Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009265

Physical Location & Seq

Genomic Coordinates Reverse (-)

9669071 .. 9673409

Gene Structure 4339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1071000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCCACCAAACTAGGGTTCACCTTAACATCTACAACCCCTTTTAATCCCTCTATTCAGAGACCCTTTGTCTCCGTTTCTTCTTCCTCCTCGACTAGGGTTGAGTCTTTTCAGATCAGTGGCAGACAGCTATGCCTCCGCCTCCGCCGCCGCCGCCTTTTGGTACTTCCGGCTAGGGCTACAGCTGACCAACAAGGCAAGGTCGAAAAGGATGACGTTGTGGACAGTAAAATTTTGCCATATTGTAGTATAGACAACAAGAAGAAGTCTTTGGGTGAACTTGAACAAGATTTTCTTCAAGCTCTACAATCGTTCTACTATGACGGAAAAGCTATTATGTCAAATGAGGAATTTGATAACCTTAAGGAAGAACTCATGTGGGAAGGCAGCAGCGTTGTCATGCTAAGTTCTGATGAACAGAAGTTTCTGGAAGCCTCAATGGCCTATGTGTCTGGGAAACCAATTCTGACAGATCAAGAGTATGATGATCTGAAAATGAGGCTAAAGACGGAAGGGAGTGATATTGTAGTCGAGGGTCCAAGATGCAGTCTCCGTACTAGAAAGGTTTACAGTGACCTGACTGTTGATTATTTGAAGATGTTCCTGCTGAATGTCCCTGCGACTGTTGTCGCACTTGCAGCGTTCTTCTTTTTGGATGATCTGACCGGTTTTGAAATCACATATCTTTTGGAGCTGCCGGAGCCATTCAGCTTCATTTTTACATGGTTTGCTGCTGTGCCTGCCGTAGTTTACTTAGCTCAGGCACTGACAAAGCTAATTATCAAGGATGTTTTGATCCTGAAGGGCCCTTGTCCGAACTGTGGTACAGAGAACTTGTCATTCTTTGGGACCATACTTTCCATTTCAAATGGAGGTTCCACCAACAACCTTAAATGCTCAAACTGCGGAACTCCACTGGTATATGATTCGAAGTCGCGCCTGATTACGTTGCCAGATGGAAGCAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016730 GO:0019684 GO:0019904 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

35.95

Weight (kDa)

