Rh7DG185100

Histone deacetylase complex subunit SAP18-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005137
Physical Location & Seq
Forward (+)
17229465 .. 17231191
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG185100.1

Sequence Viewer

Length: 357 bp
ATGCAGACTTGCCCTTTGTTGCTTCGGGTCTTCACTAAGATTGGAGGTCATCACAATCAGGAGGACTTTGCAGTGAGAGGCAAAGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCCACACTTCGCGAACTAACTGATCTTGTCAAGGAGATTGCCCCAGCGGCTAGGAGAAGAAATGCAAAACTGTCATTTGCTTTTGTATACCCTGACAAGGGTGGTCGTTTTGTCTTGAAACAGGCGGGGATAACACATGCTTATGGAAACATGGGGAGACGTCTAGATGACAGCAAGTCCTTGAATGAGCTCAAGTTCCAGATTGGAGATTATTTGGATGTGGCAGTCCTATAG

Protein Analysis

118

Amino Acids

13.42

Weight (kDa)

9.3

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP18 PF06487 2 - 117 6.1e-38 Sin3 associated polypeptide p18 (SAP18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 210
AccII CGCG 1 cut(s) 135
AciI CCGC 2 cut(s) 170, 248
AcyI GRCGYC 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 220, 221
AgsI TTSAA 2 cut(s) 241, 307
AhdI GACNNNNNGTC 1 cut(s) 298
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 274
ArsI GACNNNNNNTTYG 1 cut(s) 30
BanII GRGCYC 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 2 cut(s) 174, 287
BfmI CTRYAG 1 cut(s) 353
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmeRI GACNNNNNGTC 1 cut(s) 298
BmsI GCATC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 283
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 221
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 2 cut(s) 220, 221
BseYI CCCAGC 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 220, 221
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 1 cut(s) 145
Bsp68I TCGCGA 1 cut(s) 135
BspACI CCGC 2 cut(s) 170, 248
BspFNI CGCG 1 cut(s) 135
BssMI GATC 1 cut(s) 145
BssNAI GTATAC 1 cut(s) 211
BssNI GRCGYC 1 cut(s) 283
Bst1107I GTATAC 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 353
BstUI CGCG 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 22
BstZ17I GTATAC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
BtuMI TCGCGA 1 cut(s) 135
CviAII CATG 3 cut(s) 114, 260, 274
CviJI RGCY 2 cut(s) 173, 313
CviKI_1 RGCY 2 cut(s) 173, 313
DdeI CTNAG 1 cut(s) 36
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DriI GACNNNNNGTC 1 cut(s) 298
Eam1105I GACNNNNNGTC 1 cut(s) 298
Ecl136II GAGCTC 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 315
Eco53kI GAGCTC 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 3 cut(s) 117, 263, 277
FaiI YATR 7 cut(s) 111, 115, 211, 261, 267, 275, 355
FatI CATG 3 cut(s) 113, 259, 273
FauI CCCGC 1 cut(s) 241
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 2 cut(s) 174, 287
GluI GCNGC 1 cut(s) 171
GsaI CCCAGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 283
Hin1II CATG 3 cut(s) 117, 263, 277
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 5 cut(s) 59, 134, 238, 287, 322
Hpy8I GTNNAC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 4, 71, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 283
Hsp92I GRCGYC 1 cut(s) 283
Hsp92II CATG 3 cut(s) 117, 263, 277
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 5 cut(s) 44, 180, 228, 230, 335
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 174, 287
MaeII ACGT 1 cut(s) 283
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 22, 192
MhlI GDGCHC 1 cut(s) 315
MnlI CCTC 4 cut(s) 38, 55, 71, 91
MslI CAYNNNNRTG 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 170
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 117, 263, 277
NruI TCGCGA 1 cut(s) 135
NspI RCATGY 1 cut(s) 263
PkrI GCNGC 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 166
RruI TCGCGA 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 315
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 145
SduI GDGCHC 1 cut(s) 315
SetI ASST 4 cut(s) 49, 102, 286, 315
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SsiI CCGC 2 cut(s) 170, 248
SspMI CTAG 2 cut(s) 174, 287
SstI GAGCTC 1 cut(s) 315
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 1 cut(s) 286
TauI GCSGC 1 cut(s) 173
TscAI CASTG 1 cut(s) 78
TspRI CASTG 1 cut(s) 78
XbaI TCTAGA 1 cut(s) 286
XceI RCATGY 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 2 cut(s) 174, 287
ZraI GACGTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.