Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009265

Physical Location & Seq

Genomic Coordinates Forward (+)

50745247 .. 50749088

Gene Structure 3842 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTAGCAAATTAGCCTTCACCCTAGTAGCTCCGACTCGTAATTCCCACAATCCTTCCATTCAGAGACCATTTGTTTCAGTTTCGTCGACTTCCCCTACTAGGGTGCAGTCGTTTCAGTTCAGCGGGCGGCAGCTCTGCGTACGACGTCGTTTGCTGGTGCTTCCGTCTAAGGCTGCGGCTGACCAACAGCAAGAAAATGAGGACGTTGTTGATAGTAAGATCCTGCCATATTGTAGCATAGACAAGAAAGGGAAGAAGTCATTGGGAGAACTTGAACAAGACTTTCTTCAAGCTTTACAATCATTTTATTATGATGGAAAAGCTATTATGTCAAATGAGGAATTTGATAATCTCAAGGAAGAGCTAATGTGGGAAGGCAGCAGTGTTGTCATGCTAAGTTCTGATGAACAAAAGTTTCTGGAAGCTTCAATGGCCTACGTCTCTGGGAAACCAATTCTGAGCGACCAAGAGTATGATGATTTGAAGTTAAGACTAAAGTCGCAAGGGAGTGATATTGTCGTCCTGGGTCCCAGATGCAGTCTCCGTACTAGAAAGGTTTACAGTGACCTGACTGTTGACTATTTGAAGATGCTCCTGCTGAATGTCCCAGCAACCATTGTTGCCTTAGGAGCGTTTTTCTTCTTGGATGATCTGACTGGTTTCGAAATTACATATCTTTTGGAGCTCCCAGAACCGTTCAGCTTCATTTTCACATGGTTTGCTGCCGTGCCAGTCATAGTTTATCTAGCTACACAACTCACCAAACTTATTGTGAAGGATGTCTTGATCTTAAAGGGCCCTTGTCCAAACTGTGGTACAGAGAATCAGTCATTCTTTGGGTCGATACTATCGATTTCGAATGGTGGTTCTACCAACAACCTTAAGTGCTCAAACTGTGGAACTCCGTTGGTATATGATAAGACTACACGCTTGATTACCTTGCCAGAAGGAAGCAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016730 GO:0019684 GO:0019904 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

35.67

Weight (kDa)

