Rh7CG191800

Histone deacetylase complex subunit SAP18-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005137
Physical Location & Seq
Forward (+)
16925719 .. 16927956
2238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG191800.1

Sequence Viewer

Length: 519 bp
ATGGAGAGGAGAAGCAGAGACGAAAAGATGGGCGGAGGAGGAGGAGGAGGACCTGGTCCCCGAGGTGGCCTACCCGGTCGACCTCTCCCTCCCCCTCCTCCTCTTCCTCAGTCCCGCGGCCTACCTCCCCCGCCGCCCCGCCGCTTCGAACCCGTCGACCGTGAAAAGACTTGCCCTTTGTTGCTTCGGGTCTTCACTAAGATTGGAGGTCATCACAATCAGGAGGACTTTGCAGTGAGAGGCAAAGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCCACACTTCGCGAACTAACTGATCTTGTCAAGGAGATTGCCCCAGCGGCTAGGAGAAGAAATGCAAAACTGTCATTTGCTTTTGTATACCCTGACAAGGGTGGTCGTTTTGTCTTGAAACAGGCGGGGATAACACATGCTTATGGAAACATGGGGAGACGTCTAGATGACAGCAAGTCCTTGAATGAACTCAAGTTCCAGATTGGAGATTATTTGGATGTGGCAGTCCTATAG

Protein Analysis

172

Amino Acids

19.07

Weight (kDa)

9.89

Isoelectric Point (pI)

