Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009265

Physical Location & Seq

Genomic Coordinates Forward (+)

52380926 .. 52384473

Gene Structure 3548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003760

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTAGCAAATTAGCCTTCACCCTAGTAGCTCCCACTCGTAATTCCTATAATCCTTTTATTCAGAGACCCTTTGTTTCAGTTTCGTCTTCCTCTACTAGGGTGCAGTCGTTTCAGTTCAGCGGGCGGCAGCTCTGCGTACGACGTCGTTTGCTGGTGCTTCCGTCGAAGGCTGCGGCTGACCAACAGCAAGGAAATGAGGACGTTGTTGATAGTAAGATCCTGCCATATTGTAGCATAGACAAGAAAGGGAAGAAGTCATTGGGAGAACTTGAACAAGACTTTCTTCAAGCTCTACAATCATTTTATTATGATGGAAAAGCTATTATGTCAAATGAGGAATTTGATAATCTCAAGGAAGAGCTAATGTGGGAAGGCAGCAGTGTTGTCATGCTAAGTTCTGATGAACAAAAGTTTCTGGAAGCTTCAATGGCCTACGTCTCTGGGAAACCAATTTTGAGCGACCAAGAGTATGATGATTTGAAGTTAAGACTAAAGTCGCAAGGGAGTGATATTGTCGTCCTGGGTCCCAGATGCAGTCTCCGTACTAGAAAGGTTTACAGTGACCTGACTGTTGACTATTTGAAGATGCTCCTGCTGAATGTCCCAGCAACCATTGTTGCCTTAGGAGTGTTTTTCTTCTTGGATGATCTGACTGGTTTCGAAATTACATATCTTTTGGAGCTCCCAGAACCGTTCAGCTTCATTTTCACATGGTTTGCTGCCGTGCCAGTCATAGTTTATCTAGCCACACAACTCACCAAACTTATTGTGAAGGATGTCTTGATCTTAAAGGGCCCTTGTCCAAACTGTGGTACAGAGAATCAGTCATTCTTTGGGTCGATACTATCGATTTCGAATGGTGGTTCTACCAACAACCTTAAGTGCTCAAACTGTGGAACTCCGTTGGTATATGATAAGACTACGCGCTTGATTACCTTGCCAGAAGGAAGCAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016730 GO:0019684 GO:0019904 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

35.6

Weight (kDa)

