Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005137

Physical Location & Seq

Genomic Coordinates Reverse (-)

724118 .. 725915

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGAGAAGAAGCAGAGACGAAAGAATGGCCGGAGGAGCCGGAGCAGGTCCCCGGGGCCCACCAGGCAGACCTCTCCCTCCGCCTCCTTCATTCCCTCAGTCCCGGGGCCCACCACCCCCTCCTCCCCGCCGCTTCGAACCCGTCGACCGTGAAAAGACCTGCCCTCTGTTGCTTCGGGTCTTCACCAAGAATGGAGGTCATCACACTCAGGAGGACTTTGCAGTGAGAGGCAAAGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCCACACTTCGTGAACTAACTGATCTTGTCAAGGAGATTGCCCCAGCGGCTAGGAGAAGAAATGCAAAACTGTCGTTTGCTTTTGTATACCCTGACAAGAGGGGTTGTTATGTCTTCAAACAGGCAGGGATGACACATGCTCATGGAAACATAGGGAGACGTCTAGATGACAGCAAGTCCTTGAATGAGCTCAAGTTCCAGATTGGAGATTATTTGGATGTGGCAGTCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0031974 GO:0031981 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

SAP18

Protein Analysis

170

Amino Acids

18.98

Weight (kDa)

9.84

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP18	PF06487	49 - 168	2e-41	Sin3 associated polypeptide p18 (SAP18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45640 AT2G45640
fragaria_vesca	FvH4_5g01190 FvH4_7g12660
malus_domestica	MD02G1197700.v1.1 MD04G1070900.v1.1
prunus_persica	Prupe.2G150900_v2.0.a1 Prupe.5G087000_v2.0.a1
pyrus_communis	pycom02g16140 pycom04g06410
rosa_chinensis	RchiOBHm_Chr1g0351651 RchiOBHm_Chr7g0199901
rosa_laevigata	RLG00000003761 RLG00000028392
rosa_multiflora	Rmu_co8389151.1_g000001 Rmu_sc0001144.1_g000006 Rmu_sc0002748.1_g000010
rosa_roxburghii	Rroxscaffold_3G00256390
rosa_rugosa	Rorug01G0219900 Rorug01G0220000 Rorug07G0057000
rosa_samantha	Rh1AG234400 Rh1BG205000 Rh1CG219100 Rh1DG232000 Rh7AG182300 Rh7CG191800 Rh7DG185100
rosa_wichuraiana	Rw1G020410 Rw7G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	439
Acc36I	ACCTGC	2 cut(s)	38, 170
AccI	GTMKAC	2 cut(s)	147, 363
AciI	CCGC	4 cut(s)	83, 130, 133, 323
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	436
AdeI	CACNNNGTG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	394, 460
AhdI	GACNNNNNGTC	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	1 cut(s)	466
AluI	AGCT	1 cut(s)	466
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	2 cut(s)	12, 427
Ama87I	CYCGRG	2 cut(s)	54, 105
AoxI	GGCC	3 cut(s)	30, 58, 109
ApaI	GGGCCC	2 cut(s)	62, 113
AspS9I	GGNCC	5 cut(s)	50, 58, 59, 109, 110
AsuC2I	CCSGG	4 cut(s)	55, 56, 106, 107
AsuHPI	GGTGA	1 cut(s)	178
AsuII	TTCGAA	1 cut(s)	138
AvaI	CYCGRG	2 cut(s)	54, 105
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	2 cut(s)	62, 113
BanII	GRGCYC	3 cut(s)	62, 113, 468
BbsI	GAAGAC	2 cut(s)	175, 382
Bbv12I	GWGCWC	1 cut(s)	468
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BciT130I	CCWGG	1 cut(s)	66
BcnI	CCSGG	4 cut(s)	55, 56, 106, 107
BcoDI	GTCTC	2 cut(s)	12, 427
BfaI	CTAG	2 cut(s)	327, 440
BfmI	CTRYAG	1 cut(s)	506
BfuAI	ACCTGC	2 cut(s)	38, 170
BglI	GCCNNNNNGGC	2 cut(s)	66, 323
BisI	GCNGC	2 cut(s)	133, 324
BlsI	GCNGC	2 cut(s)	134, 325
Bme1390I	CCNGG	5 cut(s)	55, 56, 66, 106, 107
Bme18I	GGWCC	1 cut(s)	50
BmeRI	GACNNNNNGTC	1 cut(s)	451
BmeT110I	CYCGRG	2 cut(s)	54, 105
