Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005137

Physical Location & Seq

Genomic Coordinates Forward (+)

6472522 .. 6474756

Gene Structure 2235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06410.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACCCATTTGGGTTATAGAGTGGTTGCAGACTTCTTGGTCTCGTACACGACAAATTTCTGTTACATCGACCCCAGAACCCGAAATCGTTCTCAGGCAAGGACTTCGACAATGGAGAAGAGAAGCAGAGACGAAAAGATGGGCGGGCCGGGTCCCCAGACGCGAGGCCCACCCGGAAGACAACTTCCGCCACCACCTCCTCCGCCTCACTCCAGGGGTCCGCCGCCGCCGCCGCCTCGCCCCCGCTCCGAACCCATCGACCGTGAAAAGACTTGCCCTCTGCTGCTCCGGGTTTTCACTAAGATTGGAGCTCATCACAGTGAGGTGGACTTTGCAGTGAGAGGCAATGAACCCAAAGATGAGGTTCAAATTTATACATGGAAAGATGCAACACTTCGTGAGCTAACTGATCTCGTCAAAGAGATTGCTCCAGAGGCTAGGAGAAGAAATGCTAGGCTGTCTTTTGCTTTTGTATACCCTGACAAGCGCGGTCGTTTTGTGGTGAAACAGGTTGGGATGACAAATTCTCATGGAAACGGGAGACAAGTGGATGAAAGCAAGGCACTGAATGATCTTAGCTTTCAGATTGGAGATTATTTGGACGTGGCGATTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0031974 GO:0031981 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

SAP18

Protein Analysis

206

Amino Acids

23.21

Weight (kDa)

