Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009265

Physical Location & Seq

Genomic Coordinates Reverse (-)

17881323 .. 17885284

Gene Structure 3962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17890

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCCAGCAAATTAGCCTTCACCCTAGTAGCTCCTACTCGTAATTCCTACAATCCTCCTATTCAGAGACCCTTTGTTTCGTCAGTTTCGTCTTCCTCTACTAGGGTGCAGTCGTTTCAGTTCAGCGGGCGGCAGCTCTGCGTACGACGTCGTTTGCTGCAGGTGCTTCCCTCTAAGGCTGCCGCTGACCAACAGCAAGGAAATGAGGACGTTGTTGATAGTAAGATCCTGCCATATTGTAACATAGACAAGAAAGGGAAGAAGTCATTGGGAGAACTTGAACAAGACTTTCTTCAAGCTCTACAATCATTTTATTATGATGGAAAAGCTATTATGTCAAATGAGGAATTTGATAATCTCAAGGAAGAGCTAATGTGGGAAGGCAGCAGTGTTGTCATGCTAAGTTCTGATGAACAAAAGTTTCTGGAAGCTTCAATGGCCTACGTCTCTGGGAAACCAATTTTGAGCGACCAAGAGTATGATGATTTGAAGTTAAGACTAAAGTCGCAAGGGAGTGATATTGTCGTCCTGGGTCCCAGATGCAGTCTCCGTACTAGAAAGGTTTACAGTGACCTGACTGTTGACTATTTGAAGATGCTCCTGCTGAATGTCCCAGCAACCATTGTTGCCTTAGGAGCGTTTTTCTTCTTGGATGATCTGACTGGTTTCGAAATTACATATCTTTTGGAGCTTCCAGAACCGTTCAGCTTCATTTTCACATGGTTTGCTGCCGTGCCAGTCATAGTTTATCTAGCTACGCAACTCACCAAACTTATTGTGAAGGATGTCTTGATCTTAAAGGGCCCTTGTCCAAACTGTGGTACAGAGAATCAGTCATTCTTTGGGTCGATCCTATCGATTTCGAATGGTGGTTCTACCAACAACCTTAAGTGCTCAAACTGTGGAACTCCGTTGGTATATGATAAGACTACGCGCTTGATTACCTTGCCAGAAGGAAGCAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016730 GO:0019684 GO:0019904 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

35.76

Weight (kDa)