BmgT120I	GGNCC	5 cut(s)	50, 58, 59, 109, 110
BmiI	GGNNCC	6 cut(s)	40, 52, 59, 60, 110, 111
BmrFI	CCNGG	5 cut(s)	55, 56, 66, 106, 107
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	2 cut(s)	175, 382
Bpu14I	TTCGAA	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	4 cut(s)	55, 56, 106, 107
BsaHI	GRCGYC	1 cut(s)	436
BsaJI	CCNNGG	5 cut(s)	53, 54, 55, 105, 106
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	5 cut(s)	53, 54, 55, 105, 106
BseGI	GGATG	2 cut(s)	411, 499
BseMII	CTCAG	2 cut(s)	113, 224
BseRI	GAGGAG	2 cut(s)	51, 114
BseSI	GKGCMC	2 cut(s)	62, 113
BseYI	CCCAGC	1 cut(s)	319
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	3 cut(s)	32, 60, 111
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	468
BsiHKCI	CYCGRG	2 cut(s)	54, 105
BsiSI	CCGG	4 cut(s)	33, 42, 55, 106
BslFI	GGGAC	2 cut(s)	36, 88
BsmAI	GTCTC	2 cut(s)	12, 427
BsmBI	CGTCTC	2 cut(s)	12, 427
BsmFI	GGGAC	2 cut(s)	36, 88
BsnI	GGCC	3 cut(s)	32, 60, 111
BsoBI	CYCGRG	2 cut(s)	54, 105
Bsp119I	TTCGAA	1 cut(s)	138
Bsp120I	GGGCCC	2 cut(s)	58, 109
Bsp1286I	GDGCHC	3 cut(s)	62, 113, 468
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	4 cut(s)	83, 130, 133, 323
BspANI	GGCC	3 cut(s)	32, 60, 111
BspCNI	CTCAG	2 cut(s)	112, 223
BspLI	GGNNCC	6 cut(s)	40, 52, 59, 60, 110, 111
BspMI	ACCTGC	2 cut(s)	38, 170
BspT104I	TTCGAA	1 cut(s)	138
BssECI	CCNNGG	5 cut(s)	53, 54, 55, 105, 106
BssMI	GATC	1 cut(s)	298
BssNAI	GTATAC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	436
Bst1107I	GTATAC	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	152, 348
BstACI	GRCGYC	1 cut(s)	436
BstBI	TTCGAA	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	99, 210
BstF5I	GGATG	2 cut(s)	411, 499
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	2 cut(s)	12, 427
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 66, 323
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	5 cut(s)	53, 54, 64, 104, 105
BstSFI	CTRYAG	1 cut(s)	506
BstSLI	GKGCMC	2 cut(s)	62, 113
BstV2I	GAAGAC	2 cut(s)	175, 382
BstZ17I	GTATAC	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	32, 60, 111
BtsCI	GGATG	2 cut(s)	411, 499
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	2 cut(s)	38, 170
Cfr13I	GGNCC	5 cut(s)	50, 58, 59, 109, 110
Cfr9I	CCCGGG	2 cut(s)	54, 105
CviAII	CATG	3 cut(s)	267, 413, 419
CviJI	RGCY	6 cut(s)	32, 41, 60, 111, 326, 466
CviKI_1	RGCY	6 cut(s)	32, 41, 60, 111, 326, 466
DdeI	CTNAG	2 cut(s)	99, 210
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DraIII	CACNNNGTG	1 cut(s)	287
DriI	GACNNNNNGTC	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	30
Eam1105I	GACNNNNNGTC	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	466
Eco24I	GRGCYC	3 cut(s)	62, 113, 468
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	466
Eco88I	CYCGRG	2 cut(s)	54, 105
EcoICRI	GAGCTC	1 cut(s)	466
EcoO109I	RGGNCCY	3 cut(s)	50, 58, 109
EcoRII	CCWGG	1 cut(s)	64
EcoT38I	GRGCYC	3 cut(s)	62, 113, 468
Esp3I	CGTCTC	2 cut(s)	12, 427
FaeI	CATG	3 cut(s)	270, 416, 422
FaiI	YATR	8 cut(s)	264, 268, 364, 387, 414, 420, 428, 508
FaqI	GGGAC	2 cut(s)	36, 88