5.21

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11960 AT4G11960 AT4G22890 AT4G22890 AT4G22890 AT4G22890 AT4G22890
fragaria_vesca	FvH4_5g01180 FvH4_5g01180
malus_domestica	MD04G1071000.v1.1
prunus_persica	Prupe.5G086900_v2.0.a1
pyrus_communis	pycom04g06420
rosa_chinensis	RchiOBHm_Chr7g0199911
rosa_laevigata	RLG00000003760
rosa_multiflora	Rmu_sc0002748.1_g000009
rosa_roxburghii	Rroxscaffold_3G00256380
rosa_rugosa	Rorug07G0057000
rosa_samantha	Rh7AG182400 Rh7BG185300 Rh7CG191900 Rh7DG185200
rosa_wichuraiana	Rw7G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	937
AciI	CCGC	6 cut(s)	139, 145, 148, 151, 154, 906
AclWI	GGATC	1 cut(s)	790
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	231, 350
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	3 cut(s)	165, 556, 826
AfiI	CCNNNNNNNGG	4 cut(s)	15, 96, 160, 821
AflII	CTTAAG	1 cut(s)	362
AgeI	ACCGGT	1 cut(s)	665
AgsI	TTSAA	5 cut(s)	284, 299, 595, 674, 867
AhdI	GACNNNNNGTC	1 cut(s)	68
AjuI	GAANNNNNNNTTGG	3 cut(s)	34, 254, 286
AluBI	AGCT	8 cut(s)	130, 185, 302, 332, 694, 711, 758, 775
AluI	AGCT	8 cut(s)	130, 185, 302, 332, 694, 711, 758, 775
Alw26I	GTCTC	3 cut(s)	55, 76, 554
AlwI	GGATC	1 cut(s)	790
AlwNI	CAGNNNCTG	1 cut(s)	766
AoxI	GGCC	3 cut(s)	3, 441, 805
ApaI	GGGCCC	1 cut(s)	809
ApeKI	GCWGC	5 cut(s)	387, 390, 638, 694, 731
ApoI	RAATTY	2 cut(s)	231, 350
AsiGI	ACCGGT	1 cut(s)	665
Asp700I	GAANNNNTTC	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	939
AspS9I	GGNCC	4 cut(s)	536, 805, 806, 849
AsuHPI	GGTGA	2 cut(s)	13, 287
AsuII	TTCGAA	1 cut(s)	929
AvaII	GGWCC	2 cut(s)	536, 849
BaeGI	GKGCMC	1 cut(s)	809
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	809
BbvI	GCAGC	5 cut(s)	399, 402, 650, 681, 718
BccI	CCATC	1 cut(s)	950
BceAI	ACGGC	1 cut(s)	728
BcoDI	GTCTC	3 cut(s)	55, 76, 554
BfaI	CTAG	4 cut(s)	14, 96, 174, 558
BfmI	CTRYAG	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	362
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	8 cut(s)	148, 151, 154, 388, 391, 639, 695, 732
BlsI	GCNGC	8 cut(s)	149, 152, 155, 389, 392, 640, 696, 733
Bme18I	GGWCC	2 cut(s)	536, 849
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmgT120I	GGNCC	4 cut(s)	536, 805, 806, 849
BmiI	GGNNCC	5 cut(s)	537, 702, 807, 850, 877
BmsI	GCATC	1 cut(s)	533
BoxI	GACNNNNGTC	1 cut(s)	626
Bpu10I	CCTNAGC	1 cut(s)	759
Bpu14I	TTCGAA	1 cut(s)	929
BsaI	GGTCTC	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 96, 160, 821
Bse118I	RCCGGY	1 cut(s)	665
Bse1I	ACTGG	1 cut(s)	921
Bse3DI	GCAATG	1 cut(s)	970
BseGI	GGATG	3 cut(s)	217, 661, 793
BseLI	CCNNNNNNNGG	4 cut(s)	15, 96, 160, 821
BseMI	GCAATG	1 cut(s)	970
BseMII	CTCAG	1 cut(s)	773
BseNI	ACTGG	1 cut(s)	921
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	809
BseXI	GCAGC	5 cut(s)	399, 402, 650, 681, 718
Bsh1236I	CGCG	1 cut(s)	937
BshFI	GGCC	3 cut(s)	5, 443, 807
BshTI	ACCGGT	1 cut(s)	665
BsiSI	CCGG	3 cut(s)	170, 666, 698
BslFI	GGGAC	2 cut(s)	599, 862
BslI	CCNNNNNNNGG	4 cut(s)	15, 96, 160, 821
BsmAI	GTCTC	3 cut(s)	55, 76, 554
BsmFI	GGGAC	2 cut(s)	599, 862
BsnI	GGCC	3 cut(s)	5, 443, 807
Bso31I	GGTCTC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	929