9.79

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45640 AT2G45640
fragaria_vesca	FvH4_5g01190 FvH4_7g12660
malus_domestica	MD02G1197700.v1.1 MD04G1070900.v1.1
prunus_persica	Prupe.2G150900_v2.0.a1 Prupe.5G087000_v2.0.a1
pyrus_communis	pycom02g16140 pycom04g06410
rosa_chinensis	RchiOBHm_Chr1g0351651 RchiOBHm_Chr7g0199901
rosa_laevigata	RLG00000003761 RLG00000028392
rosa_multiflora	Rmu_co8389151.1_g000001 Rmu_sc0001144.1_g000006 Rmu_sc0002748.1_g000010
rosa_roxburghii	Rroxscaffold_3G00256390
rosa_rugosa	Rorug01G0219900 Rorug01G0220000 Rorug07G0057000
rosa_samantha	Rh1AG234400 Rh1BG205000 Rh1CG219100 Rh1DG232000 Rh7AG182300 Rh7CG191800 Rh7DG185100
rosa_wichuraiana	Rw1G020410 Rw7G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	2 cut(s)	163, 489
AcsI	RAATTY	3 cut(s)	55, 369, 523
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	368
AjiI	CACGTC	1 cut(s)	604
AjnI	CCWGG	1 cut(s)	212
AluBI	AGCT	3 cut(s)	311, 403, 579
AluI	AGCT	3 cut(s)	311, 403, 579
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	3 cut(s)	46, 123, 535
AoxI	GGCC	2 cut(s)	146, 166
ApeKI	GCWGC	1 cut(s)	283
ApoI	RAATTY	3 cut(s)	55, 369, 523
Asp700I	GAANNNNTTC	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	4 cut(s)	146, 152, 167, 218
AsuC2I	CCSGG	3 cut(s)	150, 174, 290
AsuHPI	GGTGA	1 cut(s)	514
AvaII	GGWCC	2 cut(s)	152, 218
BanII	GRGCYC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	2 cut(s)	133, 263
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BciT130I	CCWGG	1 cut(s)	214
BcnI	CCSGG	3 cut(s)	150, 174, 290
BcoDI	GTCTC	3 cut(s)	46, 123, 535
BfaI	CTAG	2 cut(s)	438, 453
BfmI	CTRYAG	1 cut(s)	614
BisI	GCNGC	5 cut(s)	224, 227, 230, 233, 284
BlsI	GCNGC	5 cut(s)	225, 228, 231, 234, 285
Bme1390I	CCNGG	4 cut(s)	150, 174, 214, 290
Bme18I	GGWCC	2 cut(s)	152, 218
BmgBI	CACGTC	1 cut(s)	604
BmgT120I	GGNCC	4 cut(s)	146, 152, 167, 218
BmiI	GGNNCC	3 cut(s)	153, 154, 219
BmrFI	CCNGG	4 cut(s)	150, 174, 214, 290
BmsI	GCATC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	184
BpmI	CTGGAG	2 cut(s)	196, 414
BpuMI	CCSGG	3 cut(s)	150, 174, 290
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	522, 556
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	270
Bsh1236I	CGCG	2 cut(s)	163, 489
Bsh1285I	CGRYCG	2 cut(s)	262, 493
BshFI	GGCC	2 cut(s)	148, 168
BsiEI	CGRYCG	2 cut(s)	262, 493
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	3 cut(s)	149, 174, 289
BslFI	GGGAC	1 cut(s)	138
BsmAI	GTCTC	3 cut(s)	46, 123, 535
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	148, 168
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	409, 571
BspANI	GGCC	2 cut(s)	148, 168
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	2 cut(s)	163, 489
BspLI	GGNNCC	3 cut(s)	153, 154, 219
BspTNI	GGTCTC	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	409, 571
BssNAI	GTATAC	1 cut(s)	475
Bst1107I	GTATAC	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	2 cut(s)	263, 320
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	3 cut(s)	93, 300, 575
BstF5I	GGATG	2 cut(s)	522, 556
BstFNI	CGCG	2 cut(s)	163, 489
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	2 cut(s)	412, 574
BstMAI	GTCTC	3 cut(s)	46, 123, 535
BstMBI	GATC	2 cut(s)	409, 571
BstMCI	CGRYCG	2 cut(s)	262, 493
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 232, 434
BstNI	CCWGG	1 cut(s)	214
BstSCI	CCNGG	4 cut(s)	148, 172, 212, 288
BstSFI	CTRYAG	1 cut(s)	614
BstUI	CGCG	2 cut(s)	163, 489
BstV1I	GCAGC	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	184
BstZ17I	GTATAC	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	148, 168
BtrI	CACGTC	1 cut(s)	604
BtsCI	GGATG	2 cut(s)	522, 556
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	3 cut(s)	325, 342, 563
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	4 cut(s)	146, 152, 167, 218
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	378, 530
CviJI	RGCY	7 cut(s)	148, 168, 311, 403, 437, 457, 579
CviKI_1	RGCY	7 cut(s)	148, 168, 311, 403, 437, 457, 579
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	3 cut(s)	93, 300, 575
DpnI	GATC	2 cut(s)	411, 573
DpnII	GATC	2 cut(s)	409, 571
DraIII	CACNNNGTG	1 cut(s)	398
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EciI	GGCGGA	3 cut(s)	177, 192, 210
Ecl136II	GAGCTC	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	152, 218
Eco53kI	GAGCTC	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	313
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	2 cut(s)	381, 533
FaiI	YATR	6 cut(s)	18, 375, 379, 475, 531, 616
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	2 cut(s)	377, 529
FauI	CCCGC	2 cut(s)	137, 251
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	5 cut(s)	224, 227, 230, 233, 284
FokI	GGATG	2 cut(s)	529, 563
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	5 cut(s)	224, 227, 230, 233, 284
FspBI	CTAG	2 cut(s)	438, 453
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	5 cut(s)	224, 227, 230, 233, 284
GsuI	CTGGAG	2 cut(s)	196, 414
HaeIII	GGCC	2 cut(s)	148, 168
HapII	CCGG	3 cut(s)	149, 174, 289
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	2 cut(s)	381, 533
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HinfI	GANTC	1 cut(s)	610
HpaII	CCGG	3 cut(s)	149, 174, 289
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	3 cut(s)	48, 328, 475
Hpy188I	TCNGA	2 cut(s)	250, 585
Hpy188III	TCNNGA	2 cut(s)	398, 431
Hpy8I	GTNNAC	3 cut(s)	48, 328, 475
HpyCH4III	ACNGT	2 cut(s)	263, 320
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	3 cut(s)	29, 335, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 232, 434
HpyF3I	CTNAG	3 cut(s)	93, 300, 575
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	2 cut(s)	381, 533
HspAI	GCGC	1 cut(s)	487
KflI	GGGWCCC	1 cut(s)	152
Kzo9I	GATC	2 cut(s)	409, 571
LmnI	GCTCC	4 cut(s)	251, 291, 308, 433
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	438, 453
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	2 cut(s)	411, 573
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	2 cut(s)	409, 571
MboII	GAAGA	3 cut(s)	130, 189, 456
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	3 cut(s)	55, 369, 523
MroXI	GAANNNNTTC	1 cut(s)	88
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	3 cut(s)	149, 174, 289
MspR9I	CCNGG	4 cut(s)	150, 174, 214, 290
MvaI	CCWGG	1 cut(s)	214
MvnI	CGCG	2 cut(s)	163, 489
MwoI	GCNNNNNNNGC	3 cut(s)	229, 232, 434
NciI	CCSGG	3 cut(s)	150, 174, 290
NdeII	GATC	2 cut(s)	409, 571
NlaIII	CATG	2 cut(s)	381, 533
NlaIV	GGNNCC	3 cut(s)	153, 154, 219
PdmI	GAANNNNTTC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	5 cut(s)	225, 228, 231, 234, 285
PpuMI	RGGWCCY	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	3 cut(s)	153, 154, 219
PspPI	GGNCC	4 cut(s)	146, 152, 167, 218
PspPPI	RGGWCCY	1 cut(s)	152
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	318
SacI	GAGCTC	1 cut(s)	313
SatI	GCNGC	5 cut(s)	224, 227, 230, 233, 284
Sau3AI	GATC	2 cut(s)	409, 571
Sau96I	GGNCC	4 cut(s)	146, 152, 167, 218
ScrFI	CCNGG	4 cut(s)	150, 174, 214, 290
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	8 cut(s)	199, 313, 327, 366, 405, 513, 581, 606
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	614
SinI	GGWCC	2 cut(s)	152, 218
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	3 cut(s)	55, 369, 523
SspMI	CTAG	2 cut(s)	438, 453
SstI	GAGCTC	1 cut(s)	313
StyD4I	CCNGG	4 cut(s)	148, 172, 212, 288
TaaI	ACNGT	2 cut(s)	263, 320
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	3 cut(s)	69, 107, 258
TasI	AATT	3 cut(s)	55, 369, 523
TauI	GCSGC	4 cut(s)	226, 229, 232, 235
TfiI	GAWTC	1 cut(s)	610
TscAI	CASTG	3 cut(s)	325, 342, 570
TseI	GCWGC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	363, 567
TspRI	CASTG	3 cut(s)	325, 342, 570
VpaK11BI	GGWCC	2 cut(s)	152, 218
XapI	RAATTY	3 cut(s)	55, 369, 523
XmiI	GTMKAC	1 cut(s)	474
XmnI	GAANNNNTTC	1 cut(s)	88
XspI	CTAG	2 cut(s)	438, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.