Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005137

Physical Location & Seq

Genomic Coordinates Forward (+)

9666558 .. 9669069

Gene Structure 2512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1070900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGAAGAGAAACAGAGACGAAAAGATGGGCGGGCCCGGTCCCCAGACGCGAGGCCCACCCGGAAGACAACTTCCGCCACCTCCTCCTCCGCCTCACTCCAGGGGTCCGCCGCCCCCGCCGCCTCGCCCCCGCTCCGAACCCATCGACCGTGAAAAGACTTGCCCTCTGCTGCTTCGGGTTTTCACTAAGATTGGAGCTCATCACAGTGAGGTGGACTTTGCAGTGAGAGGCAATGAACCCAAAGATGAGGTTCAAATTTATACATGGAAAGATGCAACACTTCGTGAGCTAACTGATCTCGTCAAAGAGATTGCTCCAGAGGCTAGGAGAAGAAATGCTAGACTGTCTTTTGCTTTTGTATACCCTGACAAGCGCGGTCGTTTTGTGGTGAAACAGGTTGGGATGACAAATTCTCATGGAAACGGGAGACAAGTGGATGAAAGCAAGGCACTGAATGATCTTAGCTTTCAGATTGGAGATTATTTGGACGTGGCGATTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0031974 GO:0031981 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

SAP18

Protein Analysis

169

Amino Acids

18.91

Weight (kDa)

