Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005137

Physical Location & Seq

Genomic Coordinates Reverse (-)

9831382 .. 9833712

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G087000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGAGGAGAAACAGAGACGACAAGATGGGCGGACCGGGTCCCCAGAACCAAGCCCAGACCCGAGGTCCAACCGGCAGACCCCTCCCTCCTCCTCCTCACTCTAGGGGTCCACCGCCCCCGCCCCCTCCCCGCCTCGAGCCCGTCGACCGTGAAAAGACTTGCCCTTTGTTGCTTCGGGTTTTCACTAAGATTGGAAGTCATCATAATAATGAGGATTTTGCAGTCAGAGGCAAGGAACCCAAAGATGAGGTCCAAATTTATACATGGAAAGACGCGACACTTCGCGAGCTAACTGATCTTGTCAAAGAGATTGCTCCAGAGGCTAGGAGAAGAAATGCAAAACTTTCTTTTGCTTTTGTATACCCTGACAGGCGCGGTCATTTTGTTGTGAAAACGGTTGGGATGACACATTCTTATGGAAATGGTAGAAATCCGGATGAGAACAAGGCATTGAATGATTTTAACTTCCAGATTGGGGATTATTTAGATGTGGCGGTCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0031974 GO:0031981 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

SAP18

Protein Analysis

169

Amino Acids

19.04

Weight (kDa)

