Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001144.1

Orthogroup ID

OG0005137

Physical Location & Seq

Genomic Coordinates Forward (+)

45879 .. 48803

Gene Structure 2925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001144.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggccggagtagcccaaccaccgaagagaggattaccaccgcctcctcgccgtcgatttgaccctgtcgatcgcgaaaagacttgccccttattgcttcgagttttcactaaggctggaagccatcatgtcaatgatgattttgcagtgagaggcaaggagccgaaggatgaggttcaaatttatacatggaaggatgcttcacttcgtgagttaactgatctggtcaaagaggttgcccccgcagcaagacggaggaatgcaaaactgtcctttgcttttgtatatccagataaacgtggccgtttcgtcgtcagagaggtggggcaaaccttttcttttggaaatggaagactcgatgatggcaagactttggctgagcttggctttgagatcggagactacttggacgtggcaattatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000228 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0000785 GO:0000790 GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0003824 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006464 GO:0006476 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016569 GO:0016570 GO:0016575 GO:0016580 GO:0016604 GO:0016607 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033119 GO:0033558 GO:0033993 GO:0034641 GO:0035601 GO:0036211 GO:0040029 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043484 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045292 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061574 GO:0065007 GO:0070013 GO:0070822 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0098732 GO:0140096 GO:0140110 GO:1901360 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

SAP18

Protein Analysis

141

Amino Acids

15.91

Weight (kDa)

9.51

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45640 AT2G45640
fragaria_vesca	FvH4_5g01190 FvH4_7g12660
malus_domestica	MD02G1197700.v1.1 MD04G1070900.v1.1
prunus_persica	Prupe.2G150900_v2.0.a1 Prupe.5G087000_v2.0.a1
pyrus_communis	pycom02g16140 pycom04g06410
rosa_chinensis	RchiOBHm_Chr1g0351651 RchiOBHm_Chr7g0199901
rosa_laevigata	RLG00000003761 RLG00000028392
rosa_multiflora	Rmu_co8389151.1_g000001 Rmu_sc0001144.1_g000006 Rmu_sc0002748.1_g000010
rosa_roxburghii	Rroxscaffold_3G00256390
rosa_rugosa	Rorug01G0219900 Rorug01G0220000 Rorug07G0057000
rosa_samantha	Rh1AG234400 Rh1BG205000 Rh1CG219100 Rh1DG232000 Rh7AG182300 Rh7CG191800 Rh7DG185100
rosa_wichuraiana	Rw1G020410 Rw7G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	41, 243
AcoI	YGGCCR	2 cut(s)	3, 301
AcsI	RAATTY	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	179
AjiI	CACGTC	1 cut(s)	412
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	393
AoxI	GGCC	2 cut(s)	3, 301
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	2 cut(s)	132, 356
BceAI	ACGGC	2 cut(s)	36, 288
BcoDI	GTCTC	1 cut(s)	393
BisI	GCNGC	1 cut(s)	246
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	247
BmgBI	CACGTC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	162
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	358
Bpu1102I	GCTNAGC	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	175, 202
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	369
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	5, 303
BsiEI	CGRYCG	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	5, 303
Bsp143I	GATC	3 cut(s)	70, 220, 393
Bsp1720I	GCTNAGC	1 cut(s)	378
Bsp68I	TCGCGA	1 cut(s)	75
BspACI	CCGC	2 cut(s)	41, 243
BspANI	GGCC	2 cut(s)	5, 303
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	162
BssMI	GATC	3 cut(s)	70, 220, 393
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	111, 378
BstF5I	GGATG	2 cut(s)	175, 202
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	3 cut(s)	73, 223, 396
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	3 cut(s)	70, 220, 393
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 245
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	257
BstV2I	GAAGAC	1 cut(s)	358
BsuRI	GGCC	2 cut(s)	5, 303
BtrI	CACGTC	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	175, 202
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
BtuMI	TCGCGA	1 cut(s)	75
CviAII	CATG	2 cut(s)	128, 189
CviJI	RGCY	9 cut(s)	5, 14, 116, 123, 163, 303, 377, 382, 387
CviKI_1	RGCY	9 cut(s)	5, 14, 116, 123, 163, 303, 377, 382, 387
DdeI	CTNAG	2 cut(s)	111, 378
DpnI	GATC	3 cut(s)	72, 222, 395
DpnII	GATC	3 cut(s)	70, 220, 393
DraIII	CACNNNGTG	1 cut(s)	209
EaeI	YGGCCR	2 cut(s)	3, 301
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
FaeI	CATG	2 cut(s)	131, 192
FaiI	YATR	5 cut(s)	129, 186, 190, 286, 422
FatI	CATG	2 cut(s)	127, 188
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	2 cut(s)	182, 209
Fsp4HI	GCNGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	5, 303
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	2 cut(s)	131, 192
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	354
HpaI	GTTAAC	1 cut(s)	216
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	317, 398
Hpy188III	TCNNGA	3 cut(s)	74, 209, 290
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	2 cut(s)	57, 314
HpyAV	CCTTC	2 cut(s)	160, 187
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	2 cut(s)	298, 411
HpyCH4V	TGCA	2 cut(s)	146, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 245
HpyF3I	CTNAG	2 cut(s)	111, 378
HpySE526I	ACGT	2 cut(s)	298, 411
Hsp92II	CATG	2 cut(s)	131, 192
KspAI	GTTAAC	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	70, 220, 393
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	5 cut(s)	19, 78, 102, 209, 303
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	187
MaeII	ACGT	2 cut(s)	298, 411
MalI	GATC	3 cut(s)	72, 222, 395
MboI	GATC	3 cut(s)	70, 220, 393
MboII	GAAGA	2 cut(s)	37, 363
MluCI	AATT	2 cut(s)	180, 417
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	8 cut(s)	23, 54, 57, 146, 166, 226, 249, 313
MseI	TTAA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	265
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	11, 245
NdeII	GATC	3 cut(s)	70, 220, 393
NlaIII	CATG	2 cut(s)	131, 192
NlaIV	GGNNCC	1 cut(s)	162
NruI	TCGCGA	1 cut(s)	75
PctI	GAATGC	1 cut(s)	265
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	247
Ple19I	CGATCG	1 cut(s)	73
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	65
PvuI	CGATCG	1 cut(s)	73
RruI	TCGCGA	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	3 cut(s)	70, 220, 393
SchI	GAGTC	1 cut(s)	348
SetI	ASST	7 cut(s)	177, 237, 301, 324, 335, 384, 414
SfaNI	GCATC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	2 cut(s)	180, 417
SsiI	CCGC	2 cut(s)	41, 243
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	2 cut(s)	301, 414
TaqI	TCGA	4 cut(s)	55, 69, 100, 357
TasI	AATT	2 cut(s)	180, 417
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	1 cut(s)	245
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	1 cut(s)	153
Tth111I	GACNNNGTC	1 cut(s)	65
XapI	RAATTY	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.