGTCATCACAATCAGGAGGACTTTGCAGTGAGAGGCAAAGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCCACACTTCGCGAACTAACTGATCTTGTCAAGGAGATTGCCCCAGCGGCTAGGAGAAGAAATGCAAAACTGTCATTTGCTTTTGTATACCCTGACAAGGGTGGTCGTTTTGTCTTGAAACAGGCGGGGATAACACATGCTTATGGAAACATGGGGAGACGTCTAGATGACAGCAAGTCCTTGAATGAGCTCAAGTTCCAGATTGGAGATTATTTGGATGTGGCAGTCCTATAG

Protein Analysis

172

Amino Acids

19.06

Weight (kDa)

9.89

Isoelectric Point (pI)

63.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP18 PF06487 52 - 171 1.4e-40 Sin3 associated polypeptide p18 (SAP18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 448
AccI GTMKAC 3 cut(s) 79, 156, 372
AccII CGCG 2 cut(s) 117, 297
AciI CCGC 8 cut(s) 33, 115, 117, 134, 139, 142, 332, 410
AcyI GRCGYC 1 cut(s) 445
AfiI CCNNNNNNNGG 3 cut(s) 65, 382, 383
AgsI TTSAA 2 cut(s) 403, 469
AhdI GACNNNNNGTC 1 cut(s) 460
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 1 cut(s) 475
AluI AGCT 1 cut(s) 475
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 2 cut(s) 12, 436
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 67, 118
AspS9I GGNCC 3 cut(s) 50, 56, 119
AsuC2I CCSGG 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 147
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 2 cut(s) 50, 56
BanII GRGCYC 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 477
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 54
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 2 cut(s) 12, 436
BfaI CTAG 2 cut(s) 336, 449
BfmI CTRYAG 1 cut(s) 515
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 3 cut(s) 118, 142, 333
BlsI GCNGC 3 cut(s) 119, 143, 334
Bme1390I CCNGG 2 cut(s) 54, 75
Bme18I GGWCC 2 cut(s) 50, 56
BmeRI GACNNNNNGTC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 3 cut(s) 50, 56, 119
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 54, 75
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 184
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 445
BsaJI CCNNGG 2 cut(s) 61, 115
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 382, 383
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 61, 115
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 3 cut(s) 65, 382, 383
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 6 cut(s) 22, 51, 54, 57, 60, 90
BseYI CCCAGC 1 cut(s) 328
Bsh1236I CGCG 2 cut(s) 117, 297
Bsh1285I CGRYCG 2 cut(s) 79, 160
BshFI GGCC 2 cut(s) 69, 120
BsiEI CGRYCG 2 cut(s) 79, 160
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 2 cut(s) 42, 97
BslI CCNNNNNNNGG 3 cut(s) 65, 382, 383
BsmAI GTCTC 2 cut(s) 12, 436
BsmBI CGTCTC 2 cut(s) 12, 436
BsmFI GGGAC 2 cut(s) 42, 97
BsnI GGCC 2 cut(s) 69, 120
BsoBI CYCGRG 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 1 cut(s) 307
Bsp68I TCGCGA 1 cut(s) 297
BspACI CCGC 8 cut(s) 33, 115, 117, 134, 139, 142, 332, 410
BspANI GGCC 2 cut(s) 69, 120
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 2 cut(s) 117, 297
BspLI GGNNCC 1 cut(s) 58
BspT104I TTCGAA 1 cut(s) 147
BssECI CCNNGG 2 cut(s) 61, 115
BssMI GATC 1 cut(s) 307
BssNAI GTATAC 1 cut(s) 373
BssNI GRCGYC 1 cut(s) 445
Bst1107I GTATAC 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 161, 357
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 445
BstBI TTCGAA 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 108, 198
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 508
BstFNI CGCG 2 cut(s) 117, 297
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 2 cut(s) 12, 436
BstMBI GATC 1 cut(s) 307
BstMCI CGRYCG 2 cut(s) 79, 160
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 425
BstSCI CCNGG 2 cut(s) 52, 73
BstSFI CTRYAG 1 cut(s) 515
BstUI CGCG 2 cut(s) 117, 297
BstV2I GAAGAC 1 cut(s) 184
BstZ17I GTATAC 1 cut(s) 373
BsuRI GGCC 2 cut(s) 69, 120
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 508
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
BtuMI TCGCGA 1 cut(s) 297
Cfr13I GGNCC 3 cut(s) 50, 56, 119
