FvH4_7g12660

negative regulation of mRNA splicing, via spliceosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005137
Physical Location & Seq
Reverse (-)
11469879 .. 11474522
4644 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12660.t1

Sequence Viewer

Length: 423 bp
ATGGCCGGAGCAGCACAACCACCAAAGAGAGGATTACAGCCGCCTCATCGCCCTCGATTTGCCCCTGTCGATCGCGAAAAGACTTGCCCCTTATTGCTTCGCGTTTTCACCAAGGCTGGAAGCCATCATGTCAGTGACGATTTTGCAGTGAGAGGCAAGGAGCCGAAGGATGAGGTTCAAATCTATACTTGGAAGGATGCTTCACTCCGCGAGTTAACTGATCTGGTCAAGGAGGTTGCCCCCGCAGCAAGACGGAAGAATGCAAAACTTTCCTTTGCTTTTGCATATCCAGATAAACGTGGCCGTTTTATAGTTAGAGAGGTGGGGCAAACCTTTGCTTTTGGAAACGGAAGACTCGATGACAAGATTTTGGCTGAGCTTGGCTTTGAGATTGGAGATTACTTGGATGTGGCAATTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0000785 GO:0000790 GO:0001101 GO:0003674 GO:0003712 GO:0003714 GO:0003824 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006464 GO:0006476 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0008380 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016569 GO:0016570 GO:0016575 GO:0016580 GO:0016604 GO:0016607 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033119 GO:0033558 GO:0033993 GO:0034641 GO:0035601 GO:0036211 GO:0040029 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043484 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045292 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061574 GO:0065007 GO:0070013 GO:0070822 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097305 GO:0098732 GO:0140096 GO:0140110 GO:1901360 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903311 GO:1903312 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
SAP18

Protein Analysis

141

Amino Acids

15.72

Weight (kDa)

9.47

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP18 PF06487 23 - 139 1.9e-40 Sin3 associated polypeptide p18 (SAP18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 75, 102, 210
AciI CCGC 3 cut(s) 41, 208, 243
AcoI YGGCCR 2 cut(s) 3, 301
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 179
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
AoxI GGCC 2 cut(s) 3, 301
ApeKI GCWGC 2 cut(s) 11, 245
AsuHPI GGTGA 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 358
BbvI GCAGC 2 cut(s) 23, 257
BccI CCATC 1 cut(s) 132
BceAI ACGGC 1 cut(s) 288
BisI GCNGC 3 cut(s) 12, 41, 246
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 3 cut(s) 13, 42, 247
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 358
Bpu1102I GCTNAGC 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 3 cut(s) 175, 202, 412
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 366
BseXI GCAGC 2 cut(s) 23, 257
Bsh1236I CGCG 3 cut(s) 75, 102, 210
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 5, 303
BsiEI CGRYCG 1 cut(s) 73
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 29
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 2 cut(s) 5, 303
Bsp143I GATC 2 cut(s) 70, 220
Bsp1720I GCTNAGC 1 cut(s) 375
Bsp68I TCGCGA 1 cut(s) 75
BspACI CCGC 3 cut(s) 41, 208, 243
BspANI GGCC 2 cut(s) 5, 303
BspCNI CTCAG 1 cut(s) 367
BspFNI CGCG 3 cut(s) 75, 102, 210
BspLI GGNNCC 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 70, 220
BssT1I CCWWGG 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 3 cut(s) 175, 202, 412
BstFNI CGCG 3 cut(s) 75, 102, 210
BstKTI GATC 2 cut(s) 73, 223
BstMBI GATC 2 cut(s) 70, 220
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 11, 245
BstUI CGCG 3 cut(s) 75, 102, 210
BstV1I GCAGC 2 cut(s) 23, 257
BstV2I GAAGAC 1 cut(s) 358
BsuRI GGCC 2 cut(s) 5, 303
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 3 cut(s) 175, 202, 412
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 139, 153
BtuMI TCGCGA 1 cut(s) 75
CviAII CATG 1 cut(s) 128
CviJI RGCY 9 cut(s) 5, 40, 116, 123, 163, 303, 374, 379, 384
CviKI_1 RGCY 9 cut(s) 5, 40, 116, 123, 163, 303, 374, 379, 384
DdeI CTNAG 1 cut(s) 375
DpnI GATC 2 cut(s) 72, 222
DpnII GATC 2 cut(s) 70, 220
EaeI YGGCCR 2 cut(s) 3, 301
Eco130I CCWWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 131
FaiI YATR 5 cut(s) 129, 186, 286, 311, 419
FatI CATG 1 cut(s) 127
FauI CCCGC 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 12, 41, 246
FokI GGATG 3 cut(s) 182, 209, 419
Fsp4HI GCNGC 3 cut(s) 12, 41, 246
GluI GCNGC 3 cut(s) 12, 41, 246
HaeIII GGCC 2 cut(s) 5, 303
HapII CCGG 1 cut(s) 6
Hin1II CATG 1 cut(s) 131
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 1 cut(s) 354
HpaI GTTAAC 1 cut(s) 216
HpaII CCGG 1 cut(s) 6
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 216
Hpy188III TCNNGA 2 cut(s) 74, 290
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 2 cut(s) 160, 187
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 146, 263, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 245
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 1 cut(s) 131
KspAI GTTAAC 1 cut(s) 216
Kzo9I GATC 2 cut(s) 70, 220
LmnI GCTCC 2 cut(s) 8, 160
LpnPI CCDG 5 cut(s) 19, 78, 102, 209, 303
Lsp1109I GCAGC 2 cut(s) 23, 257
LweI GCATC 1 cut(s) 187
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 72, 222
MboI GATC 2 cut(s) 70, 220
MboII GAAGA 2 cut(s) 268, 363
MluCI AATT 1 cut(s) 414
MlyI GAGTC 1 cut(s) 348
MnlI CCTC 7 cut(s) 23, 54, 63, 146, 166, 226, 313
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 265
MvnI CGCG 3 cut(s) 75, 102, 210
MwoI GCNNNNNNNGC 2 cut(s) 11, 245
NdeII GATC 2 cut(s) 70, 220
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 134
NruI TCGCGA 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PctI GAATGC 1 cut(s) 265
PkrI GCNGC 3 cut(s) 13, 42, 247
Ple19I CGATCG 1 cut(s) 73
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 162
PvuI CGATCG 1 cut(s) 73
RruI TCGCGA 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 3 cut(s) 12, 41, 246
Sau3AI GATC 2 cut(s) 70, 220
SchI GAGTC 1 cut(s) 348
SetI ASST 6 cut(s) 177, 237, 301, 324, 335, 381
SfaNI GCATC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 1 cut(s) 414
SsiI CCGC 3 cut(s) 41, 208, 243
StyI CCWWGG 1 cut(s) 111
TaiI ACGT 1 cut(s) 301
TaqI TCGA 3 cut(s) 55, 69, 357
TasI AATT 1 cut(s) 414
TauI GCSGC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 2 cut(s) 139, 153
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 2 cut(s) 11, 245
Tsp45I GTSAC 1 cut(s) 134
TspGWI ACGGA 2 cut(s) 268, 363
TspRI CASTG 2 cut(s) 139, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.