5.48

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11960 AT4G11960 AT4G22890 AT4G22890 AT4G22890 AT4G22890 AT4G22890
fragaria_vesca	FvH4_5g01180 FvH4_5g01180
malus_domestica	MD04G1071000.v1.1
prunus_persica	Prupe.5G086900_v2.0.a1
pyrus_communis	pycom04g06420
rosa_chinensis	RchiOBHm_Chr7g0199911
rosa_laevigata	RLG00000003760
rosa_multiflora	Rmu_sc0002748.1_g000009
rosa_roxburghii	Rroxscaffold_3G00256380
rosa_rugosa	Rorug07G0057000
rosa_samantha	Rh7AG182400 Rh7BG185300 Rh7CG191900 Rh7DG185200
rosa_wichuraiana	Rw7G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	812
AccII	CGCG	1 cut(s)	928
AciI	CCGC	3 cut(s)	123, 127, 176
AclWI	GGATC	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	145
AfaI	GTAC	3 cut(s)	141, 547, 817
AfiI	CCNNNNNNNGG	2 cut(s)	99, 812
AflII	CTTAAG	1 cut(s)	881
AgsI	TTSAA	5 cut(s)	275, 290, 429, 484, 586
AjnI	CCWGG	1 cut(s)	522
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	8 cut(s)	32, 133, 293, 323, 364, 425, 685, 702
AluI	AGCT	8 cut(s)	32, 133, 293, 323, 364, 425, 685, 702
Alw21I	GWGCWC	2 cut(s)	687, 890
Alw26I	GTCTC	3 cut(s)	61, 445, 545
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	2 cut(s)	432, 796
ApaI	GGGCCC	1 cut(s)	800
ApeKI	GCWGC	4 cut(s)	130, 173, 378, 722
ApoI	RAATTY	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	930
AspS9I	GGNCC	3 cut(s)	527, 796, 797
AsuHPI	GGTGA	2 cut(s)	13, 751
AsuII	TTCGAA	2 cut(s)	663, 857
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	527
AxyI	CCTNAGG	1 cut(s)	625
BaeGI	GKGCMC	1 cut(s)	800
BanII	GRGCYC	2 cut(s)	687, 800
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	687, 890
BbvI	GCAGC	4 cut(s)	142, 160, 390, 709
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	1 cut(s)	524
BcoDI	GTCTC	3 cut(s)	61, 445, 545
BfaI	CTAG	5 cut(s)	6, 26, 99, 549, 746
BfrI	CTTAAG	1 cut(s)	881
BisI	GCNGC	6 cut(s)	128, 131, 174, 177, 379, 723
BlsI	GCNGC	6 cut(s)	129, 132, 175, 178, 380, 724
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	3 cut(s)	527, 796, 797
BmiI	GGNNCC	3 cut(s)	528, 529, 798
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	2 cut(s)	524, 579
BmtI	GCTAGC	1 cut(s)	9
BoxI	GACNNNNGTC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	81
Bpu14I	TTCGAA	2 cut(s)	663, 857
BpuEI	CTTGAG	1 cut(s)	338
Bsa29I	ATCGAT	1 cut(s)	851
BsaHI	GRCGYC	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 812
Bse1I	ACTGG	2 cut(s)	661, 731
Bse21I	CCTNAGG	1 cut(s)	625
Bse3DI	GCAATG	1 cut(s)	961
BseBI	CCWGG	1 cut(s)	524
BseCI	ATCGAT	1 cut(s)	851
BseDI	CCNNGG	1 cut(s)	523
BseGI	GGATG	2 cut(s)	652, 784
BseLI	CCNNNNNNNGG	2 cut(s)	99, 812
BseMI	GCAATG	1 cut(s)	961
BseNI	ACTGG	2 cut(s)	661, 731
BseSI	GKGCMC	1 cut(s)	800
BseXI	GCAGC	4 cut(s)	142, 160, 390, 709
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	928
BshFI	GGCC	2 cut(s)	434, 798
BshVI	ATCGAT	1 cut(s)	851
BsiHKAI	GWGCWC	2 cut(s)	687, 890
BsiWI	CGTACG	1 cut(s)	139
BslFI	GGGAC	2 cut(s)	513, 590
BslI	CCNNNNNNNGG	2 cut(s)	99, 812
BsmAI	GTCTC	3 cut(s)	61, 445, 545
BsmBI	CGTCTC	1 cut(s)	445
BsmFI	GGGAC	2 cut(s)	513, 590
BsnI	GGCC	2 cut(s)	434, 798
Bso31I	GGTCTC	1 cut(s)	61
Bsp119I	TTCGAA	2 cut(s)	663, 857
Bsp120I	GGGCCC	1 cut(s)	796
Bsp1286I	GDGCHC	3 cut(s)	687, 800, 890
Bsp143I	GATC	3 cut(s)	219, 649, 786
BspACI	CCGC	3 cut(s)	123, 127, 176
BspANI	GGCC	2 cut(s)	434, 798
BspDI	ATCGAT	1 cut(s)	851