Bsp120I	GGGCCC	1 cut(s)	805
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp143I	GATC	5 cut(s)	114, 472, 487, 658, 795
BspACI	CCGC	6 cut(s)	139, 145, 148, 151, 154, 906
BspANI	GGCC	3 cut(s)	5, 443, 807
BspCNI	CTCAG	1 cut(s)	772
BspFNI	CGCG	1 cut(s)	937
BspLI	GGNNCC	5 cut(s)	537, 702, 807, 850, 877
BspPI	GGATC	1 cut(s)	790
BspT104I	TTCGAA	1 cut(s)	929
BspTI	CTTAAG	1 cut(s)	362
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	970
BsrFI	RCCGGY	1 cut(s)	665
BsrI	ACTGG	1 cut(s)	921
BssAI	RCCGGY	1 cut(s)	665
BssMI	GATC	5 cut(s)	114, 472, 487, 658, 795
Bst4CI	ACNGT	5 cut(s)	227, 572, 583, 625, 821
BstAFI	CTTAAG	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	929
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	3 cut(s)	404, 754, 759
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	217, 661, 793
BstFNI	CGCG	1 cut(s)	937
BstHHI	GCGC	1 cut(s)	939
BstKTI	GATC	5 cut(s)	117, 475, 490, 661, 798
BstMAI	GTCTC	3 cut(s)	55, 76, 554
BstMBI	GATC	5 cut(s)	114, 472, 487, 658, 795
BstMWI	GCNNNNNNNGC	7 cut(s)	147, 153, 440, 638, 700, 740, 903
BstPAI	GACNNNNGTC	1 cut(s)	626
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	809
BstUI	CGCG	1 cut(s)	937
BstV1I	GCAGC	5 cut(s)	399, 402, 650, 681, 718
BsuRI	GGCC	3 cut(s)	5, 443, 807
BtsCI	GGATG	3 cut(s)	217, 661, 793
BtsIMutI	CAGTG	4 cut(s)	124, 577, 764, 914
Cac8I	GCNNGC	1 cut(s)	741
CaiI	CAGNNNCTG	1 cut(s)	766
CfoI	GCGC	1 cut(s)	939
Cfr10I	RCCGGY	1 cut(s)	665
Cfr13I	GGNCC	4 cut(s)	536, 805, 806, 849
Csp6I	GTAC	3 cut(s)	164, 555, 825
CspAI	ACCGGT	1 cut(s)	665
CviAII	CATG	4 cut(s)	376, 400, 723, 969
CviQI	GTAC	3 cut(s)	164, 555, 825
DdeI	CTNAG	3 cut(s)	404, 754, 759
DpnI	GATC	5 cut(s)	116, 474, 489, 660, 797
DpnII	GATC	5 cut(s)	114, 472, 487, 658, 795
DriI	GACNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	68
EciI	GGCGGA	2 cut(s)	128, 134
Eco24I	GRGCYC	1 cut(s)	809
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	536, 849
Eco57I	CTGAAG	1 cut(s)	821
EcoNI	CCTNNNNNAGG	1 cut(s)	94
EcoO109I	RGGNCCY	2 cut(s)	805, 806
EcoT22I	ATGCAT	1 cut(s)	970
EcoT38I	GRGCYC	1 cut(s)	809
FaeI	CATG	4 cut(s)	379, 403, 726, 972
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FaqI	GGGAC	2 cut(s)	599, 862
FatI	CATG	4 cut(s)	375, 399, 722, 968
Fnu4HI	GCNGC	8 cut(s)	148, 151, 154, 388, 391, 639, 695, 732
FokI	GGATG	3 cut(s)	224, 668, 800
FriOI	GRGCYC	1 cut(s)	809
Fsp4HI	GCNGC	8 cut(s)	148, 151, 154, 388, 391, 639, 695, 732
FspBI	CTAG	4 cut(s)	14, 96, 174, 558
GlaI	GCGC	1 cut(s)	938
GluI	GCNGC	8 cut(s)	148, 151, 154, 388, 391, 639, 695, 732
HaeIII	GGCC	3 cut(s)	5, 443, 807
HapII	CCGG	3 cut(s)	170, 666, 698
HhaI	GCGC	1 cut(s)	939
Hin1II	CATG	4 cut(s)	379, 403, 726, 972
Hin6I	GCGC	1 cut(s)	937
HinP1I	GCGC	1 cut(s)	937
HinfI	GANTC	2 cut(s)	104, 926
HpaII	CCGG	3 cut(s)	170, 666, 698
HphI	GGTGA	2 cut(s)	13, 287
Hpy166II	GTNNAC	5 cut(s)	21, 223, 278, 568, 751
Hpy188I	TCNGA	7 cut(s)	60, 114, 412, 468, 492, 663, 816
Hpy188III	TCNNGA	3 cut(s)	428, 476, 799
Hpy8I	GTNNAC	5 cut(s)	21, 223, 278, 568, 751
HpyAV	CCTTC	3 cut(s)	377, 506, 796
HpyCH4III	ACNGT	5 cut(s)	227, 572, 583, 625, 821
HpyCH4IV	ACGT	2 cut(s)	216, 947
HpyCH4V	TGCA	3 cut(s)	546, 638, 968
