Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005137

Physical Location & Seq

Genomic Coordinates Reverse (-)

52385340 .. 52387323

Gene Structure 1984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAGAGGAGAAGCAGAGACGAAAAGATGGGCGGAGGAGGAGGACCTGGTCCCCGAGGTGGTCCACCAGGTCGACCTCTCCCTCCCCCTCCTCCTCTTCCTCAGTCCCGCGGCCCACCTCCCCCGCCGCCCCGCCGCTTCGAACCCGTCGACCGTGAAAAGATTGGTGGTCATCACAATCAGGAGGACTTTGCAGTGAGAGGCAAAGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCCACACTACGCGAACTAACTGATCTTGTCAAGGAGATTGCCCCAGCGGCTAGGAGAAGAAATGCAAAACTGTCATTTGCTTTTGTATACCCTGACAAGGGTGGTCGTTTTGTCTTGAAACAGGCGGGGATAACACATGCTTATGGAAACATGGGGAGACGTCTAGATGACAGCAAGTCCTTGAATGAGCTCAAGTTCCAGATTGGAGATTATTTGGATGTGGCAGTCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0031974 GO:0031981 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

SAP18

Protein Analysis

160

Amino Acids

17.65

Weight (kDa)

9.81

Isoelectric Point (pI)

64.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP18	PF06487	55 - 158	1.1e-29	Sin3 associated polypeptide p18 (SAP18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45640 AT2G45640
fragaria_vesca	FvH4_5g01190 FvH4_7g12660
malus_domestica	MD02G1197700.v1.1 MD04G1070900.v1.1
prunus_persica	Prupe.2G150900_v2.0.a1 Prupe.5G087000_v2.0.a1
pyrus_communis	pycom02g16140 pycom04g06410
rosa_chinensis	RchiOBHm_Chr1g0351651 RchiOBHm_Chr7g0199901
rosa_laevigata	RLG00000003761 RLG00000028392
rosa_multiflora	Rmu_co8389151.1_g000001 Rmu_sc0001144.1_g000006 Rmu_sc0002748.1_g000010
rosa_roxburghii	Rroxscaffold_3G00256390
rosa_rugosa	Rorug01G0219900 Rorug01G0220000 Rorug07G0057000
rosa_samantha	Rh1AG234400 Rh1BG205000 Rh1CG219100 Rh1DG232000 Rh7AG182300 Rh7CG191800 Rh7DG185100
rosa_wichuraiana	Rw1G020410 Rw7G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	409
AccI	GTMKAC	3 cut(s)	73, 150, 333
AccII	CGCG	2 cut(s)	111, 258
AciI	CCGC	9 cut(s)	33, 109, 111, 125, 128, 133, 136, 293, 371
AcyI	GRCGYC	1 cut(s)	406
AfiI	CCNNNNNNNGG	3 cut(s)	59, 343, 344
AgsI	TTSAA	2 cut(s)	364, 430
AhdI	GACNNNNNGTC	1 cut(s)	421
AjnI	CCWGG	2 cut(s)	46, 67
AluBI	AGCT	1 cut(s)	436
AluI	AGCT	1 cut(s)	436
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	2 cut(s)	12, 397
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	1 cut(s)	112
AspS9I	GGNCC	4 cut(s)	44, 50, 62, 113
AsuII	TTCGAA	1 cut(s)	141
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	3 cut(s)	44, 50, 62
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	438
BccI	CCATC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	48, 69
BcoDI	GTCTC	2 cut(s)	12, 397
BfaI	CTAG	2 cut(s)	297, 410
BfmI	CTRYAG	1 cut(s)	476
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	4 cut(s)	112, 128, 136, 294
BlsI	GCNGC	4 cut(s)	113, 129, 137, 295
Bme1390I	CCNGG	2 cut(s)	48, 69
Bme18I	GGWCC	3 cut(s)	44, 50, 62
BmeRI	GACNNNNNGTC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	4 cut(s)	44, 50, 62, 113
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	2 cut(s)	48, 69
BmsI	GCATC	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	406
BsaJI	CCNNGG	2 cut(s)	55, 109
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 343, 344
BseBI	CCWGG	2 cut(s)	48, 69
BseDI	CCNNGG	2 cut(s)	55, 109
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	3 cut(s)	59, 343, 344
BseMII	CTCAG	1 cut(s)	116
BseRI	GAGGAG	5 cut(s)	22, 51, 54, 81, 84
BseYI	CCCAGC	1 cut(s)	289
Bsh1236I	CGCG	2 cut(s)	111, 258
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	54
BslFI	GGGAC	2 cut(s)	36, 91
BslI	CCNNNNNNNGG	3 cut(s)	59, 343, 344
BsmAI	GTCTC	2 cut(s)	12, 397
BsmBI	CGTCTC	2 cut(s)	12, 397
BsmFI	GGGAC	2 cut(s)	36, 91
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	54
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	9 cut(s)	33, 109, 111, 125, 128, 133, 136, 293, 371
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	115
BspFNI	CGCG	2 cut(s)	111, 258
BspLI	GGNNCC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	55, 109
BssMI	GATC	1 cut(s)	268
BssNAI	GTATAC	1 cut(s)	334
BssNI	GRCGYC	1 cut(s)	406
Bst1107I	GTATAC	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	48, 69
Bst4CI	ACNGT	2 cut(s)	155, 318
Bst6I	CTCTTC	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	406
BstBI	TTCGAA	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	2 cut(s)	111, 258