FatI	CATG	3 cut(s)	266, 412, 418
FauI	CCCGC	1 cut(s)	137
FblI	GTMKAC	2 cut(s)	147, 363
Fnu4HI	GCNGC	2 cut(s)	133, 324
FokI	GGATG	2 cut(s)	418, 506
FriOI	GRGCYC	3 cut(s)	62, 113, 468
Fsp4HI	GCNGC	2 cut(s)	133, 324
FspBI	CTAG	2 cut(s)	327, 440
GluI	GCNGC	2 cut(s)	133, 324
GsaI	CCCAGC	1 cut(s)	323
HaeIII	GGCC	3 cut(s)	32, 60, 111
HapII	CCGG	4 cut(s)	33, 42, 55, 106
Hin1I	GRCGYC	1 cut(s)	436
Hin1II	CATG	3 cut(s)	270, 416, 422
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HpaII	CCGG	4 cut(s)	33, 42, 55, 106
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	3 cut(s)	148, 290, 364
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	4 cut(s)	212, 287, 440, 475
Hpy8I	GTNNAC	3 cut(s)	148, 290, 364
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	2 cut(s)	152, 348
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	2 cut(s)	224, 341
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 66, 323
HpyF3I	CTNAG	2 cut(s)	99, 210
HpySE526I	ACGT	1 cut(s)	436
Hsp92I	GRCGYC	1 cut(s)	436
Hsp92II	CATG	3 cut(s)	270, 416, 422
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	2 cut(s)	38, 44
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	327, 440
MaeII	ACGT	1 cut(s)	436
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	4 cut(s)	21, 175, 345, 382
MhlI	GDGCHC	3 cut(s)	62, 113, 468
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	4 cut(s)	33, 42, 55, 106
MspR9I	CCNGG	5 cut(s)	55, 56, 66, 106, 107
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	38, 66, 323
NciI	CCSGG	4 cut(s)	55, 56, 106, 107
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	270, 416, 422
NlaIV	GGNNCC	6 cut(s)	40, 52, 59, 60, 110, 111
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	134, 325
PpuMI	RGGWCCY	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	6 cut(s)	40, 52, 59, 60, 110, 111
PspOMI	GGGCCC	2 cut(s)	58, 109
PspPI	GGNCC	5 cut(s)	50, 58, 59, 109, 110
PspPPI	RGGWCCY	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	468
SalI	GTCGAC	1 cut(s)	146
SatI	GCNGC	2 cut(s)	133, 324
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	5 cut(s)	50, 58, 59, 109, 110
ScrFI	CCNGG	5 cut(s)	55, 56, 66, 106, 107
SduI	GDGCHC	3 cut(s)	62, 113, 468
SetI	ASST	7 cut(s)	52, 76, 164, 202, 255, 439, 468
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	506
SfuI	TTCGAA	1 cut(s)	138
SinI	GGWCC	1 cut(s)	50
SmaI	CCCGGG	2 cut(s)	56, 107
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
SsiI	CCGC	4 cut(s)	83, 130, 133, 323
SspMI	CTAG	2 cut(s)	327, 440
SstI	GAGCTC	1 cut(s)	468
StyD4I	CCNGG	5 cut(s)	53, 54, 64, 104, 105
TaaI	ACNGT	2 cut(s)	152, 348
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	138, 147
TauI	GCSGC	2 cut(s)	135, 326
TscAI	CASTG	1 cut(s)	231
TspDTI	ATGAA	1 cut(s)	81
TspMI	CCCGGG	2 cut(s)	54, 105
TspRI	CASTG	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	50
XbaI	TCTAGA	1 cut(s)	439
XceI	RCATGY	1 cut(s)	416
XmaI	CCCGGG	2 cut(s)	54, 105
XmiI	GTMKAC	2 cut(s)	147, 363
XspI	CTAG	2 cut(s)	327, 440
ZraI	GACGTC	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.