Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002748.1

Orthogroup ID

OG0005137

Physical Location & Seq

Genomic Coordinates Reverse (-)

32135 .. 34110

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002748.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggagaggagaagcagagacgaaaagatgggcggaggaggaggaggaggacctgctccccgaggtggcctacccggtcgacctctccctccccctcctcctcttcctcagtcccgcggcccacctccccctccgccgcgccgcttcgaacccgtcgaccgtgaaaagacttgccctttgttgcttcgggtcttcactaagattggaggtcatcacaatcaggaggactttgcagtgagaggcaaagaacccaaagatgaggttcagatttatacatggaaagatgccacacttcgcgaactaactgatcttgtcaaggagattgccccagcggctaggagaagaaatgcaaaactgtcatttgcttttgtataccctgacaagggtggtcgttttgtcttgaaacaggcggggataacacatgcttatggaaacatggggagacgtctagatgacagcaagtccttgaatgagctcaagttccagattggagattatttggatgtggcagtcctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0031974 GO:0031981 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

SAP18

Protein Analysis

172

Amino Acids

19.07

Weight (kDa)

9.89

Isoelectric Point (pI)

65.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45640 AT2G45640
fragaria_vesca	FvH4_5g01190 FvH4_7g12660
malus_domestica	MD02G1197700.v1.1 MD04G1070900.v1.1
prunus_persica	Prupe.2G150900_v2.0.a1 Prupe.5G087000_v2.0.a1
pyrus_communis	pycom02g16140 pycom04g06410
rosa_chinensis	RchiOBHm_Chr1g0351651 RchiOBHm_Chr7g0199901
rosa_laevigata	RLG00000003761 RLG00000028392
rosa_multiflora	Rmu_co8389151.1_g000001 Rmu_sc0001144.1_g000006 Rmu_sc0002748.1_g000010
rosa_roxburghii	Rroxscaffold_3G00256390
rosa_rugosa	Rorug01G0219900 Rorug01G0220000 Rorug07G0057000
rosa_samantha	Rh1AG234400 Rh1BG205000 Rh1CG219100 Rh1DG232000 Rh7AG182300 Rh7CG191800 Rh7DG185100
rosa_wichuraiana	Rw1G020410 Rw7G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	448
Acc36I	ACCTGC	1 cut(s)	61
AccI	GTMKAC	3 cut(s)	79, 156, 372
AccII	CGCG	3 cut(s)	117, 139, 297
AciI	CCGC	8 cut(s)	33, 115, 117, 134, 137, 142, 332, 410
AcyI	GRCGYC	1 cut(s)	445
AfiI	CCNNNNNNNGG	3 cut(s)	65, 382, 383
AgsI	TTSAA	2 cut(s)	403, 469
AhdI	GACNNNNNGTC	1 cut(s)	460
AluBI	AGCT	1 cut(s)	475
AluI	AGCT	1 cut(s)	475
Alw21I	GWGCWC	1 cut(s)	477
Alw26I	GTCTC	2 cut(s)	12, 436
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	2 cut(s)	67, 118
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	50, 119
AsuC2I	CCSGG	1 cut(s)	75
AsuII	TTCGAA	1 cut(s)	147
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	477
BccI	CCATC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	12, 436
BfaI	CTAG	2 cut(s)	336, 449
BfmI	CTRYAG	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	4 cut(s)	118, 137, 142, 333
BlsI	GCNGC	4 cut(s)	119, 138, 143, 334
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	50
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	50, 119
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	184
Bpu14I	TTCGAA	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	61, 115
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 382, 383
BseDI	CCNNGG	2 cut(s)	61, 115
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	3 cut(s)	65, 382, 383
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	7 cut(s)	22, 51, 54, 57, 60, 87, 90
BseYI	CCCAGC	1 cut(s)	328
Bsh1236I	CGCG	3 cut(s)	117, 139, 297
Bsh1285I	CGRYCG	2 cut(s)	79, 160
BshFI	GGCC	2 cut(s)	69, 120
BsiEI	CGRYCG	2 cut(s)	79, 160
BsiHKAI	GWGCWC	1 cut(s)	477
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	3 cut(s)	65, 382, 383
BsmAI	GTCTC	2 cut(s)	12, 436
BsmBI	CGTCTC	2 cut(s)	12, 436
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	69, 120
BsoBI	CYCGRG	1 cut(s)	60
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	307
Bsp68I	TCGCGA	1 cut(s)	297
BspACI	CCGC	8 cut(s)	33, 115, 117, 134, 137, 142, 332, 410
BspANI	GGCC	2 cut(s)	69, 120
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	3 cut(s)	117, 139, 297
BspMI	ACCTGC	1 cut(s)	61
BspT104I	TTCGAA	1 cut(s)	147
BssECI	CCNNGG	2 cut(s)	61, 115
BssMI	GATC	1 cut(s)	307
BssNAI	GTATAC	1 cut(s)	373
BssNI	GRCGYC	1 cut(s)	445
Bst1107I	GTATAC	1 cut(s)	373
Bst4CI	ACNGT	2 cut(s)	161, 357
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	445
BstBI	TTCGAA	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	108, 198
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	3 cut(s)	117, 139, 297
