Rh7AG182300

Histone deacetylase complex subunit SAP18-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005137
Physical Location & Seq
Forward (+)
16211179 .. 16212287
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG182300.1

Sequence Viewer

Length: 327 bp
ATGGGGGAAATTGGAGGTCATCACAATCAGGAGGACTTTGCAGTGAGAGGCAAAGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCCACACTTCGCGAACTAACTGATCTTGTCAAGGAGATTGCCCCAGCGGCTAGGAGAAGAAATGCAAAACTGTCATTTGCTTTTGTATACCCTGACAAGGGTGGTCGTTTTGTCTTGAAACAGGCAGGGATAACACATGCTTATGGAAACATGGGGAGACGTCTAGATGACAGCAAGTCCTTGAATGAGCTCAAGTTCCAGATCGGAGATTATTTGGATGTGGCAGTCCTATAG

Protein Analysis

108

Amino Acids

12.21

Weight (kDa)

7.99

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP18 PF06487 5 - 107 3.7e-30 Sin3 associated polypeptide p18 (SAP18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 256
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 190, 191
AgsI TTSAA 2 cut(s) 211, 277
AhdI GACNNNNNGTC 1 cut(s) 268
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 2 cut(s) 144, 257
BfmI CTRYAG 1 cut(s) 323
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmeRI GACNNNNNGTC 1 cut(s) 268
BmsI GCATC 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 191
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 2 cut(s) 190, 191
BseYI CCCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 190, 191
BsmAI GTCTC 1 cut(s) 244
BsmBI CGTCTC 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 115, 294
Bsp68I TCGCGA 1 cut(s) 105
BspACI CCGC 1 cut(s) 140
BspFNI CGCG 1 cut(s) 105
BssMI GATC 2 cut(s) 115, 294
BssNAI GTATAC 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 253
Bst1107I GTATAC 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 253
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 1 cut(s) 105
BstKTI GATC 2 cut(s) 118, 297
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 115, 294
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 323
BstUI CGCG 1 cut(s) 105
BstZ17I GTATAC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
BtuMI TCGCGA 1 cut(s) 105
CviAII CATG 3 cut(s) 84, 230, 244
CviJI RGCY 2 cut(s) 143, 283
CviKI_1 RGCY 2 cut(s) 143, 283
DpnI GATC 2 cut(s) 117, 296
DpnII GATC 2 cut(s) 115, 294
DriI GACNNNNNGTC 1 cut(s) 268
Eam1105I GACNNNNNGTC 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 3 cut(s) 87, 233, 247
FaiI YATR 7 cut(s) 81, 85, 181, 231, 237, 245, 325
FatI CATG 3 cut(s) 83, 229, 243
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 144, 257
GluI GCNGC 1 cut(s) 141
GsaI CCCAGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 253
Hin1II CATG 3 cut(s) 87, 233, 247
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 75, 299
Hpy188III TCNNGA 5 cut(s) 29, 104, 208, 257, 292
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 41, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 253
Hsp92I GRCGYC 1 cut(s) 253
Hsp92II CATG 3 cut(s) 87, 233, 247
Kzo9I GATC 2 cut(s) 115, 294
LpnPI CCDG 6 cut(s) 14, 150, 198, 200, 204, 305
LweI GCATC 1 cut(s) 82
MaeI CTAG 2 cut(s) 144, 257
MaeII ACGT 1 cut(s) 253
MalI GATC 2 cut(s) 117, 296
MboI GATC 2 cut(s) 115, 294
MboII GAAGA 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 1 cut(s) 9
MnlI CCTC 4 cut(s) 8, 25, 41, 61
MslI CAYNNNNRTG 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 140
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 2 cut(s) 115, 294
NlaIII CATG 3 cut(s) 87, 233, 247
NruI TCGCGA 1 cut(s) 105
NspI RCATGY 1 cut(s) 233
PkrI GCNGC 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 136
RruI TCGCGA 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 234
SacI GAGCTC 1 cut(s) 285
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 2 cut(s) 115, 294
SduI GDGCHC 1 cut(s) 285
SetI ASST 4 cut(s) 19, 72, 256, 285
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 1 cut(s) 9
SsiI CCGC 1 cut(s) 140
SspMI CTAG 2 cut(s) 144, 257
SstI GAGCTC 1 cut(s) 285
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 1 cut(s) 256
TasI AATT 1 cut(s) 9
TauI GCSGC 1 cut(s) 143
TscAI CASTG 1 cut(s) 48
TspRI CASTG 1 cut(s) 48
XbaI TCTAGA 1 cut(s) 256
XceI RCATGY 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 2 cut(s) 144, 257
ZraI GACGTC 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.