pycom02g16140

Histone deacetylase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0005137
Physical Location & Seq
Forward (+)
13223085 .. 13225532
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16140.1

Sequence Viewer

Length: 393 bp
ATGGCTGAAGCAGCACAAGGTCCACGGAGAGCATTGCCCCCACCGGGAAGAGGCCCTCGATTCGGCCCCATTGATCGCGAAAAGACTTGTCCCTTATTGCTTCGAGTTTTCACGAAGACTGGAAGTCATCATACCAATGCAGATTTTGCAGTGAGAGGGAAGGAGCCCAAGGATGAAGTTCAAATTTATACATGGAAGGATGCTACTCTCCGTGAGTTAACCGATCTGGTCAAAGAGGTTGCTCCTGCAGCTAGAAGGAGGAATGCAAGACTTTCTTTTGCTTTCGTATATCCTGATAAACATGGCGATTTCGTAGTCAGAGAGGCACGGAAGAGTTATATCTTCTATCCTGACTCTCTTCAGAATCTTGTCCCAAGTCATTTTTTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
SAP18

Protein Analysis

131

Amino Acids

14.84

Weight (kDa)

9.71

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP18 PF06487 24 - 108 6.8e-32 Sin3 associated polypeptide p18 (SAP18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 78
AcsI RAATTY 1 cut(s) 183
AcuI CTGAAG 2 cut(s) 27, 344
AfiI CCNNNNNNNGG 3 cut(s) 44, 50, 62
AgsI TTSAA 1 cut(s) 182
AhdI GACNNNNNGTC 1 cut(s) 123
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AoxI GGCC 2 cut(s) 52, 64
ApeKI GCWGC 2 cut(s) 11, 248
ApoI RAATTY 1 cut(s) 183
AspS9I GGNCC 3 cut(s) 20, 53, 65
AsuC2I CCSGG 1 cut(s) 45
AvaII GGWCC 1 cut(s) 20
BanII GRGCYC 1 cut(s) 168
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 23, 260
BcnI CCSGG 1 cut(s) 45
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 2 cut(s) 12, 249
BlsI GCNGC 2 cut(s) 13, 250
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 20
BmeRI GACNNNNNGTC 1 cut(s) 123
BmgT120I GGNCC 3 cut(s) 20, 53, 65
BmiI GGNNCC 2 cut(s) 67, 165
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 23, 168
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 50, 62
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 23, 168
BseGI GGATG 2 cut(s) 178, 205
BseLI CCNNNNNNNGG 3 cut(s) 44, 50, 62
BseMI GCAATG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 2 cut(s) 23, 260
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 54, 66
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 2 cut(s) 75, 356
BslI CCNNNNNNNGG 3 cut(s) 44, 50, 62
BsmFI GGGAC 2 cut(s) 75, 356
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 2 cut(s) 54, 66
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 73, 223
Bsp68I TCGCGA 1 cut(s) 78
BspANI GGCC 2 cut(s) 54, 66
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 67, 165
BspMAI CTGCAG 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 32
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 23, 168
BssMI GATC 2 cut(s) 73, 223
BssT1I CCWWGG 1 cut(s) 168
Bst6I CTCTTC 3 cut(s) 43, 326, 363
BstAPI GCANNNNNTGC 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 2 cut(s) 178, 205
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 2 cut(s) 76, 226
BstMBI GATC 2 cut(s) 73, 223
BstMWI GCNNNNNNNGC 3 cut(s) 11, 146, 248
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 23, 260
BstV2I GAAGAC 1 cut(s) 122
BsuRI GGCC 2 cut(s) 54, 66
BtgI CCRYGG 1 cut(s) 23
BtsCI GGATG 2 cut(s) 178, 205
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
BtuMI TCGCGA 1 cut(s) 78
Cfr13I GGNCC 3 cut(s) 20, 53, 65
CviAII CATG 2 cut(s) 192, 302
CviJI RGCY 5 cut(s) 5, 54, 66, 166, 251
CviKI_1 RGCY 5 cut(s) 5, 54, 66, 166, 251
DpnI GATC 2 cut(s) 75, 225
DpnII GATC 2 cut(s) 73, 223
DriI GACNNNNNGTC 1 cut(s) 123
Eam1104I CTCTTC 3 cut(s) 43, 326, 363
Eam1105I GACNNNNNGTC 1 cut(s) 123
EarI CTCTTC 3 cut(s) 43, 326, 363
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 27, 344
EcoO109I RGGNCCY 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 195, 305
FaiI YATR 6 cut(s) 132, 189, 193, 289, 303, 339
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FaqI GGGAC 2 cut(s) 75, 356
FatI CATG 2 cut(s) 191, 301
Fnu4HI GCNGC 2 cut(s) 12, 249
FokI GGATG 2 cut(s) 185, 212
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 12, 249
FspBI CTAG 1 cut(s) 252
GluI GCNGC 2 cut(s) 12, 249
HaeIII GGCC 2 cut(s) 54, 66
HapII CCGG 1 cut(s) 44
Hin1II CATG 2 cut(s) 195, 305
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 3 cut(s) 60, 353, 364
HpaI GTTAAC 1 cut(s) 219
HpaII CCGG 1 cut(s) 44
Hpy166II GTNNAC 2 cut(s) 23, 219
Hpy188I TCNGA 2 cut(s) 320, 363
Hpy188III TCNNGA 4 cut(s) 77, 112, 293, 350
Hpy8I GTNNAC 2 cut(s) 23, 219
HpyAV CCTTC 3 cut(s) 154, 190, 249
HpyCH4V TGCA 4 cut(s) 140, 149, 248, 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 146, 248
Hsp92II CATG 2 cut(s) 195, 305
KspAI GTTAAC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 73, 223
LmnI GCTCC 2 cut(s) 163, 247
LpnPI CCDG 6 cut(s) 57, 105, 212, 258, 306, 363
Lsp1109I GCAGC 2 cut(s) 23, 260
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 252
MalI GATC 2 cut(s) 75, 225
MboI GATC 2 cut(s) 73, 223
MboII GAAGA 5 cut(s) 60, 127, 334, 343, 350
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 1 cut(s) 183
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 6 cut(s) 44, 66, 149, 229, 252, 316
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 1 cut(s) 135
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 268
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 3 cut(s) 11, 146, 248
NciI CCSGG 1 cut(s) 45
NdeII GATC 2 cut(s) 73, 223
NlaIII CATG 2 cut(s) 195, 305
NlaIV GGNNCC 2 cut(s) 67, 165
NruI TCGCGA 1 cut(s) 78
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 60, 364
PkrI GCNGC 2 cut(s) 13, 250
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 67, 165
PspPI GGNCC 3 cut(s) 20, 53, 65
PstI CTGCAG 1 cut(s) 250
RruI TCGCGA 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 2 cut(s) 12, 249
Sau3AI GATC 2 cut(s) 73, 223
Sau96I GGNCC 3 cut(s) 20, 53, 65
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 45
SduI GDGCHC 1 cut(s) 168
SetI ASST 3 cut(s) 22, 240, 253
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 1 cut(s) 183
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 43
StyI CCWWGG 1 cut(s) 168
TaqI TCGA 2 cut(s) 58, 103
TasI AATT 1 cut(s) 183
TfiI GAWTC 2 cut(s) 60, 364
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 1 cut(s) 156
TseI GCWGC 2 cut(s) 11, 248
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 3 cut(s) 40, 200, 343
TspRI CASTG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 1 cut(s) 183
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.