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	2 cut(s)	12, 436
BstMBI	GATC	1 cut(s)	307
BstMCI	CGRYCG	2 cut(s)	79, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	515
BstUI	CGCG	3 cut(s)	117, 139, 297
BstV2I	GAAGAC	1 cut(s)	184
BstZ17I	GTATAC	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	69, 120
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	508
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
BtuMI	TCGCGA	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	61
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	50, 119
Cfr42I	CCGCGG	1 cut(s)	118
CviAII	CATG	3 cut(s)	276, 422, 436
CviJI	RGCY	4 cut(s)	69, 120, 335, 475
CviKI_1	RGCY	4 cut(s)	69, 120, 335, 475
DdeI	CTNAG	2 cut(s)	108, 198
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
DriI	GACNNNNNGTC	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	108
Eam1105I	GACNNNNNGTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	108
EciI	GGCGGA	2 cut(s)	48, 123
Ecl136II	GAGCTC	1 cut(s)	475
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	475
Eco88I	CYCGRG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	477
Esp3I	CGTCTC	2 cut(s)	12, 436
FaeI	CATG	3 cut(s)	279, 425, 439
FaiI	YATR	7 cut(s)	273, 277, 373, 423, 429, 437, 517
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	3 cut(s)	275, 421, 435
FauI	CCCGC	2 cut(s)	122, 403
FblI	GTMKAC	3 cut(s)	79, 156, 372
Fnu4HI	GCNGC	4 cut(s)	118, 137, 142, 333
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	4 cut(s)	118, 137, 142, 333
FspBI	CTAG	2 cut(s)	336, 449
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	4 cut(s)	118, 137, 142, 333
GsaI	CCCAGC	1 cut(s)	332
HaeIII	GGCC	2 cut(s)	69, 120
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	445
Hin1II	CATG	3 cut(s)	279, 425, 439
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	2 cut(s)	80, 157
HindII	GTYRAC	2 cut(s)	80, 157
HpaII	CCGG	1 cut(s)	75
Hpy166II	GTNNAC	3 cut(s)	80, 157, 373
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	5 cut(s)	221, 296, 400, 449, 484
Hpy8I	GTNNAC	3 cut(s)	80, 157, 373
Hpy99I	CGWCG	1 cut(s)	158
HpyCH4III	ACNGT	2 cut(s)	161, 357
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	2 cut(s)	233, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	2 cut(s)	108, 198
HpySE526I	ACGT	1 cut(s)	445
Hsp92I	GRCGYC	1 cut(s)	445
Hsp92II	CATG	3 cut(s)	279, 425, 439
HspAI	GCGC	1 cut(s)	139
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	7 cut(s)	66, 88, 206, 342, 390, 392, 497
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	336, 449
MaeII	ACGT	1 cut(s)	445
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	3 cut(s)	95, 184, 354
MhlI	GDGCHC	1 cut(s)	477
MslI	CAYNNNNRTG	1 cut(s)	426
MspA1I	CMGCKG	2 cut(s)	117, 332
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	75
MvnI	CGCG	3 cut(s)	117, 139, 297
MwoI	GCNNNNNNNGC	1 cut(s)	332
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	3 cut(s)	279, 425, 439
NruI	TCGCGA	1 cut(s)	297
NspI	RCATGY	1 cut(s)	425
NspV	TTCGAA	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PkrI	GCNGC	4 cut(s)	119, 138, 143, 334
PpuMI	RGGWCCY	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	50, 119
PspPPI	RGGWCCY	1 cut(s)	50
RruI	TCGCGA	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	477
SacII	CCGCGG	1 cut(s)	118
SalI	GTCGAC	2 cut(s)	78, 155
SatI	GCNGC	4 cut(s)	118, 137, 142, 333
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	2 cut(s)	50, 119
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	8 cut(s)	55, 67, 85, 127, 211, 264, 448, 477
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	515
Sfr303I	CCGCGG	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	147
SgrBI	CCGCGG	1 cut(s)	118
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SsiI	CCGC	8 cut(s)	33, 115, 117, 134, 137, 142, 332, 410
SspMI	CTAG	2 cut(s)	336, 449
SstI	GAGCTC	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	161, 357
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	3 cut(s)	79, 147, 156
TauI	GCSGC	4 cut(s)	120, 139, 144, 335
TscAI	CASTG	1 cut(s)	240
TspRI	CASTG	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	50
XbaI	TCTAGA	1 cut(s)	448
XceI	RCATGY	1 cut(s)	425
XmiI	GTMKAC	3 cut(s)	79, 156, 372
XspI	CTAG	2 cut(s)	336, 449
ZraI	GACGTC	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.