Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009265

Physical Location & Seq

Genomic Coordinates Reverse (-)

6475533 .. 6477549

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAGGCTAAAGACGGAAGGGAGTGATATTGTAGTCGAGGGTCCAAGATGCAGTCTCCGTACTAGAAAGGTTTACAGTGACCTGACTGTTGATTATTTGAAGATGTTGCTGCTGAATGTCCCTGCGACTGTTGTCGCACTTGCAGCGTTCTTCTTTTTGGATGATCTGACCGGTTTCGAAATCACATATCTTTTGGAGCTGCCGGAGCCATTCAGCTTCATTTTTACATGGTTTGCTGCTGTGCCTGTCATAGTTTACTTAGCTCAGGCACTGACAAAGCTAATTATCAAGGATGTTTTGATCCTGAAGGGCCCTTGTCCAAACTGTGGTACAGAGAACTTGTCATTCTTTGGGACTATACTTTCCATTTCAAATGGTGGTTCCACCAACAACATCAAATGCTCAAACTGCGGAACTCCACTGGTATATGATTCGAAGTCGCGCCTGATTACGTTGCCAGAAGGAAGCAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016730 GO:0019684 GO:0019904 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.31

Weight (kDa)

5.4

Isoelectric Point (pI)

25.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11960 AT4G11960 AT4G22890 AT4G22890 AT4G22890 AT4G22890 AT4G22890
fragaria_vesca	FvH4_5g01180 FvH4_5g01180
malus_domestica	MD04G1071000.v1.1
prunus_persica	Prupe.5G086900_v2.0.a1
pyrus_communis	pycom04g06420
rosa_chinensis	RchiOBHm_Chr7g0199911
rosa_laevigata	RLG00000003760
rosa_multiflora	Rmu_sc0002748.1_g000009
rosa_roxburghii	Rroxscaffold_3G00256380
rosa_rugosa	Rorug07G0057000
rosa_samantha	Rh7AG182400 Rh7BG185300 Rh7CG191900 Rh7DG185200
rosa_wichuraiana	Rw7G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccII	CGCG	1 cut(s)	442
AciI	CCGC	1 cut(s)	411
AclWI	GGATC	1 cut(s)	295
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	2 cut(s)	61, 331
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	100, 372
AluBI	AGCT	4 cut(s)	199, 216, 263, 280
AluI	AGCT	4 cut(s)	199, 216, 263, 280
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	310
ApaI	GGGCCC	1 cut(s)	314
ApeKI	GCWGC	4 cut(s)	109, 143, 199, 236
AsiGI	ACCGGT	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	3 cut(s)	41, 310, 311
AsuII	TTCGAA	2 cut(s)	177, 434
AvaII	GGWCC	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	314
BbvI	GCAGC	4 cut(s)	96, 155, 186, 223
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	4 cut(s)	110, 144, 200, 237
BlsI	GCNGC	4 cut(s)	111, 145, 201, 238
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	3 cut(s)	41, 310, 311
BmiI	GGNNCC	4 cut(s)	42, 207, 312, 382
BmsI	GCATC	1 cut(s)	38
BoxI	GACNNNNGTC	1 cut(s)	131
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu14I	TTCGAA	2 cut(s)	177, 434
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	426
Bse3DI	GCAATG	1 cut(s)	475
BseGI	GGATG	2 cut(s)	166, 298
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	426
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	4 cut(s)	96, 155, 186, 223
Bsh1236I	CGCG	1 cut(s)	442
BshFI	GGCC	1 cut(s)	312
BshTI	ACCGGT	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	171, 203
BslFI	GGGAC	2 cut(s)	104, 367
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	104, 367
BsnI	GGCC	1 cut(s)	312
Bsp119I	TTCGAA	2 cut(s)	177, 434
Bsp120I	GGGCCC	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	2 cut(s)	163, 300
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	442
BspLI	GGNNCC	4 cut(s)	42, 207, 312, 382
BspPI	GGATC	1 cut(s)	295
BspT104I	TTCGAA	2 cut(s)	177, 434
BsrDI	GCAATG	1 cut(s)	475
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	426
BssAI	RCCGGY	1 cut(s)	170
BssMI	GATC	2 cut(s)	163, 300
Bst4CI	ACNGT	4 cut(s)	77, 88, 130, 326
BstBI	TTCGAA	2 cut(s)	177, 434
BstDEI	CTNAG	2 cut(s)	259, 264
BstF5I	GGATG	2 cut(s)	166, 298
BstFNI	CGCG	1 cut(s)	442
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	2 cut(s)	166, 303
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	163, 300
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 205, 408
BstPAI	GACNNNNGTC	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	314
BstUI	CGCG	1 cut(s)	442
