AT2G45640

Sin3 associated polypeptide p18 (SAP18)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005137
Physical Location & Seq
Reverse (-)
18799528 .. 18801471
1944 bp
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UTR
Exon/CDS
Intron
AT2G45640.2

Sequence Viewer

Length: 459 bp
ATGGCTGAAGCAGCGAGAAGACAAGGTGGTGGGAGACCATTACCGCCACCTCCGAGAGGCGTTAACCAACAACCTCCTCGCCCTAAACCTGAACCTGTCGATCGTGAAAAGACATGTCCCCTTCTTCTTCGTGTTTTCACCAAGAGTGGTGGTCATCATACTAGTGAAGATTATGCTGTGAGAGGCAAAGAACCAAAGGATGAAGTTCAAATCTACACTTGGAAAGATGCCAGTCTTCGCGAGCTAACAGATTTGGTTAAAGAAGTTTCTGTAGCAGCTAGGAGAAGGAATGCTAGATTGTCTTTTGCGTTTGTTTATCCTAACAATAAAGGTGGCTATAATGTGAGAGAGGTTGGGGAGACGATGGCTTATCCAAACCGAAAACAACCAGATGACAGTAAAACGCTTTCCGAACTTCCGTTTGAGATTGGAGATTATCTGGATGTGGCAATTTACTAG

Protein Analysis

152

Amino Acids

17.16

Weight (kDa)

9.21

Isoelectric Point (pI)

54.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP18 PF06487 33 - 148 1.2e-37 Sin3 associated polypeptide p18 (SAP18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 240
AciI CCGC 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 209
AhlI ACTAGT 1 cut(s) 161
AluBI AGCT 2 cut(s) 244, 278
AluI AGCT 2 cut(s) 244, 278
Alw26I GTCTC 2 cut(s) 28, 353
ApeKI GCWGC 2 cut(s) 11, 275
AsuHPI GGTGA 1 cut(s) 130
BbsI GAAGAC 2 cut(s) 25, 227
BbvI GCAGC 2 cut(s) 23, 287
BccI CCATC 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 28, 353
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 4 cut(s) 162, 279, 294, 457
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 2 cut(s) 12, 276
BlsI GCNGC 2 cut(s) 13, 277
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 2 cut(s) 25, 227
BsaI GGTCTC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 231
BseGI GGATG 2 cut(s) 205, 448
BseLI CCNNNNNNNGG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 231
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 23, 287
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 2 cut(s) 28, 353
BsmBI CGTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 1 cut(s) 295
Bso31I GGTCTC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 100
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 1 cut(s) 44
BspFNI CGCG 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 231
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 242
BstENI CCTNNNNNAGG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 205, 448
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 2 cut(s) 28, 353
BstMBI GATC 1 cut(s) 100
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 23, 287
BstV2I GAAGAC 2 cut(s) 25, 227
BtsCI GGATG 2 cut(s) 205, 448
BtuMI TCGCGA 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 242
CspCI CAANNNNNGTGG 4 cut(s) 130, 165, 313, 348
CviAII CATG 1 cut(s) 114
CviJI RGCY 5 cut(s) 5, 244, 278, 336, 368
CviKI_1 RGCY 5 cut(s) 5, 244, 278, 336, 368
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eco31I GGTCTC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 27
EcoNI CCTNNNNNAGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 1 cut(s) 117
FaiI YATR 4 cut(s) 115, 159, 174, 339
FaqI GGGAC 1 cut(s) 102
FatI CATG 1 cut(s) 113
Fnu4HI GCNGC 2 cut(s) 12, 276
FokI GGATG 2 cut(s) 212, 455
Fsp4HI GCNGC 2 cut(s) 12, 276
FspBI CTAG 4 cut(s) 162, 279, 294, 457
GluI GCNGC 2 cut(s) 12, 276
Hin1II CATG 1 cut(s) 117
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HpaI GTTAAC 1 cut(s) 64
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 54, 412
Hpy188III TCNNGA 3 cut(s) 104, 239, 440
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 131, 279
HpyCH4III ACNGT 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
Hsp92II CATG 1 cut(s) 117
KspAI GTTAAC 1 cut(s) 64
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 5 cut(s) 102, 108, 244, 402, 425
Lsp1109I GCAGC 2 cut(s) 23, 287
LweI GCATC 1 cut(s) 217
MaeI CTAG 4 cut(s) 162, 279, 294, 457
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 5 cut(s) 30, 116, 119, 179, 227
MluCI AATT 1 cut(s) 450
MnlI CCTC 6 cut(s) 50, 60, 84, 87, 176, 343
MseI TTAA 2 cut(s) 63, 258
MslI CAYNNNNRTG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 295
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 117
NruI TCGCGA 1 cut(s) 240
NspI RCATGY 1 cut(s) 117
PciI ACATGT 1 cut(s) 113
PctI GAATGC 1 cut(s) 295
PkrI GCNGC 2 cut(s) 13, 277
Ple19I CGATCG 1 cut(s) 103
PscI ACATGT 1 cut(s) 113
PvuI CGATCG 1 cut(s) 103
RruI TCGCGA 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 2 cut(s) 63, 258
SatI GCNGC 2 cut(s) 12, 276
Sau3AI GATC 1 cut(s) 100
SetI ASST 9 cut(s) 28, 52, 76, 91, 97, 246, 280, 334, 354
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 162
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 1 cut(s) 450
SsiI CCGC 1 cut(s) 44
SspMI CTAG 4 cut(s) 162, 279, 294, 457
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 450
Tru1I TTAA 2 cut(s) 63, 258
Tru9I TTAA 2 cut(s) 63, 258
TseI GCWGC 2 cut(s) 11, 275
TspDTI ATGAA 1 cut(s) 216
TspGWI ACGGA 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 54
XceI RCATGY 1 cut(s) 117
XspI CTAG 4 cut(s) 162, 279, 294, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.