5.48

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11960 AT4G11960 AT4G22890 AT4G22890 AT4G22890 AT4G22890 AT4G22890
fragaria_vesca	FvH4_5g01180 FvH4_5g01180
malus_domestica	MD04G1071000.v1.1
prunus_persica	Prupe.5G086900_v2.0.a1
pyrus_communis	pycom04g06420
rosa_chinensis	RchiOBHm_Chr7g0199911
rosa_laevigata	RLG00000003760
rosa_multiflora	Rmu_sc0002748.1_g000009
rosa_roxburghii	Rroxscaffold_3G00256380
rosa_rugosa	Rorug07G0057000
rosa_samantha	Rh7AG182400 Rh7BG185300 Rh7CG191900 Rh7DG185200
rosa_wichuraiana	Rw7G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	151
AatII	GACGTC	1 cut(s)	151
Acc36I	ACCTGC	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	818
AccII	CGCG	1 cut(s)	934
AciI	CCGC	3 cut(s)	126, 130, 183
AclWI	GGATC	2 cut(s)	220, 844
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	3 cut(s)	144, 553, 823
AfiI	CCNNNNNNNGG	2 cut(s)	102, 818
AflII	CTTAAG	1 cut(s)	887
AgsI	TTSAA	5 cut(s)	281, 296, 435, 490, 592
AjnI	CCWGG	1 cut(s)	528
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	9 cut(s)	32, 136, 299, 329, 370, 431, 691, 708, 755
AluI	AGCT	9 cut(s)	32, 136, 299, 329, 370, 431, 691, 708, 755
Alw21I	GWGCWC	1 cut(s)	896
Alw26I	GTCTC	3 cut(s)	61, 451, 551
AlwI	GGATC	2 cut(s)	220, 844
AoxI	GGCC	3 cut(s)	3, 438, 802
ApaI	GGGCCC	1 cut(s)	806
ApeKI	GCWGC	5 cut(s)	133, 157, 179, 384, 728
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	936
AspS9I	GGNCC	3 cut(s)	533, 802, 803
AsuHPI	GGTGA	2 cut(s)	13, 757
AsuII	TTCGAA	2 cut(s)	669, 863
AvaII	GGWCC	1 cut(s)	533
AxyI	CCTNAGG	1 cut(s)	631
BaeGI	GKGCMC	1 cut(s)	806
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	896
BbvI	GCAGC	5 cut(s)	144, 145, 166, 396, 715
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	716
BciT130I	CCWGG	1 cut(s)	530
BcoDI	GTCTC	3 cut(s)	61, 451, 551
BfaI	CTAG	4 cut(s)	26, 102, 555, 752
BfmI	CTRYAG	1 cut(s)	158
BfrI	CTTAAG	1 cut(s)	887
BfuAI	ACCTGC	1 cut(s)	151
BisI	GCNGC	7 cut(s)	131, 134, 158, 180, 183, 385, 729
BlsI	GCNGC	7 cut(s)	132, 135, 159, 181, 184, 386, 730
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	1 cut(s)	533
BmgT120I	GGNCC	3 cut(s)	533, 802, 803
BmiI	GGNNCC	3 cut(s)	534, 535, 804
BmrFI	CCNGG	1 cut(s)	530
BmsI	GCATC	2 cut(s)	530, 585
BoxI	GACNNNNGTC	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	84
Bpu14I	TTCGAA	2 cut(s)	669, 863
BpuEI	CTTGAG	1 cut(s)	344
Bsa29I	ATCGAT	1 cut(s)	857
BsaHI	GRCGYC	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	529
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 818
Bse1I	ACTGG	2 cut(s)	667, 737
Bse21I	CCTNAGG	1 cut(s)	631
Bse3DI	GCAATG	1 cut(s)	967
BseBI	CCWGG	1 cut(s)	530
BseCI	ATCGAT	1 cut(s)	857
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	2 cut(s)	658, 790
BseLI	CCNNNNNNNGG	2 cut(s)	102, 818
BseMI	GCAATG	1 cut(s)	967
BseNI	ACTGG	2 cut(s)	667, 737
BseSI	GKGCMC	1 cut(s)	806
BseXI	GCAGC	5 cut(s)	144, 145, 166, 396, 715
BseYI	CCCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	934
BshFI	GGCC	3 cut(s)	5, 440, 804
BshVI	ATCGAT	1 cut(s)	857
BsiHKAI	GWGCWC	1 cut(s)	896
BsiWI	CGTACG	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	519, 596
BslI	CCNNNNNNNGG	2 cut(s)	102, 818
BsmAI	GTCTC	3 cut(s)	61, 451, 551
BsmBI	CGTCTC	1 cut(s)	451
BsmFI	GGGAC	2 cut(s)	519, 596
BsnI	GGCC	3 cut(s)	5, 440, 804
Bso31I	GGTCTC	1 cut(s)	61
Bsp119I	TTCGAA	2 cut(s)	669, 863
Bsp120I	GGGCCC	1 cut(s)	802
Bsp1286I	GDGCHC	2 cut(s)	806, 896