5.45

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11960 AT4G11960 AT4G22890 AT4G22890 AT4G22890 AT4G22890 AT4G22890
fragaria_vesca	FvH4_5g01180 FvH4_5g01180
malus_domestica	MD04G1071000.v1.1
prunus_persica	Prupe.5G086900_v2.0.a1
pyrus_communis	pycom04g06420
rosa_chinensis	RchiOBHm_Chr7g0199911
rosa_laevigata	RLG00000003760
rosa_multiflora	Rmu_sc0002748.1_g000009
rosa_roxburghii	Rroxscaffold_3G00256380
rosa_rugosa	Rorug07G0057000
rosa_samantha	Rh7AG182400 Rh7BG185300 Rh7CG191900 Rh7DG185200
rosa_wichuraiana	Rw7G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	89
AciI	CCGC	3 cut(s)	126, 130, 179
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	3 cut(s)	144, 550, 820
AfiI	CCNNNNNNNGG	3 cut(s)	102, 103, 815
AflII	CTTAAG	1 cut(s)	884
AgsI	TTSAA	5 cut(s)	278, 293, 432, 487, 589
AjnI	CCWGG	1 cut(s)	525
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	9 cut(s)	32, 136, 296, 326, 367, 428, 688, 705, 752
AluI	AGCT	9 cut(s)	32, 136, 296, 326, 367, 428, 688, 705, 752
Alw21I	GWGCWC	2 cut(s)	690, 893
Alw26I	GTCTC	3 cut(s)	61, 448, 548
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	2 cut(s)	435, 799
ApaI	GGGCCC	1 cut(s)	803
ApeKI	GCWGC	4 cut(s)	133, 176, 381, 725
ApoI	RAATTY	1 cut(s)	344
AspS9I	GGNCC	3 cut(s)	530, 799, 800
AsuHPI	GGTGA	2 cut(s)	13, 754
AsuII	TTCGAA	2 cut(s)	666, 860
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	530
AxyI	CCTNAGG	1 cut(s)	628
BaeGI	GKGCMC	1 cut(s)	803
BanII	GRGCYC	2 cut(s)	690, 803
Bbv12I	GWGCWC	2 cut(s)	690, 893
BbvI	GCAGC	4 cut(s)	145, 163, 393, 712
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	713
BciT130I	CCWGG	1 cut(s)	527
BcoDI	GTCTC	3 cut(s)	61, 448, 548
BfaI	CTAG	5 cut(s)	6, 26, 102, 552, 749
BfrI	CTTAAG	1 cut(s)	884
BisI	GCNGC	6 cut(s)	131, 134, 177, 180, 382, 726
BlsI	GCNGC	6 cut(s)	132, 135, 178, 181, 383, 727
Bme1390I	CCNGG	1 cut(s)	527
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	3 cut(s)	530, 799, 800
BmiI	GGNNCC	3 cut(s)	531, 532, 801
BmrFI	CCNGG	1 cut(s)	527
BmsI	GCATC	2 cut(s)	527, 582
BmtI	GCTAGC	1 cut(s)	9
BoxI	GACNNNNGTC	1 cut(s)	499
Bpu14I	TTCGAA	2 cut(s)	666, 860
BpuEI	CTTGAG	1 cut(s)	341
Bsa29I	ATCGAT	1 cut(s)	854
BsaHI	GRCGYC	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 103, 815
Bse1I	ACTGG	2 cut(s)	664, 734
Bse21I	CCTNAGG	1 cut(s)	628
Bse3DI	GCAATG	1 cut(s)	964
BseBI	CCWGG	1 cut(s)	527
BseCI	ATCGAT	1 cut(s)	854
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	2 cut(s)	655, 787
BseLI	CCNNNNNNNGG	3 cut(s)	102, 103, 815
BseMI	GCAATG	1 cut(s)	964
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	2 cut(s)	664, 734
BseSI	GKGCMC	1 cut(s)	803
BseXI	GCAGC	4 cut(s)	145, 163, 393, 712
BseYI	CCCAGC	1 cut(s)	610
BsgI	GTGCAG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	437, 801
BshVI	ATCGAT	1 cut(s)	854
BsiHKAI	GWGCWC	2 cut(s)	690, 893
BsiWI	CGTACG	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	516, 593
BslI	CCNNNNNNNGG	3 cut(s)	102, 103, 815
BsmAI	GTCTC	3 cut(s)	61, 448, 548
BsmBI	CGTCTC	1 cut(s)	448
BsmFI	GGGAC	2 cut(s)	516, 593
BsnI	GGCC	2 cut(s)	437, 801
Bso31I	GGTCTC	1 cut(s)	61
Bsp119I	TTCGAA	2 cut(s)	666, 860
Bsp120I	GGGCCC	1 cut(s)	799
Bsp1286I	GDGCHC	3 cut(s)	690, 803, 893
Bsp143I	GATC	3 cut(s)	222, 652, 789