9.47

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45640 AT2G45640
fragaria_vesca	FvH4_5g01190 FvH4_7g12660
malus_domestica	MD02G1197700.v1.1 MD04G1070900.v1.1
prunus_persica	Prupe.2G150900_v2.0.a1 Prupe.5G087000_v2.0.a1
pyrus_communis	pycom02g16140 pycom04g06410
rosa_chinensis	RchiOBHm_Chr1g0351651 RchiOBHm_Chr7g0199901
rosa_laevigata	RLG00000003761 RLG00000028392
rosa_multiflora	Rmu_co8389151.1_g000001 Rmu_sc0001144.1_g000006 Rmu_sc0002748.1_g000010
rosa_roxburghii	Rroxscaffold_3G00256390
rosa_rugosa	Rorug01G0219900 Rorug01G0220000 Rorug07G0057000
rosa_samantha	Rh1AG234400 Rh1BG205000 Rh1CG219100 Rh1DG232000 Rh7AG182300 Rh7CG191800 Rh7DG185100
rosa_wichuraiana	Rw1G020410 Rw7G015990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	147, 363
AccII	CGCG	3 cut(s)	278, 288, 378
AccIII	TCCGGA	1 cut(s)	436
AciI	CCGC	6 cut(s)	33, 116, 122, 133, 378, 497
AcsI	RAATTY	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	1 cut(s)	457
AhdI	GACNNNNNGTC	1 cut(s)	66
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	12
Ama87I	CYCGRG	2 cut(s)	63, 137
Aor13HI	TCCGGA	1 cut(s)	436
ApoI	RAATTY	1 cut(s)	258
ArsI	GACNNNNNNTTYG	4 cut(s)	151, 183, 237, 269
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	6 cut(s)	35, 41, 68, 110, 253, 499
AsuC2I	CCSGG	1 cut(s)	39
AvaI	CYCGRG	2 cut(s)	63, 137
AvaII	GGWCC	6 cut(s)	35, 41, 68, 110, 253, 499
BanII	GRGCYC	1 cut(s)	144
BccI	CCATC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	105, 327
BfmI	CTRYAG	1 cut(s)	503
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	6 cut(s)	35, 41, 68, 110, 253, 499
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmeT110I	CYCGRG	2 cut(s)	63, 137
BmgT120I	GGNCC	6 cut(s)	35, 41, 68, 110, 253, 499
BmiI	GGNNCC	4 cut(s)	42, 43, 111, 240
BmrFI	CCNGG	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	64
BsaWI	WCCGGW	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse118I	RCCGGY	1 cut(s)	74
BseAI	TCCGGA	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	2 cut(s)	411, 445
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseRI	GAGGAG	4 cut(s)	22, 81, 84, 87
Bsh1236I	CGCG	3 cut(s)	278, 288, 378
Bsh1285I	CGRYCG	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	151
BsiHKCI	CYCGRG	2 cut(s)	63, 137
BsiSI	CCGG	3 cut(s)	38, 75, 437
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	27
BsoBI	CYCGRG	2 cut(s)	63, 137
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	298
Bsp68I	TCGCGA	1 cut(s)	288
BspACI	CCGC	6 cut(s)	33, 116, 122, 133, 378, 497
BspEI	TCCGGA	1 cut(s)	436
BspFNI	CGCG	3 cut(s)	278, 288, 378
BspLI	GGNNCC	4 cut(s)	42, 43, 111, 240
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	298
BssNAI	GTATAC	1 cut(s)	364
Bst1107I	GTATAC	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	152, 400
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	411, 445
BstFNI	CGCG	3 cut(s)	278, 288, 378
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	298
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	503
BstUI	CGCG	3 cut(s)	278, 288, 378
BstZ17I	GTATAC	1 cut(s)	364
BtsCI	GGATG	2 cut(s)	411, 445
BtuMI	TCGCGA	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	6 cut(s)	35, 41, 68, 110, 253, 499
CpoI	CGGWCCG	1 cut(s)	35
CseI	GACGC	1 cut(s)	284
CspI	CGGWCCG	1 cut(s)	35
CviAII	CATG	1 cut(s)	267
CviJI	RGCY	4 cut(s)	56, 142, 292, 326
CviKI_1	RGCY	4 cut(s)	56, 142, 292, 326
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DriI	GACNNNNNGTC	1 cut(s)	66
Eam1105I	GACNNNNNGTC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	6 cut(s)	35, 41, 68, 110, 253, 499
Eco88I	CYCGRG	2 cut(s)	63, 137
EcoO109I	RGGNCCY	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	270
FaiI	YATR	6 cut(s)	207, 264, 268, 364, 420, 505
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	1 cut(s)	266
FauI	CCCGC	2 cut(s)	129, 140
FblI	GTMKAC	2 cut(s)	147, 363
FokI	GGATG	2 cut(s)	418, 452
FriOI	GRGCYC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	105, 327
GlaI	GCGC	1 cut(s)	377
GsuI	CTGGAG	1 cut(s)	303
HapII	CCGG	3 cut(s)	38, 75, 437
HgaI	GACGC	1 cut(s)	284
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	270
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HpaII	CCGG	3 cut(s)	38, 75, 437
Hpy166II	GTNNAC	3 cut(s)	113, 148, 364
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	4 cut(s)	287, 320, 437, 472
Hpy8I	GTNNAC	3 cut(s)	113, 148, 364
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	2 cut(s)	152, 400
HpyCH4V	TGCA	2 cut(s)	224, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	270
HspAI	GCGC	1 cut(s)	376
KflI	GGGWCCC	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	9 cut(s)	51, 59, 71, 88, 333, 358, 381, 450, 485
MaeI	CTAG	2 cut(s)	105, 327
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	258
MmeI	TCCRAC	1 cut(s)	95
MroI	TCCGGA	1 cut(s)	436
MseI	TTAA	1 cut(s)	465
MslI	CAYNNNNRTG	2 cut(s)	210, 417
MspI	CCGG	3 cut(s)	38, 75, 437
MspR9I	CCNGG	1 cut(s)	39
MvnI	CGCG	3 cut(s)	278, 288, 378
MwoI	GCNNNNNNNGC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	270
NlaIV	GGNNCC	4 cut(s)	42, 43, 111, 240
NruI	TCGCGA	1 cut(s)	288
PaeR7I	CTCGAG	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PflFI	GACNNNGTC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	41
PspN4I	GGNNCC	4 cut(s)	42, 43, 111, 240
PspPI	GGNCC	6 cut(s)	35, 41, 68, 110, 253, 499
PspPPI	RGGWCCY	1 cut(s)	41
PspXI	VCTCGAGB	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	39
RruI	TCGCGA	1 cut(s)	288
RseI	CAYNNNNRTG	2 cut(s)	210, 417
Rsr2I	CGGWCCG	1 cut(s)	35
RsrII	CGGWCCG	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	465
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	6 cut(s)	35, 41, 68, 110, 253, 499
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	3 cut(s)	70, 255, 294
SfcI	CTRYAG	1 cut(s)	503
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	6 cut(s)	35, 41, 68, 110, 253, 499
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	2 cut(s)	210, 417
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	6 cut(s)	33, 116, 122, 133, 378, 497
SspMI	CTAG	2 cut(s)	105, 327
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	152, 400
TaqI	TCGA	2 cut(s)	138, 147
TasI	AATT	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
Tth111I	GACNNNGTC	1 cut(s)	39
VpaK11BI	GGWCC	6 cut(s)	35, 41, 68, 110, 253, 499
XapI	RAATTY	1 cut(s)	258
XhoI	CTCGAG	1 cut(s)	137
XmiI	GTMKAC	2 cut(s)	147, 363
XspI	CTAG	2 cut(s)	105, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.