Bsp143I	GATC	4 cut(s)	225, 655, 792, 849
BspACI	CCGC	3 cut(s)	126, 130, 183
BspANI	GGCC	3 cut(s)	5, 440, 804
BspDI	ATCGAT	1 cut(s)	857
BspFNI	CGCG	1 cut(s)	934
BspLI	GGNNCC	3 cut(s)	534, 535, 804
BspMAI	CTGCAG	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	151
BspPI	GGATC	2 cut(s)	220, 844
BspQI	GCTCTTC	1 cut(s)	360
BspT104I	TTCGAA	2 cut(s)	669, 863
BspTI	CTTAAG	1 cut(s)	887
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	967
BsrI	ACTGG	2 cut(s)	667, 737
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	4 cut(s)	225, 655, 792, 849
BssNI	GRCGYC	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	5 cut(s)	569, 580, 702, 818, 902
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	148
BstAFI	CTTAAG	1 cut(s)	887
BstBI	TTCGAA	2 cut(s)	669, 863
BstC8I	GCNNGC	2 cut(s)	7, 128
BstDEI	CTNAG	4 cut(s)	174, 401, 631, 966
BstENI	CCTNNNNNAGG	1 cut(s)	100
BstF5I	GGATG	2 cut(s)	658, 790
BstFNI	CGCG	1 cut(s)	934
BstHHI	GCGC	1 cut(s)	936
BstKTI	GATC	4 cut(s)	228, 658, 795, 852
BstMAI	GTCTC	3 cut(s)	61, 451, 551
BstMBI	GATC	4 cut(s)	225, 655, 792, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 437, 635
BstNI	CCWGG	1 cut(s)	530
BstPAI	GACNNNNGTC	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	806
BstUI	CGCG	1 cut(s)	934
BstV1I	GCAGC	5 cut(s)	144, 145, 166, 396, 715
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	857
Bsu36I	CCTNAGG	1 cut(s)	631
BsuRI	GGCC	3 cut(s)	5, 440, 804
BsuTUI	ATCGAT	1 cut(s)	857
BtsCI	GGATG	2 cut(s)	658, 790
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	394, 574
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	7, 128
CfoI	GCGC	1 cut(s)	936
Cfr13I	GGNCC	3 cut(s)	533, 802, 803
ClaI	ATCGAT	1 cut(s)	857
Csp6I	GTAC	3 cut(s)	143, 552, 822
CviAII	CATG	2 cut(s)	397, 720
CviQI	GTAC	3 cut(s)	143, 552, 822
DdeI	CTNAG	4 cut(s)	174, 401, 631, 966
DpnI	GATC	4 cut(s)	227, 657, 794, 851
DpnII	GATC	4 cut(s)	225, 655, 792, 849
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	806
Eco31I	GGTCTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	533
Eco81I	CCTNAGG	1 cut(s)	631
EcoNI	CCTNNNNNAGG	1 cut(s)	100
EcoO109I	RGGNCCY	3 cut(s)	533, 802, 803
EcoRII	CCWGG	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	806
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	2 cut(s)	400, 723
FalI	AAGNNNNNCTT	5 cut(s)	276, 308, 773, 805, 949
FaqI	GGGAC	2 cut(s)	519, 596
FatI	CATG	2 cut(s)	396, 719
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	7 cut(s)	131, 134, 158, 180, 183, 385, 729
FokI	GGATG	2 cut(s)	665, 797
FriOI	GRGCYC	1 cut(s)	806
Fsp4HI	GCNGC	7 cut(s)	131, 134, 158, 180, 183, 385, 729
FspBI	CTAG	4 cut(s)	26, 102, 555, 752
GlaI	GCGC	1 cut(s)	935
GluI	GCNGC	7 cut(s)	131, 134, 158, 180, 183, 385, 729
GsaI	CCCAGC	1 cut(s)	617
HaeIII	GGCC	3 cut(s)	5, 440, 804
HhaI	GCGC	1 cut(s)	936
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	400, 723
Hin6I	GCGC	1 cut(s)	934
HinP1I	GCGC	1 cut(s)	934
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	1 cut(s)	829
HphI	GGTGA	2 cut(s)	13, 757
Hpy166II	GTNNAC	2 cut(s)	565, 583
Hpy188I	TCNGA	3 cut(s)	66, 409, 660
Hpy188III	TCNNGA	3 cut(s)	425, 695, 790
Hpy8I	GTNNAC	2 cut(s)	565, 583
Hpy99I	CGWCG	2 cut(s)	150, 153
HpyAV	CCTTC	4 cut(s)	28, 374, 775, 947
HpyCH4III	ACNGT	5 cut(s)	569, 580, 702, 818, 902
HpyCH4IV	ACGT	3 cut(s)	148, 210, 444
HpyCH4V	TGCA	3 cut(s)	109, 160, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 437, 635