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	12, 397
BstMBI	GATC	1 cut(s)	268
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	2 cut(s)	48, 69
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	46, 67
BstSFI	CTRYAG	1 cut(s)	476
BstUI	CGCG	2 cut(s)	111, 258
BstZ17I	GTATAC	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	469
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
Cfr13I	GGNCC	4 cut(s)	44, 50, 62, 113
Cfr42I	CCGCGG	1 cut(s)	112
CsiI	ACCWGGT	2 cut(s)	46, 67
CviAII	CATG	3 cut(s)	237, 383, 397
CviJI	RGCY	3 cut(s)	114, 296, 436
CviKI_1	RGCY	3 cut(s)	114, 296, 436
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DriI	GACNNNNNGTC	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	102
Eam1105I	GACNNNNNGTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	3 cut(s)	44, 50, 62
Eco53kI	GAGCTC	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	436
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	46, 67
EcoT38I	GRGCYC	1 cut(s)	438
Esp3I	CGTCTC	2 cut(s)	12, 397
FaeI	CATG	3 cut(s)	240, 386, 400
FaiI	YATR	7 cut(s)	234, 238, 334, 384, 390, 398, 478
FaqI	GGGAC	2 cut(s)	36, 91
FatI	CATG	3 cut(s)	236, 382, 396
FauI	CCCGC	4 cut(s)	116, 132, 140, 364
FblI	GTMKAC	3 cut(s)	73, 150, 333
Fnu4HI	GCNGC	4 cut(s)	112, 128, 136, 294
FokI	GGATG	1 cut(s)	476
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	4 cut(s)	112, 128, 136, 294
FspBI	CTAG	2 cut(s)	297, 410
GluI	GCNGC	4 cut(s)	112, 128, 136, 294
GsaI	CCCAGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	406
Hin1II	CATG	3 cut(s)	240, 386, 400
HincII	GTYRAC	2 cut(s)	74, 151
HindII	GTYRAC	2 cut(s)	74, 151
Hpy166II	GTNNAC	4 cut(s)	65, 74, 151, 334
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	4 cut(s)	182, 361, 410, 445
Hpy8I	GTNNAC	4 cut(s)	65, 74, 151, 334
Hpy99I	CGWCG	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	155, 318
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	2 cut(s)	194, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	406
Hsp92I	GRCGYC	1 cut(s)	406
Hsp92II	CATG	3 cut(s)	240, 386, 400
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	33, 54, 60, 81, 167, 303, 351, 353, 458
LweI	GCATC	1 cut(s)	235
MabI	ACCWGGT	2 cut(s)	46, 67
MaeI	CTAG	2 cut(s)	297, 410
MaeII	ACGT	1 cut(s)	406
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	2 cut(s)	89, 315
MhlI	GDGCHC	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	2 cut(s)	111, 293
MspR9I	CCNGG	2 cut(s)	48, 69
MvaI	CCWGG	2 cut(s)	48, 69
MvnI	CGCG	2 cut(s)	111, 258
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	3 cut(s)	240, 386, 400
NlaIV	GGNNCC	1 cut(s)	52
NspI	RCATGY	1 cut(s)	386
NspV	TTCGAA	1 cut(s)	141
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PflFI	GACNNNGTC	1 cut(s)	48
PkrI	GCNGC	4 cut(s)	113, 129, 137, 295
PpuMI	RGGWCCY	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	2 cut(s)	46, 67
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	2 cut(s)	46, 67
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	4 cut(s)	44, 50, 62, 113
PspPPI	RGGWCCY	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	387
SacI	GAGCTC	1 cut(s)	438
SacII	CCGCGG	1 cut(s)	112
SalI	GTCGAC	2 cut(s)	72, 149
SatI	GCNGC	4 cut(s)	112, 128, 136, 294
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	4 cut(s)	44, 50, 62, 113
ScrFI	CCNGG	2 cut(s)	48, 69
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	8 cut(s)	49, 61, 73, 79, 121, 225, 409, 438
SexAI	ACCWGGT	2 cut(s)	46, 67
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	476
Sfr303I	CCGCGG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	141
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	3 cut(s)	44, 50, 62
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SsiI	CCGC	9 cut(s)	33, 109, 111, 125, 128, 133, 136, 293, 371
SspMI	CTAG	2 cut(s)	297, 410
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	46, 67
TaaI	ACNGT	2 cut(s)	155, 318
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	3 cut(s)	73, 141, 150
TauI	GCSGC	4 cut(s)	114, 130, 138, 296
TscAI	CASTG	1 cut(s)	201
TspRI	CASTG	1 cut(s)	201
Tth111I	GACNNNGTC	1 cut(s)	48
VpaK11BI	GGWCC	3 cut(s)	44, 50, 62
XbaI	TCTAGA	1 cut(s)	409
XceI	RCATGY	1 cut(s)	386
XmiI	GTMKAC	3 cut(s)	73, 150, 333
XspI	CTAG	2 cut(s)	297, 410
ZraI	GACGTC	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.