HpyF10VI	GCNNNNNNNGC	7 cut(s)	147, 153, 440, 638, 700, 740, 903
HpyF3I	CTNAG	3 cut(s)	404, 754, 759
HpySE526I	ACGT	2 cut(s)	216, 947
Hsp92II	CATG	4 cut(s)	379, 403, 726, 972
HspAI	GCGC	1 cut(s)	937
Kzo9I	GATC	5 cut(s)	114, 472, 487, 658, 795
LmnI	GCTCC	2 cut(s)	691, 700
Lsp1109I	GCAGC	5 cut(s)	399, 402, 650, 681, 718
LweI	GCATC	1 cut(s)	533
MaeI	CTAG	4 cut(s)	14, 96, 174, 558
MaeII	ACGT	2 cut(s)	216, 947
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	5 cut(s)	116, 474, 489, 660, 797
MboI	GATC	5 cut(s)	114, 472, 487, 658, 795
MboII	GAAGA	7 cut(s)	72, 75, 274, 287, 380, 607, 637
MhlI	GDGCHC	1 cut(s)	809
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	231, 350, 462, 777
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	113
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	970
MroXI	GAANNNNTTC	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	26, 45, 363, 891
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	185
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	3 cut(s)	170, 666, 698
MvnI	CGCG	1 cut(s)	937
MwoI	GCNNNNNNNGC	7 cut(s)	147, 153, 440, 638, 700, 740, 903
NdeII	GATC	5 cut(s)	114, 472, 487, 658, 795
NlaIII	CATG	4 cut(s)	379, 403, 726, 972
NlaIV	GGNNCC	5 cut(s)	537, 702, 807, 850, 877
NmuCI	GTSAC	1 cut(s)	572
NsiI	ATGCAT	1 cut(s)	970
NspV	TTCGAA	1 cut(s)	929
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	926
PinAI	ACCGGT	1 cut(s)	665
PkrI	GCNGC	8 cut(s)	149, 152, 155, 389, 392, 640, 696, 733
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PshAI	GACNNNNGTC	1 cut(s)	626
PspN4I	GGNNCC	5 cut(s)	537, 702, 807, 850, 877
PspOMI	GGGCCC	1 cut(s)	805
PspPI	GGNCC	4 cut(s)	536, 805, 806, 849
PstNI	CAGNNNCTG	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	3 cut(s)	165, 556, 826
RsaNI	GTAC	3 cut(s)	164, 555, 825
SaqAI	TTAA	4 cut(s)	26, 45, 363, 891
SatI	GCNGC	8 cut(s)	148, 151, 154, 388, 391, 639, 695, 732
Sau3AI	GATC	5 cut(s)	114, 472, 487, 658, 795
Sau96I	GGNCC	4 cut(s)	536, 805, 806, 849
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	1 cut(s)	533
SfcI	CTRYAG	1 cut(s)	180
SfuI	TTCGAA	1 cut(s)	929
SinI	GGWCC	2 cut(s)	536, 849
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	231, 350, 462, 777
SsiI	CCGC	6 cut(s)	139, 145, 148, 151, 154, 906
SspMI	CTAG	4 cut(s)	14, 96, 174, 558
TaaI	ACNGT	5 cut(s)	227, 572, 583, 625, 821
TaiI	ACGT	2 cut(s)	219, 950
TaqI	TCGA	4 cut(s)	92, 204, 531, 929
TasI	AATT	4 cut(s)	231, 350, 462, 777
TauI	GCSGC	3 cut(s)	150, 153, 156
TfiI	GAWTC	1 cut(s)	926
Tru1I	TTAA	4 cut(s)	26, 45, 363, 891
Tru9I	TTAA	4 cut(s)	26, 45, 363, 891
TscAI	CASTG	4 cut(s)	124, 577, 771, 921
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	5 cut(s)	387, 390, 638, 694, 731
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	2 cut(s)	429, 703
TspGWI	ACGGA	4 cut(s)	64, 339, 524, 542
TspRI	CASTG	4 cut(s)	124, 577, 771, 921
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	536, 849
XagI	CCTNNNNNAGG	1 cut(s)	94
XapI	RAATTY	2 cut(s)	231, 350
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	4 cut(s)	14, 96, 174, 558
Zsp2I	ATGCAT	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.