HpyF3I	CTNAG	4 cut(s)	174, 401, 631, 966
HpySE526I	ACGT	3 cut(s)	148, 210, 444
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	400, 723
HspAI	GCGC	1 cut(s)	934
KflI	GGGWCCC	1 cut(s)	533
Kzo9I	GATC	4 cut(s)	225, 655, 792, 849
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	4 cut(s)	37, 603, 635, 688
Lsp1109I	GCAGC	5 cut(s)	144, 145, 166, 396, 715
LweI	GCATC	2 cut(s)	530, 585
MaeI	CTAG	4 cut(s)	26, 102, 555, 752
MaeII	ACGT	3 cut(s)	148, 210, 444
MaeIII	GTNAC	2 cut(s)	239, 569
MalI	GATC	4 cut(s)	227, 657, 794, 851
MboI	GATC	4 cut(s)	225, 655, 792, 849
MboII	GAAGA	6 cut(s)	84, 271, 284, 377, 604, 637
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	2 cut(s)	806, 896
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	11, 43, 347, 459, 672
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	5 cut(s)	66, 106, 181, 199, 337
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	494, 797, 888
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	126, 185
MspCI	CTTAAG	1 cut(s)	887
MspR9I	CCNGG	1 cut(s)	530
MvaI	CCWGG	1 cut(s)	530
MvnI	CGCG	1 cut(s)	934
MwoI	GCNNNNNNNGC	3 cut(s)	163, 437, 635
NdeII	GATC	4 cut(s)	225, 655, 792, 849
NlaIII	CATG	2 cut(s)	400, 723
NlaIV	GGNNCC	3 cut(s)	534, 535, 804
NmuCI	GTSAC	1 cut(s)	569
NspV	TTCGAA	2 cut(s)	669, 863
PaqCI	CACCTGC	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	2 cut(s)	86, 854
PfeI	GAWTC	1 cut(s)	829
Pfl23II	CGTACG	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	818
PkrI	GCNGC	7 cut(s)	132, 135, 159, 181, 184, 386, 730
PpuMI	RGGWCCY	1 cut(s)	533
PshAI	GACNNNNGTC	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	528
PspFI	CCCAGC	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	528
PspLI	CGTACG	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	534, 535, 804
PspOMI	GGGCCC	1 cut(s)	802
PspPI	GGNCC	3 cut(s)	533, 802, 803
PspPPI	RGGWCCY	1 cut(s)	533
PstI	CTGCAG	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	3 cut(s)	144, 553, 823
RsaNI	GTAC	3 cut(s)	143, 552, 822
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	494, 797, 888
SatI	GCNGC	7 cut(s)	131, 134, 158, 180, 183, 385, 729
Sau3AI	GATC	4 cut(s)	225, 655, 792, 849
Sau96I	GGNCC	3 cut(s)	533, 802, 803
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	2 cut(s)	806, 896
SfaNI	GCATC	2 cut(s)	530, 585
SfcI	CTRYAG	1 cut(s)	158
SfuI	TTCGAA	2 cut(s)	669, 863
SinI	GGWCC	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	359, 887
SmoI	CTYRAG	2 cut(s)	359, 887
Sse9I	AATT	5 cut(s)	11, 43, 347, 459, 672
SsiI	CCGC	3 cut(s)	126, 130, 183
SspMI	CTAG	4 cut(s)	26, 102, 555, 752
StyD4I	CCNGG	1 cut(s)	528
TaaI	ACNGT	5 cut(s)	569, 580, 702, 818, 902
TaiI	ACGT	3 cut(s)	151, 213, 447
TaqI	TCGA	4 cut(s)	669, 848, 857, 863
TasI	AATT	5 cut(s)	11, 43, 347, 459, 672
TauI	GCSGC	2 cut(s)	133, 185
TfiI	GAWTC	1 cut(s)	829
Tru1I	TTAA	3 cut(s)	494, 797, 888
Tru9I	TTAA	3 cut(s)	494, 797, 888
TscAI	CASTG	2 cut(s)	394, 574
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	5 cut(s)	133, 157, 179, 384, 728
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	2 cut(s)	426, 700
TspGWI	ACGGA	2 cut(s)	539, 900
TspRI	CASTG	2 cut(s)	394, 574
Van91I	CCANNNNNTGG	1 cut(s)	818
Vha464I	CTTAAG	1 cut(s)	887
VpaK11BI	GGWCC	1 cut(s)	533
XagI	CCTNNNNNAGG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	347
XspI	CTAG	4 cut(s)	26, 102, 555, 752
ZraI	GACGTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.