9.66

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP18	PF06487	49 - 167	7.3e-43	Sin3 associated polypeptide p18 (SAP18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45640 AT2G45640
fragaria_vesca	FvH4_5g01190 FvH4_7g12660
malus_domestica	MD02G1197700.v1.1 MD04G1070900.v1.1
prunus_persica	Prupe.2G150900_v2.0.a1 Prupe.5G087000_v2.0.a1
pyrus_communis	pycom02g16140 pycom04g06410
rosa_chinensis	RchiOBHm_Chr1g0351651 RchiOBHm_Chr7g0199901
rosa_laevigata	RLG00000003761 RLG00000028392
rosa_multiflora	Rmu_co8389151.1_g000001 Rmu_sc0001144.1_g000006 Rmu_sc0002748.1_g000010
rosa_roxburghii	Rroxscaffold_3G00256390
rosa_rugosa	Rorug01G0219900 Rorug01G0220000 Rorug07G0057000
rosa_samantha	Rh1AG234400 Rh1BG205000 Rh1CG219100 Rh1DG232000 Rh7AG182300 Rh7CG191800 Rh7DG185100
rosa_wichuraiana	Rw1G020410 Rw7G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	2 cut(s)	52, 378
AciI	CCGC	9 cut(s)	33, 77, 92, 110, 113, 119, 122, 133, 378
AcsI	RAATTY	2 cut(s)	258, 412
AdeI	CACNNNGTG	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	257
AjiI	CACGTC	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	3 cut(s)	200, 292, 468
AluI	AGCT	3 cut(s)	200, 292, 468
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	2 cut(s)	12, 424
AoxI	GGCC	2 cut(s)	35, 55
ApaI	GGGCCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	258, 412
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	5 cut(s)	35, 36, 41, 56, 107
AsuC2I	CCSGG	2 cut(s)	39, 63
AsuHPI	GGTGA	1 cut(s)	403
AvaII	GGWCC	2 cut(s)	41, 107
BaeGI	GKGCMC	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	39, 202
BbsI	GAAGAC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	22, 152
BciT130I	CCWGG	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	39, 63
BcoDI	GTCTC	2 cut(s)	12, 424
BfaI	CTAG	2 cut(s)	327, 342
BfmI	CTRYAG	1 cut(s)	503
BisI	GCNGC	3 cut(s)	113, 122, 173
BlsI	GCNGC	3 cut(s)	114, 123, 174
Bme1390I	CCNGG	3 cut(s)	39, 63, 103
Bme18I	GGWCC	2 cut(s)	41, 107
BmgBI	CACGTC	1 cut(s)	493
BmgT120I	GGNCC	5 cut(s)	35, 36, 41, 56, 107
BmiI	GGNNCC	3 cut(s)	37, 43, 108
BmrFI	CCNGG	3 cut(s)	39, 63, 103
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	73
BpmI	CTGGAG	2 cut(s)	85, 303
BpuMI	CCSGG	2 cut(s)	39, 63
BsaJI	CCNNGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	411, 445
BseMI	GCAATG	1 cut(s)	241
BseRI	GAGGAG	2 cut(s)	75, 78
BseSI	GKGCMC	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	159
Bsh1236I	CGCG	2 cut(s)	52, 378
Bsh1285I	CGRYCG	2 cut(s)	151, 382
BshFI	GGCC	2 cut(s)	37, 57
BsiEI	CGRYCG	2 cut(s)	151, 382
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	39, 63
BslFI	GGGAC	1 cut(s)	27
BsmAI	GTCTC	2 cut(s)	12, 424
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	2 cut(s)	37, 57
Bsp120I	GGGCCC	1 cut(s)	35
Bsp1286I	GDGCHC	2 cut(s)	39, 202
Bsp143I	GATC	2 cut(s)	298, 460
BspACI	CCGC	9 cut(s)	33, 77, 92, 110, 113, 119, 122, 133, 378
BspANI	GGCC	2 cut(s)	37, 57
BspFNI	CGCG	2 cut(s)	52, 378
BspLI	GGNNCC	3 cut(s)	37, 43, 108
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	2 cut(s)	298, 460
BssNAI	GTATAC	1 cut(s)	364
Bst1107I	GTATAC	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	3 cut(s)	152, 209, 348
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	189, 464
BstF5I	GGATG	2 cut(s)	411, 445
BstFNI	CGCG	2 cut(s)	52, 378
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	2 cut(s)	301, 463
BstMAI	GTCTC	2 cut(s)	12, 424
BstMBI	GATC	2 cut(s)	298, 460
BstMCI	CGRYCG	2 cut(s)	151, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 121, 323
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	3 cut(s)	37, 61, 101
BstSFI	CTRYAG	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	39
BstUI	CGCG	2 cut(s)	52, 378
BstV1I	GCAGC	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	37, 57
BtrI	CACGTC	1 cut(s)	493
BtsCI	GGATG	2 cut(s)	411, 445
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	3 cut(s)	214, 231, 452
Cac8I	GCNNGC	1 cut(s)	35
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	5 cut(s)	35, 36, 41, 56, 107
CseI	GACGC	1 cut(s)	58
CviAII	CATG	2 cut(s)	267, 419
CviJI	RGCY	6 cut(s)	37, 57, 200, 292, 326, 468
CviKI_1	RGCY	6 cut(s)	37, 57, 200, 292, 326, 468
DdeI	CTNAG	2 cut(s)	189, 464
DpnI	GATC	2 cut(s)	300, 462
DpnII	GATC	2 cut(s)	298, 460
DraIII	CACNNNGTG	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
EciI	GGCGGA	3 cut(s)	66, 81, 99
Ecl136II	GAGCTC	1 cut(s)	200
Eco24I	GRGCYC	2 cut(s)	39, 202
Eco47I	GGWCC	2 cut(s)	41, 107
Eco53kI	GAGCTC	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	101
EcoT38I	GRGCYC	2 cut(s)	39, 202
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	270, 422
FaiI	YATR	5 cut(s)	264, 268, 364, 420, 505
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	266, 418
FauI	CCCGC	3 cut(s)	26, 126, 140
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	3 cut(s)	113, 122, 173
FokI	GGATG	2 cut(s)	418, 452
FriOI	GRGCYC	2 cut(s)	39, 202
Fsp4HI	GCNGC	3 cut(s)	113, 122, 173
FspBI	CTAG	2 cut(s)	327, 342
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	3 cut(s)	113, 122, 173
GsuI	CTGGAG	2 cut(s)	85, 303
HaeIII	GGCC	2 cut(s)	37, 57
HapII	CCGG	2 cut(s)	39, 63
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	270, 422
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	2 cut(s)	39, 63
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	2 cut(s)	217, 364
Hpy188I	TCNGA	2 cut(s)	139, 474
Hpy188III	TCNNGA	2 cut(s)	287, 320
Hpy8I	GTNNAC	2 cut(s)	217, 364
HpyCH4III	ACNGT	3 cut(s)	152, 209, 348
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	2 cut(s)	224, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 121, 323
HpyF3I	CTNAG	2 cut(s)	189, 464
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	270, 422
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	298, 460
LmnI	GCTCC	3 cut(s)	140, 197, 322
LpnPI	CCDG	8 cut(s)	52, 59, 76, 88, 115, 333, 381, 383
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	327, 342
MaeII	ACGT	1 cut(s)	492
MalI	GATC	2 cut(s)	300, 462
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	2 cut(s)	298, 460
MboII	GAAGA	3 cut(s)	19, 78, 345
MhlI	GDGCHC	2 cut(s)	39, 202
MluCI	AATT	2 cut(s)	258, 412
MslI	CAYNNNNRTG	1 cut(s)	207
MspI	CCGG	2 cut(s)	39, 63
MspR9I	CCNGG	3 cut(s)	39, 63, 103
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	2 cut(s)	52, 378
MwoI	GCNNNNNNNGC	3 cut(s)	118, 121, 323
NciI	CCSGG	2 cut(s)	39, 63
NdeII	GATC	2 cut(s)	298, 460
NlaIII	CATG	2 cut(s)	270, 422
NlaIV	GGNNCC	3 cut(s)	37, 43, 108
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	114, 123, 174
Psp124BI	GAGCTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	3 cut(s)	37, 43, 108
PspOMI	GGGCCC	1 cut(s)	35
PspPI	GGNCC	5 cut(s)	35, 36, 41, 56, 107
RseI	CAYNNNNRTG	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	202
SatI	GCNGC	3 cut(s)	113, 122, 173
Sau3AI	GATC	2 cut(s)	298, 460
Sau96I	GGNCC	5 cut(s)	35, 36, 41, 56, 107
ScrFI	CCNGG	3 cut(s)	39, 63, 103
SduI	GDGCHC	2 cut(s)	39, 202
SetI	ASST	8 cut(s)	85, 202, 216, 255, 294, 402, 470, 495
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	503
SinI	GGWCC	2 cut(s)	41, 107
SmiMI	CAYNNNNRTG	1 cut(s)	207
Sse9I	AATT	2 cut(s)	258, 412
SsiI	CCGC	9 cut(s)	33, 77, 92, 110, 113, 119, 122, 133, 378
SspMI	CTAG	2 cut(s)	327, 342
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	3 cut(s)	37, 61, 101
TaaI	ACNGT	3 cut(s)	152, 209, 348
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	258, 412
TauI	GCSGC	2 cut(s)	115, 124
TfiI	GAWTC	1 cut(s)	499
TscAI	CASTG	3 cut(s)	214, 231, 459
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	252, 456
TspRI	CASTG	3 cut(s)	214, 231, 459
VpaK11BI	GGWCC	2 cut(s)	41, 107
XapI	RAATTY	2 cut(s)	258, 412
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	327, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.