MD02G1197700.v1.1

Histone deacetylase complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0005137
Physical Location & Seq
Forward (+)
19137077 .. 19140632
3556 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1197700.v1.1.491

Sequence Viewer

Length: 420 bp
ATGGCTGAAGGTCCAAGGAGAGCATTGCCTCCACCGGGAAGAGGCCCTCGATTCGGCCCCGTTGATCGCGAAAAGACTTGTCCCTTATTGCTTCGAGTATTCACGAAGACTGGAAGTCATCATACCAATGCAGATTTTGCAGTGAGAGGAAAGGAGCCCAAGGATGAAGTTCAAATTTATACATGGAAGGATGCTACTCTCCGTGAGTTAACCGATCTGGTCAAAGAGGTTGCTCCTGCAGCTAGAAGGAGGAATGCAAGACTTTCTTTTGCTTTCGTATATCCTGATAAACATGGCCATTTCGTAGTCAGAGAGGTGGGGAAGACATTGTCTAATGGAAATGGAAAATTAGACGATGGCAAAGTTTTGGCTGAACTTGGCTTTCAGATTGGAGATTACTTGGATGTGGCGATTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
SAP18

Protein Analysis

140

Amino Acids

15.48

Weight (kDa)

9.51

Isoelectric Point (pI)

19.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP18 PF06487 21 - 138 1.8e-43 Sin3 associated polypeptide p18 (SAP18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 295
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 1 cut(s) 27
AfiI CCNNNNNNNGG 3 cut(s) 35, 41, 53
AgsI TTSAA 1 cut(s) 173
AhdI GACNNNNNGTC 1 cut(s) 114
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
AoxI GGCC 3 cut(s) 43, 55, 295
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 174
AspS9I GGNCC 3 cut(s) 11, 44, 56
AsuC2I CCSGG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 11
BalI TGGCCA 1 cut(s) 297
BanII GRGCYC 1 cut(s) 159
BarI GAAGNNNNNNTAC 2 cut(s) 106, 138
BbsI GAAGAC 2 cut(s) 113, 329
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 350
BcnI CCSGG 1 cut(s) 36
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 11
BmeRI GACNNNNNGTC 1 cut(s) 114
BmgT120I GGNCC 3 cut(s) 11, 44, 56
BmiI GGNNCC 2 cut(s) 58, 156
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 2 cut(s) 113, 329
BpuMI CCSGG 1 cut(s) 36
BsaJI CCNNGG 2 cut(s) 14, 159
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 41, 53
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 14, 159
BseGI GGATG 3 cut(s) 169, 196, 409
BseLI CCNNNNNNNGG 3 cut(s) 35, 41, 53
BseMI GCAATG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 3 cut(s) 45, 57, 297
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 3 cut(s) 35, 41, 53
BsmFI GGGAC 1 cut(s) 66
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 3 cut(s) 45, 57, 297
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 2 cut(s) 64, 214
Bsp68I TCGCGA 1 cut(s) 69
BspANI GGCC 3 cut(s) 45, 57, 297
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 58, 156
BspMAI CTGCAG 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 23
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 14, 159
BssMI GATC 2 cut(s) 64, 214
BssT1I CCWWGG 2 cut(s) 14, 159
Bst6I CTCTTC 1 cut(s) 34
BstAPI GCANNNNNTGC 1 cut(s) 137
BstF5I GGATG 3 cut(s) 169, 196, 409
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 2 cut(s) 67, 217
BstMBI GATC 2 cut(s) 64, 214
BstMWI GCNNNNNNNGC 2 cut(s) 137, 239
BstSCI CCNGG 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 237
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 251
BstV2I GAAGAC 2 cut(s) 113, 329
BsuRI GGCC 3 cut(s) 45, 57, 297
BtsCI GGATG 3 cut(s) 169, 196, 409
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
BtuMI TCGCGA 1 cut(s) 69
Cfr13I GGNCC 3 cut(s) 11, 44, 56
CviAII CATG 2 cut(s) 183, 293
CviJI RGCY 8 cut(s) 5, 45, 57, 157, 242, 297, 371, 381
CviKI_1 RGCY 8 cut(s) 5, 45, 57, 157, 242, 297, 371, 381
DpnI GATC 2 cut(s) 66, 216
DpnII GATC 2 cut(s) 64, 214
DriI GACNNNNNGTC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 34
Eam1105I GACNNNNNGTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 14, 159
Eco24I GRGCYC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 44
EcoT14I CCWWGG 2 cut(s) 14, 159
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 2 cut(s) 14, 159
FaeI CATG 2 cut(s) 186, 296
FaiI YATR 6 cut(s) 123, 180, 184, 280, 294, 416
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FaqI GGGAC 1 cut(s) 66
FatI CATG 2 cut(s) 182, 292
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 3 cut(s) 176, 203, 416
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 243
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 3 cut(s) 45, 57, 297
HapII CCGG 1 cut(s) 35
Hin1II CATG 2 cut(s) 186, 296
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 1 cut(s) 51
HpaI GTTAAC 1 cut(s) 210
HpaII CCGG 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 2 cut(s) 311, 387
Hpy188III TCNNGA 3 cut(s) 68, 103, 284
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 2 cut(s) 181, 240
HpyCH4V TGCA 4 cut(s) 131, 140, 239, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 239
Hsp92II CATG 2 cut(s) 186, 296
KspAI GTTAAC 1 cut(s) 210
Kzo9I GATC 2 cut(s) 64, 214
LmnI GCTCC 2 cut(s) 154, 238
LpnPI CCDG 5 cut(s) 48, 96, 203, 249, 297
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 243
MalI GATC 2 cut(s) 66, 216
MboI GATC 2 cut(s) 64, 214
MboII GAAGA 3 cut(s) 51, 118, 334
MhlI GDGCHC 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 297
MluCI AATT 2 cut(s) 174, 347
MluNI TGGCCA 1 cut(s) 297
MnlI CCTC 7 cut(s) 35, 39, 57, 140, 220, 243, 307
Mox20I TGGCCA 1 cut(s) 297
MscI TGGCCA 1 cut(s) 297
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 297
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 259
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 137, 239
NciI CCSGG 1 cut(s) 36
NdeII GATC 2 cut(s) 64, 214
NlaIII CATG 2 cut(s) 186, 296
NlaIV GGNNCC 2 cut(s) 58, 156
NruI TCGCGA 1 cut(s) 69
PctI GAATGC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 51
PflFI GACNNNGTC 1 cut(s) 328
PkrI GCNGC 1 cut(s) 241
PspN4I GGNNCC 2 cut(s) 58, 156
PspPI GGNCC 3 cut(s) 11, 44, 56
PstI CTGCAG 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 328
RruI TCGCGA 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 2 cut(s) 64, 214
Sau96I GGNCC 3 cut(s) 11, 44, 56
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 159
SetI ASST 4 cut(s) 13, 231, 244, 318
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 2 cut(s) 174, 347
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 2 cut(s) 14, 159
TaqI TCGA 2 cut(s) 49, 94
TasI AATT 2 cut(s) 174, 347
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 1 cut(s) 147
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 180
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 147
Tth111I GACNNNGTC 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 1 cut(s) 174
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.