BstV1I	GCAGC	4 cut(s)	96, 155, 186, 223
BsuRI	GGCC	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	166, 298
BtsIMutI	CAGTG	3 cut(s)	82, 269, 419
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	1 cut(s)	444
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	41, 310, 311
Csp6I	GTAC	2 cut(s)	60, 330
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	2 cut(s)	228, 474
CviJI	RGCY	7 cut(s)	7, 199, 208, 216, 263, 280, 312
CviKI_1	RGCY	7 cut(s)	7, 199, 208, 216, 263, 280, 312
CviQI	GTAC	2 cut(s)	60, 330
DdeI	CTNAG	2 cut(s)	259, 264
DpnI	GATC	2 cut(s)	165, 302
DpnII	GATC	2 cut(s)	163, 300
Eco24I	GRGCYC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	326
EcoO109I	RGGNCCY	2 cut(s)	310, 311
EcoT22I	ATGCAT	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	314
FaeI	CATG	2 cut(s)	231, 477
FaiI	YATR	7 cut(s)	187, 229, 251, 359, 427, 429, 475
FaqI	GGGAC	2 cut(s)	104, 367
FatI	CATG	2 cut(s)	227, 473
Fnu4HI	GCNGC	4 cut(s)	110, 144, 200, 237
FokI	GGATG	2 cut(s)	173, 305
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	4 cut(s)	110, 144, 200, 237
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	4 cut(s)	110, 144, 200, 237
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	2 cut(s)	171, 203
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	231, 477
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	1 cut(s)	431
HpaII	CCGG	2 cut(s)	171, 203
Hpy166II	GTNNAC	2 cut(s)	73, 256
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	2 cut(s)	73, 256
HpyAV	CCTTC	3 cut(s)	11, 301, 455
HpyCH4III	ACNGT	4 cut(s)	77, 88, 130, 326
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	3 cut(s)	51, 143, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 205, 408
HpyF3I	CTNAG	2 cut(s)	259, 264
HpySE526I	ACGT	1 cut(s)	452
Hsp92II	CATG	2 cut(s)	231, 477
HspAI	GCGC	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	163, 300
LmnI	GCTCC	2 cut(s)	196, 205
Lsp1109I	GCAGC	4 cut(s)	96, 155, 186, 223
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	452
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	2 cut(s)	165, 302
MboI	GATC	2 cut(s)	163, 300
MboII	GAAGA	2 cut(s)	112, 142
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	1 cut(s)	282
MnlI	CCTC	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	475
MspI	CCGG	2 cut(s)	171, 203
MvnI	CGCG	1 cut(s)	442
MwoI	GCNNNNNNNGC	3 cut(s)	143, 205, 408
NdeII	GATC	2 cut(s)	163, 300
NlaIII	CATG	2 cut(s)	231, 477
NlaIV	GGNNCC	4 cut(s)	42, 207, 312, 382
NmuCI	GTSAC	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	475
NspV	TTCGAA	2 cut(s)	177, 434
PfeI	GAWTC	1 cut(s)	431
PflMI	CCANNNNNTGG	1 cut(s)	326
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	111, 145, 201, 238
PshAI	GACNNNNGTC	1 cut(s)	131
PspN4I	GGNNCC	4 cut(s)	42, 207, 312, 382
PspOMI	GGGCCC	1 cut(s)	310
PspPI	GGNCC	3 cut(s)	41, 310, 311
PstNI	CAGNNNCTG	1 cut(s)	271
RsaI	GTAC	2 cut(s)	61, 331
RsaNI	GTAC	2 cut(s)	60, 330
SatI	GCNGC	4 cut(s)	110, 144, 200, 237
Sau3AI	GATC	2 cut(s)	163, 300
Sau96I	GGNCC	3 cut(s)	41, 310, 311
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	7 cut(s)	72, 84, 201, 218, 265, 282, 455
SfaNI	GCATC	1 cut(s)	38
SfuI	TTCGAA	2 cut(s)	177, 434
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	1 cut(s)	282
SsiI	CCGC	1 cut(s)	411
SspMI	CTAG	1 cut(s)	63
TaaI	ACNGT	4 cut(s)	77, 88, 130, 326
TaiI	ACGT	1 cut(s)	455
TaqI	TCGA	3 cut(s)	36, 177, 434
TasI	AATT	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	431
TscAI	CASTG	3 cut(s)	82, 276, 426
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	4 cut(s)	109, 143, 199, 236
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	208
TspGWI	ACGGA	2 cut(s)	29, 47
TspRI	CASTG	3 cut(s)	82, 276, 426
Van91I	CCANNNNNTGG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	41
XspI	CTAG	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.