BspACI	CCGC	3 cut(s)	126, 130, 179
BspANI	GGCC	2 cut(s)	437, 801
BspCNI	CTCAG	1 cut(s)	453
BspDI	ATCGAT	1 cut(s)	854
BspLI	GGNNCC	3 cut(s)	531, 532, 801
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	217
BspQI	GCTCTTC	1 cut(s)	357
BspT104I	TTCGAA	2 cut(s)	666, 860
BspTI	CTTAAG	1 cut(s)	884
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	964
BsrI	ACTGG	2 cut(s)	664, 734
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	3 cut(s)	222, 652, 789
BssNI	GRCGYC	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	5 cut(s)	566, 577, 699, 815, 899
Bst6I	CTCTTC	1 cut(s)	357
BstACI	GRCGYC	1 cut(s)	148
BstAFI	CTTAAG	1 cut(s)	884
BstBI	TTCGAA	2 cut(s)	666, 860
BstC8I	GCNNGC	2 cut(s)	7, 128
BstDEI	CTNAG	5 cut(s)	171, 398, 461, 628, 963
BstF5I	GGATG	2 cut(s)	655, 787
BstKTI	GATC	3 cut(s)	225, 655, 792
BstMAI	GTCTC	3 cut(s)	61, 448, 548
BstMBI	GATC	3 cut(s)	222, 652, 789
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 632
BstNI	CCWGG	1 cut(s)	527
BstPAI	GACNNNNGTC	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	803
BstV1I	GCAGC	4 cut(s)	145, 163, 393, 712
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	854
Bsu36I	CCTNAGG	1 cut(s)	628
BsuRI	GGCC	2 cut(s)	437, 801
BsuTUI	ATCGAT	1 cut(s)	854
BtsCI	GGATG	2 cut(s)	655, 787
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	391, 571
Cac8I	GCNNGC	2 cut(s)	7, 128
Cfr13I	GGNCC	3 cut(s)	530, 799, 800
ClaI	ATCGAT	1 cut(s)	854
Csp6I	GTAC	3 cut(s)	143, 549, 819
CviAII	CATG	2 cut(s)	394, 717
CviQI	GTAC	3 cut(s)	143, 549, 819
DdeI	CTNAG	5 cut(s)	171, 398, 461, 628, 963
DpnI	GATC	3 cut(s)	224, 654, 791
DpnII	GATC	3 cut(s)	222, 652, 789
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Ecl136II	GAGCTC	1 cut(s)	688
Eco24I	GRGCYC	2 cut(s)	690, 803
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	1 cut(s)	688
Eco81I	CCTNAGG	1 cut(s)	628
EcoICRI	GAGCTC	1 cut(s)	688
EcoO109I	RGGNCCY	3 cut(s)	530, 799, 800
EcoRII	CCWGG	1 cut(s)	525
EcoT38I	GRGCYC	2 cut(s)	690, 803
Esp3I	CGTCTC	1 cut(s)	448
FaeI	CATG	2 cut(s)	397, 720
FalI	AAGNNNNNCTT	5 cut(s)	273, 305, 770, 802, 946
FaqI	GGGAC	2 cut(s)	516, 593
FatI	CATG	2 cut(s)	393, 716
FauI	CCCGC	1 cut(s)	119
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	6 cut(s)	131, 134, 177, 180, 382, 726
FokI	GGATG	2 cut(s)	662, 794
FriOI	GRGCYC	2 cut(s)	690, 803
Fsp4HI	GCNGC	6 cut(s)	131, 134, 177, 180, 382, 726
FspBI	CTAG	5 cut(s)	6, 26, 102, 552, 749
GluI	GCNGC	6 cut(s)	131, 134, 177, 180, 382, 726
GsaI	CCCAGC	1 cut(s)	614
HaeIII	GGCC	2 cut(s)	437, 801
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	397, 720
HincII	GTYRAC	2 cut(s)	90, 580
HindII	GTYRAC	2 cut(s)	90, 580
HindIII	AAGCTT	2 cut(s)	294, 426
HinfI	GANTC	2 cut(s)	37, 826
HphI	GGTGA	2 cut(s)	13, 754
Hpy166II	GTNNAC	3 cut(s)	90, 562, 580
Hpy188I	TCNGA	5 cut(s)	36, 66, 406, 462, 657
Hpy188III	TCNNGA	2 cut(s)	422, 787
Hpy8I	GTNNAC	3 cut(s)	90, 562, 580
Hpy99I	CGWCG	3 cut(s)	91, 150, 153
HpyAV	CCTTC	5 cut(s)	28, 66, 371, 772, 944
HpyCH4III	ACNGT	5 cut(s)	566, 577, 699, 815, 899
HpyCH4IV	ACGT	3 cut(s)	148, 207, 441
HpyCH4V	TGCA	2 cut(s)	109, 540
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 632
HpyF3I	CTNAG	5 cut(s)	171, 398, 461, 628, 963
HpySE526I	ACGT	3 cut(s)	148, 207, 441