Cfr42I CCGCGG 1 cut(s) 118
CsiI ACCWGGT 1 cut(s) 52
CviAII CATG 3 cut(s) 276, 422, 436
CviJI RGCY 4 cut(s) 69, 120, 335, 475
CviKI_1 RGCY 4 cut(s) 69, 120, 335, 475
DdeI CTNAG 2 cut(s) 108, 198
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DriI GACNNNNNGTC 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 108
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 2 cut(s) 48, 123
Ecl136II GAGCTC 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 477
Eco47I GGWCC 2 cut(s) 50, 56
Eco53kI GAGCTC 1 cut(s) 475
Eco88I CYCGRG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 477
Esp3I CGTCTC 2 cut(s) 12, 436
FaeI CATG 3 cut(s) 279, 425, 439
FaiI YATR 7 cut(s) 273, 277, 373, 423, 429, 437, 517
FaqI GGGAC 2 cut(s) 42, 97
FatI CATG 3 cut(s) 275, 421, 435
FauI CCCGC 3 cut(s) 122, 146, 403
FblI GTMKAC 3 cut(s) 79, 156, 372
Fnu4HI GCNGC 3 cut(s) 118, 142, 333
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 3 cut(s) 118, 142, 333
FspBI CTAG 2 cut(s) 336, 449
GluI GCNGC 3 cut(s) 118, 142, 333
GsaI CCCAGC 1 cut(s) 332
HaeIII GGCC 2 cut(s) 69, 120
HapII CCGG 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 445
Hin1II CATG 3 cut(s) 279, 425, 439
HincII GTYRAC 2 cut(s) 80, 157
HindII GTYRAC 2 cut(s) 80, 157
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 3 cut(s) 80, 157, 373
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 5 cut(s) 221, 296, 400, 449, 484
Hpy8I GTNNAC 3 cut(s) 80, 157, 373
Hpy99I CGWCG 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 161, 357
HpyCH4IV ACGT 1 cut(s) 445
HpyCH4V TGCA 2 cut(s) 233, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 2 cut(s) 108, 198
HpySE526I ACGT 1 cut(s) 445
Hsp92I GRCGYC 1 cut(s) 445
Hsp92II CATG 3 cut(s) 279, 425, 439
KspI CCGCGG 1 cut(s) 118
Kzo9I GATC 1 cut(s) 307
LpnPI CCDG 8 cut(s) 39, 66, 88, 206, 342, 390, 392, 497
LweI GCATC 1 cut(s) 274
MabI ACCWGGT 1 cut(s) 52
MaeI CTAG 2 cut(s) 336, 449
MaeII ACGT 1 cut(s) 445
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 95, 184, 354
MhlI GDGCHC 1 cut(s) 477
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 2 cut(s) 117, 332
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 54, 75
MvaI CCWGG 1 cut(s) 54
MvnI CGCG 2 cut(s) 117, 297
MwoI GCNNNNNNNGC 1 cut(s) 332
NciI CCSGG 1 cut(s) 75
NdeII GATC 1 cut(s) 307
NlaIII CATG 3 cut(s) 279, 425, 439
NlaIV GGNNCC 1 cut(s) 58
NruI TCGCGA 1 cut(s) 297
NspI RCATGY 1 cut(s) 425
NspV TTCGAA 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 54
PkrI GCNGC 3 cut(s) 119, 143, 334
PpuMI RGGWCCY 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 52
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 3 cut(s) 50, 56, 119
PspPPI RGGWCCY 1 cut(s) 50
PsyI GACNNNGTC 1 cut(s) 54
RruI TCGCGA 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 477
SacII CCGCGG 1 cut(s) 118
SalI GTCGAC 2 cut(s) 78, 155
SatI GCNGC 3 cut(s) 118, 142, 333
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 3 cut(s) 50, 56, 119
ScrFI CCNGG 2 cut(s) 54, 75
SduI GDGCHC 1 cut(s) 477
SetI ASST 9 cut(s) 55, 67, 85, 100, 127, 211, 264, 448, 477
SexAI ACCWGGT 1 cut(s) 52
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 515
Sfr303I CCGCGG 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 147
SgrBI CCGCGG 1 cut(s) 118
SinI GGWCC 2 cut(s) 50, 56
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SsiI CCGC 8 cut(s) 33, 115, 117, 134, 139, 142, 332, 410
SspMI CTAG 2 cut(s) 336, 449
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 52, 73
TaaI ACNGT 2 cut(s) 161, 357
TaiI ACGT 1 cut(s) 448
TaqI TCGA 3 cut(s) 79, 147, 156
TauI GCSGC 3 cut(s) 120, 144, 335
TscAI CASTG 1 cut(s) 240
TspRI CASTG 1 cut(s) 240
Tth111I GACNNNGTC 1 cut(s) 54
VpaK11BI GGWCC 2 cut(s) 50, 56
XbaI TCTAGA 1 cut(s) 448
XceI RCATGY 1 cut(s) 425
XmiI GTMKAC 3 cut(s) 79, 156, 372
XspI CTAG 2 cut(s) 336, 449
ZraI GACGTC 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.