BspFNI	CGCG	1 cut(s)	928
BspLI	GGNNCC	3 cut(s)	528, 529, 798
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	214
BspQI	GCTCTTC	1 cut(s)	354
BspT104I	TTCGAA	2 cut(s)	663, 857
BspTI	CTTAAG	1 cut(s)	881
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	961
BsrI	ACTGG	2 cut(s)	661, 731
BssECI	CCNNGG	1 cut(s)	523
BssMI	GATC	3 cut(s)	219, 649, 786
BssNI	GRCGYC	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	524
Bst4CI	ACNGT	5 cut(s)	563, 574, 696, 812, 896
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	1 cut(s)	145
BstAFI	CTTAAG	1 cut(s)	881
BstBI	TTCGAA	2 cut(s)	663, 857
BstC8I	GCNNGC	2 cut(s)	7, 125
BstDEI	CTNAG	3 cut(s)	395, 625, 960
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	652, 784
BstFNI	CGCG	1 cut(s)	928
BstHHI	GCGC	1 cut(s)	930
BstKTI	GATC	3 cut(s)	222, 652, 789
BstMAI	GTCTC	3 cut(s)	61, 445, 545
BstMBI	GATC	3 cut(s)	219, 649, 786
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	1 cut(s)	524
BstPAI	GACNNNNGTC	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	522
BstSLI	GKGCMC	1 cut(s)	800
BstUI	CGCG	1 cut(s)	928
BstV1I	GCAGC	4 cut(s)	142, 160, 390, 709
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
Bsu15I	ATCGAT	1 cut(s)	851
Bsu36I	CCTNAGG	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	434, 798
BsuTUI	ATCGAT	1 cut(s)	851
BtsCI	GGATG	2 cut(s)	652, 784
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	2 cut(s)	388, 568
Cac8I	GCNNGC	2 cut(s)	7, 125
CfoI	GCGC	1 cut(s)	930
Cfr13I	GGNCC	3 cut(s)	527, 796, 797
ClaI	ATCGAT	1 cut(s)	851
Csp6I	GTAC	3 cut(s)	140, 546, 816
CviAII	CATG	2 cut(s)	391, 714
CviQI	GTAC	3 cut(s)	140, 546, 816
DdeI	CTNAG	3 cut(s)	395, 625, 960
DpnI	GATC	3 cut(s)	221, 651, 788
DpnII	GATC	3 cut(s)	219, 649, 786
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	685
Eco24I	GRGCYC	2 cut(s)	687, 800
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	527
Eco53kI	GAGCTC	1 cut(s)	685
Eco81I	CCTNAGG	1 cut(s)	625
EcoICRI	GAGCTC	1 cut(s)	685
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoO109I	RGGNCCY	3 cut(s)	527, 796, 797
EcoRII	CCWGG	1 cut(s)	522
EcoT38I	GRGCYC	2 cut(s)	687, 800
Esp3I	CGTCTC	1 cut(s)	445
FaeI	CATG	2 cut(s)	394, 717
FalI	AAGNNNNNCTT	5 cut(s)	270, 302, 767, 799, 943
FaqI	GGGAC	2 cut(s)	513, 590
FatI	CATG	2 cut(s)	390, 713
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	6 cut(s)	128, 131, 174, 177, 379, 723
FokI	GGATG	2 cut(s)	659, 791
FriOI	GRGCYC	2 cut(s)	687, 800
Fsp4HI	GCNGC	6 cut(s)	128, 131, 174, 177, 379, 723
FspBI	CTAG	5 cut(s)	6, 26, 99, 549, 746
GlaI	GCGC	1 cut(s)	929
GluI	GCNGC	6 cut(s)	128, 131, 174, 177, 379, 723
GsaI	CCCAGC	1 cut(s)	611
HaeIII	GGCC	2 cut(s)	434, 798
HhaI	GCGC	1 cut(s)	930
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	2 cut(s)	394, 717
Hin6I	GCGC	1 cut(s)	928
HinP1I	GCGC	1 cut(s)	928
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	1 cut(s)	823
HphI	GGTGA	2 cut(s)	13, 751
Hpy166II	GTNNAC	2 cut(s)	559, 577
Hpy188I	TCNGA	3 cut(s)	66, 403, 654
Hpy188III	TCNNGA	2 cut(s)	419, 784
Hpy8I	GTNNAC	2 cut(s)	559, 577
Hpy99I	CGWCG	3 cut(s)	147, 150, 169
HpyAV	CCTTC	5 cut(s)	28, 163, 368, 769, 941
HpyCH4III	ACNGT	5 cut(s)	563, 574, 696, 812, 896
HpyCH4IV	ACGT	3 cut(s)	145, 204, 438
HpyCH4V	TGCA	2 cut(s)	106, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	3 cut(s)	395, 625, 960