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	397, 720
KflI	GGGWCCC	1 cut(s)	530
Kzo9I	GATC	3 cut(s)	222, 652, 789
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	5 cut(s)	37, 600, 632, 685, 693
Lsp1109I	GCAGC	4 cut(s)	145, 163, 393, 712
LweI	GCATC	2 cut(s)	527, 582
MaeI	CTAG	5 cut(s)	6, 26, 102, 552, 749
MaeII	ACGT	3 cut(s)	148, 207, 441
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	3 cut(s)	224, 654, 791
MboI	GATC	3 cut(s)	222, 652, 789
MboII	GAAGA	5 cut(s)	268, 281, 374, 601, 634
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	3 cut(s)	690, 803, 893
MluCI	AATT	5 cut(s)	11, 43, 344, 456, 669
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	2 cut(s)	196, 334
MseI	TTAA	3 cut(s)	491, 794, 885
MspA1I	CMGCKG	1 cut(s)	126
MspCI	CTTAAG	1 cut(s)	884
MspR9I	CCNGG	1 cut(s)	527
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	2 cut(s)	434, 632
NdeII	GATC	3 cut(s)	222, 652, 789
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	397, 720
NlaIV	GGNNCC	3 cut(s)	531, 532, 801
NmuCI	GTSAC	1 cut(s)	566
NspV	TTCGAA	2 cut(s)	666, 860
PciSI	GCTCTTC	1 cut(s)	357
PcsI	WCGNNNNNNNCGW	1 cut(s)	851
PfeI	GAWTC	1 cut(s)	826
Pfl23II	CGTACG	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	815
PkrI	GCNGC	6 cut(s)	132, 135, 178, 181, 383, 727
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	530
PshAI	GACNNNNGTC	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	690
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	525
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	525
PspLI	CGTACG	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	531, 532, 801
PspOMI	GGGCCC	1 cut(s)	799
PspPI	GGNCC	3 cut(s)	530, 799, 800
PspPPI	RGGWCCY	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	3 cut(s)	144, 550, 820
RsaNI	GTAC	3 cut(s)	143, 549, 819
SacI	GAGCTC	1 cut(s)	690
SalI	GTCGAC	1 cut(s)	88
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	491, 794, 885
SatI	GCNGC	6 cut(s)	131, 134, 177, 180, 382, 726
Sau3AI	GATC	3 cut(s)	222, 652, 789
Sau96I	GGNCC	3 cut(s)	530, 799, 800
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	3 cut(s)	690, 803, 893
SfaNI	GCATC	2 cut(s)	527, 582
SfuI	TTCGAA	2 cut(s)	666, 860
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	356, 884
SmoI	CTYRAG	2 cut(s)	356, 884
Sse9I	AATT	5 cut(s)	11, 43, 344, 456, 669
SsiI	CCGC	3 cut(s)	126, 130, 179
SspMI	CTAG	5 cut(s)	6, 26, 102, 552, 749
SstI	GAGCTC	1 cut(s)	690
StyD4I	CCNGG	1 cut(s)	525
TaaI	ACNGT	5 cut(s)	566, 577, 699, 815, 899
TaiI	ACGT	3 cut(s)	151, 210, 444
TaqI	TCGA	5 cut(s)	89, 666, 845, 854, 860
TasI	AATT	5 cut(s)	11, 43, 344, 456, 669
TauI	GCSGC	2 cut(s)	133, 182
TfiI	GAWTC	1 cut(s)	826
Tru1I	TTAA	3 cut(s)	491, 794, 885
Tru9I	TTAA	3 cut(s)	491, 794, 885
TscAI	CASTG	2 cut(s)	391, 571
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	4 cut(s)	133, 176, 381, 725
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	2 cut(s)	423, 697
TspGWI	ACGGA	3 cut(s)	156, 536, 897
TspRI	CASTG	2 cut(s)	391, 571
Van91I	CCANNNNNTGG	1 cut(s)	815
Vha464I	CTTAAG	1 cut(s)	884
VpaK11BI	GGWCC	1 cut(s)	530
XapI	RAATTY	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	89
XspI	CTAG	5 cut(s)	6, 26, 102, 552, 749
ZraI	GACGTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.