63.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAP18 PF06487 52 - 171 1.4e-40 Sin3 associated polypeptide p18 (SAP18)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 448
AccI GTMKAC 3 cut(s) 79, 156, 372
AccII CGCG 2 cut(s) 117, 297
AciI CCGC 9 cut(s) 33, 115, 117, 131, 134, 139, 142, 332, 410
AcyI GRCGYC 1 cut(s) 445
AfiI CCNNNNNNNGG 3 cut(s) 65, 382, 383
AgsI TTSAA 2 cut(s) 403, 469
AhdI GACNNNNNGTC 1 cut(s) 460
AjnI CCWGG 1 cut(s) 52
AloI GAACNNNNNNTCC 2 cut(s) 465, 497
Alw26I GTCTC 2 cut(s) 12, 436
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 67, 118
ArsI GACNNNNNNTTYG 2 cut(s) 160, 192
AspS9I GGNCC 2 cut(s) 50, 56
AsuC2I CCSGG 1 cut(s) 75
AsuII TTCGAA 1 cut(s) 147
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 2 cut(s) 50, 56
BbsI GAAGAC 1 cut(s) 184
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 54
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 2 cut(s) 12, 436
BfaI CTAG 2 cut(s) 336, 449
BfmI CTRYAG 1 cut(s) 515
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 4 cut(s) 118, 134, 142, 333
BlsI GCNGC 4 cut(s) 119, 135, 143, 334
Bme1390I CCNGG 2 cut(s) 54, 75
Bme18I GGWCC 2 cut(s) 50, 56
BmeRI GACNNNNNGTC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 50, 56
BmiI GGNNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 54, 75
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 184
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 75
BsaHI GRCGYC 1 cut(s) 445
BsaJI CCNNGG 2 cut(s) 61, 115
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 382, 383
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 61, 115
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 3 cut(s) 65, 382, 383
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 7 cut(s) 22, 51, 54, 57, 60, 87, 90
BseYI CCCAGC 1 cut(s) 328
Bsh1236I CGCG 2 cut(s) 117, 297
Bsh1285I CGRYCG 2 cut(s) 79, 160
BshFI GGCC 2 cut(s) 69, 120
BsiEI CGRYCG 2 cut(s) 79, 160
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 2 cut(s) 42, 97
BslI CCNNNNNNNGG 3 cut(s) 65, 382, 383
BsmAI GTCTC 2 cut(s) 12, 436
BsmBI CGTCTC 2 cut(s) 12, 436
BsmFI GGGAC 2 cut(s) 42, 97
BsnI GGCC 2 cut(s) 69, 120
BsoBI CYCGRG 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 147
Bsp143I GATC 1 cut(s) 307
Bsp68I TCGCGA 1 cut(s) 297
BspACI CCGC 9 cut(s) 33, 115, 117, 131, 134, 139, 142, 332, 410
BspANI GGCC 2 cut(s) 69, 120
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 2 cut(s) 117, 297
BspLI GGNNCC 1 cut(s) 58
BspT104I TTCGAA 1 cut(s) 147
BssECI CCNNGG 2 cut(s) 61, 115
BssMI GATC 1 cut(s) 307
BssNAI GTATAC 1 cut(s) 373
BssNI GRCGYC 1 cut(s) 445
Bst1107I GTATAC 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 161, 357
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 445
BstBI TTCGAA 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 108, 198
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 508
BstFNI CGCG 2 cut(s) 117, 297
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 2 cut(s) 12, 436
BstMBI GATC 1 cut(s) 307
BstMCI CGRYCG 2 cut(s) 79, 160
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 425
BstSCI CCNGG 2 cut(s) 52, 73
BstSFI CTRYAG 1 cut(s) 515
BstUI CGCG 2 cut(s) 117, 297
BstV2I GAAGAC 1 cut(s) 184
BstZ17I GTATAC 1 cut(s) 373
BsuRI GGCC 2 cut(s) 69, 120
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 1 cut(s) 508
BtsI GCAGTG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 240
BtuMI TCGCGA 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 50, 56
Cfr42I CCGCGG 1 cut(s) 118
CsiI ACCWGGT 1 cut(s) 52
CviAII CATG 3 cut(s) 276, 422, 436
CviJI RGCY 3 cut(s) 69, 120, 335
CviKI_1 RGCY 3 cut(s) 69, 120, 335
DdeI CTNAG 2 cut(s) 108, 198
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DriI GACNNNNNGTC 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 108
Eam1105I GACNNNNNGTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 50, 56
Eco88I CYCGRG 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 52
Esp3I CGTCTC 2 cut(s) 12, 436
FaeI CATG 3 cut(s) 279, 425, 439
FaiI YATR 7 cut(s) 273, 277, 373, 423, 429, 437, 517
FaqI GGGAC 2 cut(s) 42, 97
FatI CATG 3 cut(s) 275, 421, 435
FauI CCCGC 4 cut(s) 122, 138, 146, 403
FblI GTMKAC 3 cut(s) 79, 156, 372
Fnu4HI GCNGC 4 cut(s) 118, 134, 142, 333
FokI GGATG 1 cut(s) 515
Fsp4HI GCNGC 4 cut(s) 118, 134, 142, 333
FspBI CTAG 2 cut(s) 336, 449
GluI GCNGC 4 cut(s) 118, 134, 142, 333
GsaI CCCAGC 1 cut(s) 332
HaeIII GGCC 2 cut(s) 69, 120
HapII CCGG 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 445
Hin1II CATG 3 cut(s) 279, 425, 439
HincII GTYRAC 2 cut(s) 80, 157
HindII GTYRAC 2 cut(s) 80, 157
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 3 cut(s) 80, 157, 373
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 5 cut(s) 221, 296, 400, 449, 484
Hpy8I GTNNAC 3 cut(s) 80, 157, 373
Hpy99I CGWCG 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 161, 357
HpyCH4IV ACGT 1 cut(s) 445
HpyCH4V TGCA 2 cut(s) 233, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 2 cut(s) 108, 198
HpySE526I ACGT 1 cut(s) 445
Hsp92I GRCGYC 1 cut(s) 445
Hsp92II CATG 3 cut(s) 279, 425, 439
KspI CCGCGG 1 cut(s) 118
Kzo9I GATC 1 cut(s) 307
LpnPI CCDG 8 cut(s) 39, 66, 88, 206, 342, 390, 392, 497
LweI GCATC 1 cut(s) 274
MabI ACCWGGT 1 cut(s) 52
MaeI CTAG 2 cut(s) 336, 449
MaeII ACGT 1 cut(s) 445
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 95, 184, 354
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 2 cut(s) 117, 332
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 54, 75
MvaI CCWGG 1 cut(s) 54
MvnI CGCG 2 cut(s) 117, 297
MwoI GCNNNNNNNGC 1 cut(s) 332
NciI CCSGG 1 cut(s) 75
NdeII GATC 1 cut(s) 307
NlaIII CATG 3 cut(s) 279, 425, 439
NlaIV GGNNCC 1 cut(s) 58
NruI TCGCGA 1 cut(s) 297
NspI RCATGY 1 cut(s) 425
NspV TTCGAA 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 54
PkrI GCNGC 4 cut(s) 119, 135, 143, 334
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 52
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 2 cut(s) 50, 56
PspPPI RGGWCCY 1 cut(s) 50
PsyI GACNNNGTC 1 cut(s) 54
RruI TCGCGA 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 426
SacII CCGCGG 1 cut(s) 118
SalI GTCGAC 2 cut(s) 78, 155
SatI GCNGC 4 cut(s) 118, 134, 142, 333
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 2 cut(s) 50, 56
ScrFI CCNGG 2 cut(s) 54, 75
SetI ASST 7 cut(s) 55, 67, 85, 127, 211, 264, 448
SexAI ACCWGGT 1 cut(s) 52
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 1 cut(s) 515
Sfr303I CCGCGG 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 147
SgrBI CCGCGG 1 cut(s) 118
SinI GGWCC 2 cut(s) 50, 56
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SsiI CCGC 9 cut(s) 33, 115, 117, 131, 134, 139, 142, 332, 410
SspMI CTAG 2 cut(s) 336, 449
StyD4I CCNGG 2 cut(s) 52, 73
TaaI ACNGT 2 cut(s) 161, 357
TaiI ACGT 1 cut(s) 448
TaqI TCGA 3 cut(s) 79, 147, 156
TauI GCSGC 4 cut(s) 120, 136, 144, 335
TscAI CASTG 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 486
TspRI CASTG 1 cut(s) 240
Tth111I GACNNNGTC 1 cut(s) 54
VpaK11BI GGWCC 2 cut(s) 50, 56
XbaI TCTAGA 1 cut(s) 448
XceI RCATGY 1 cut(s) 425
XmiI GTMKAC 3 cut(s) 79, 156, 372
XspI CTAG 2 cut(s) 336, 449
ZraI GACGTC 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.