HpySE526I	ACGT	3 cut(s)	145, 204, 438
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	394, 717
HspAI	GCGC	1 cut(s)	928
KflI	GGGWCCC	1 cut(s)	527
Kzo9I	GATC	3 cut(s)	219, 649, 786
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	4 cut(s)	37, 597, 682, 690
Lsp1109I	GCAGC	4 cut(s)	142, 160, 390, 709
LweI	GCATC	2 cut(s)	524, 579
MaeI	CTAG	5 cut(s)	6, 26, 99, 549, 746
MaeII	ACGT	3 cut(s)	145, 204, 438
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	3 cut(s)	221, 651, 788
MboI	GATC	3 cut(s)	219, 649, 786
MboII	GAAGA	6 cut(s)	81, 265, 278, 371, 598, 631
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	3 cut(s)	687, 800, 890
MluCI	AATT	5 cut(s)	11, 43, 341, 453, 666
MnlI	CCTC	3 cut(s)	103, 193, 331
MseI	TTAA	3 cut(s)	488, 791, 882
MspA1I	CMGCKG	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	881
MspR9I	CCNGG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	524
MvnI	CGCG	1 cut(s)	928
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeII	GATC	3 cut(s)	219, 649, 786
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	394, 717
NlaIV	GGNNCC	3 cut(s)	528, 529, 798
NmuCI	GTSAC	1 cut(s)	563
NspV	TTCGAA	2 cut(s)	663, 857
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	848
PfeI	GAWTC	1 cut(s)	823
Pfl23II	CGTACG	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	812
PkrI	GCNGC	6 cut(s)	129, 132, 175, 178, 380, 724
PpuMI	RGGWCCY	1 cut(s)	527
PshAI	GACNNNNGTC	1 cut(s)	496
Psp124BI	GAGCTC	1 cut(s)	687
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	522
PspFI	CCCAGC	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	522
PspLI	CGTACG	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	528, 529, 798
PspOMI	GGGCCC	1 cut(s)	796
PspPI	GGNCC	3 cut(s)	527, 796, 797
PspPPI	RGGWCCY	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	3 cut(s)	141, 547, 817
RsaNI	GTAC	3 cut(s)	140, 546, 816
SacI	GAGCTC	1 cut(s)	687
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	488, 791, 882
SatI	GCNGC	6 cut(s)	128, 131, 174, 177, 379, 723
Sau3AI	GATC	3 cut(s)	219, 649, 786
Sau96I	GGNCC	3 cut(s)	527, 796, 797
ScrFI	CCNGG	1 cut(s)	524
SduI	GDGCHC	3 cut(s)	687, 800, 890
SfaNI	GCATC	2 cut(s)	524, 579
SfuI	TTCGAA	2 cut(s)	663, 857
SinI	GGWCC	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	353, 881
SmoI	CTYRAG	2 cut(s)	353, 881
Sse9I	AATT	5 cut(s)	11, 43, 341, 453, 666
SsiI	CCGC	3 cut(s)	123, 127, 176
SspMI	CTAG	5 cut(s)	6, 26, 99, 549, 746
SstI	GAGCTC	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	522
TaaI	ACNGT	5 cut(s)	563, 574, 696, 812, 896
TaiI	ACGT	3 cut(s)	148, 207, 441
TaqI	TCGA	5 cut(s)	167, 663, 842, 851, 857
TasI	AATT	5 cut(s)	11, 43, 341, 453, 666
TauI	GCSGC	2 cut(s)	130, 179
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	3 cut(s)	488, 791, 882
Tru9I	TTAA	3 cut(s)	488, 791, 882
TscAI	CASTG	2 cut(s)	388, 568
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	4 cut(s)	130, 173, 378, 722
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	2 cut(s)	420, 694
TspGWI	ACGGA	3 cut(s)	153, 533, 894
TspRI	CASTG	2 cut(s)	388, 568
Van91I	CCANNNNNTGG	1 cut(s)	812
Vha464I	CTTAAG	1 cut(s)	881
VpaK11BI	GGWCC	1 cut(s)	527
XagI	CCTNNNNNAGG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	341
XspI	CTAG	5 cut(s)	6, 26, 99, 549, 746
ZraI	GACGTC	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.