Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009265

Physical Location & Seq

Genomic Coordinates Forward (+)

12006986 .. 12009536

Gene Structure 2551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGTAGCAAGATGTTGTTTAGTTTGACAAGTCCTCGACTTTTCTCCGCCGTTTCTCGCAAACCTTCCTCTTCTTTCTCTCCTTCTCCTCCGTCGCCGTCTTCGAGGACTCAATGGACTCAGCTCAGCCCTGGAAAATCGATTTCTTTGAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCATCAACAAGGCTGAGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCTCCAAGCGTTGCAATCTTTCTATTATGATGGCAAAGCGATCATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTAATGTGGGAAGGAAGCAGTGTTGTGATGCTAAGTTCCGATGAACAAAGATTCTTGGAAGCTTCCATGGCTTATGTTTCTGGAAATCCAATCTTGAATGATGAAGAATATGATAAGCTCAAACTCAAACTAAAGATTGATGGTAGCGACATTGTGAGCGAGGGTCCAAGATGCAGTCTCCGTAGTAAAAAGGTGTATAGTGATCTCGCTGTAGATTATTTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGAGCTTCCAGAACCATACAGTTTCATATTCACTTGGTTCGCTGCTGTGCCTGTGATTGTATATCTGGCTTTATCAATCACCAAATTGATCATCAAGGACTTCTTGATCTTGAAGGGTCCTTGTCCGAATTGTGGAACGGAAAACACCTCCTTCTTTGGAACAATTCTGTCAATCTCCAGCGGCGGCAAAACCAACACTGTCAAATGCACCAACTGCGGAACCGCGATGGTGTATGACTCGGGTTCTAGGTTGATCACATTGCCAGAAGGAAGCCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016730 GO:0019684 GO:0019904 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

35.72

Weight (kDa)

5.2

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11960 AT4G11960 AT4G22890 AT4G22890 AT4G22890 AT4G22890 AT4G22890
fragaria_vesca	FvH4_5g01180 FvH4_5g01180
malus_domestica	MD04G1071000.v1.1
prunus_persica	Prupe.5G086900_v2.0.a1
pyrus_communis	pycom04g06420
rosa_chinensis	RchiOBHm_Chr7g0199911
rosa_laevigata	RLG00000003760
rosa_multiflora	Rmu_sc0002748.1_g000009
rosa_roxburghii	Rroxscaffold_3G00256380
rosa_rugosa	Rorug07G0057000
rosa_samantha	Rh7AG182400 Rh7BG185300 Rh7CG191900 Rh7DG185200
rosa_wichuraiana	Rw7G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	917
AciI	CCGC	5 cut(s)	48, 873, 876, 909, 915
AfiI	CCNNNNNNNGG	2 cut(s)	209, 824
AgsI	TTSAA	4 cut(s)	472, 598, 613, 805
AjnI	CCWGG	2 cut(s)	130, 654
AluBI	AGCT	5 cut(s)	124, 437, 493, 697, 971
AluI	AGCT	5 cut(s)	124, 437, 493, 697, 971
Alw26I	GTCTC	2 cut(s)	207, 557
Ama87I	CYCGRG	1 cut(s)	931
ApeKI	GCWGC	1 cut(s)	734
AspS9I	GGNCC	3 cut(s)	200, 539, 809
AsuHPI	GGTGA	2 cut(s)	290, 763
AvaI	CYCGRG	1 cut(s)	931
AvaII	GGWCC	3 cut(s)	200, 539, 809
BbsI	GAAGAC	2 cut(s)	93, 154
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	3 cut(s)	320, 509, 913
BceAI	ACGGC	2 cut(s)	35, 82
BciT130I	CCWGG	2 cut(s)	132, 656
BclI	TGATCA	2 cut(s)	780, 945
BcoDI	GTCTC	2 cut(s)	207, 557
BfaI	CTAG	1 cut(s)	939
BfmI	CTRYAG	1 cut(s)	585
BisI	GCNGC	3 cut(s)	735, 874, 877
BlpI	GCTNAGC	1 cut(s)	125
BlsI	GCNGC	3 cut(s)	736, 875, 878
Bme1390I	CCNGG	2 cut(s)	132, 656
Bme18I	GGWCC	3 cut(s)	200, 539, 809
BmeT110I	CYCGRG	1 cut(s)	931
BmgT120I	GGNCC	3 cut(s)	200, 539, 809
BmiI	GGNNCC	3 cut(s)	540, 810, 913
BmrFI	CCNGG	2 cut(s)	132, 656
BmsI	GCATC	3 cut(s)	258, 393, 536
BpiI	GAAGAC	2 cut(s)	93, 154
BpmI	CTGGAG	1 cut(s)	853
Bpu1102I	GCTNAGC	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	130, 441
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 824
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	2 cut(s)	235, 950
BseBI	CCWGG	2 cut(s)	132, 656
BseCI	ATCGAT	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	130, 441
BseLI	CCNNNNNNNGG	2 cut(s)	209, 824
BseMI	GCAATG	2 cut(s)	235, 950
BseMII	CTCAG	3 cut(s)	134, 139, 252
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	78, 225
BseXI	GCAGC	1 cut(s)	721
Bsh1236I	CGCG	1 cut(s)	917
BshVI	ATCGAT	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	931
BslI	CCNNNNNNNGG	2 cut(s)	209, 824
BsmAI	GTCTC	2 cut(s)	207, 557
BsoBI	CYCGRG	1 cut(s)	931
Bsp143I	GATC	6 cut(s)	336, 577, 678, 780, 798, 945
Bsp1720I	GCTNAGC	1 cut(s)	125
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	5 cut(s)	48, 873, 876, 909, 915
BspCNI	CTCAG	3 cut(s)	133, 138, 253
BspDI	ATCGAT	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	917
BspLI	GGNNCC	3 cut(s)	540, 810, 913
BsrDI	GCAATG	2 cut(s)	235, 950
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	130, 441
BssMI	GATC	6 cut(s)	336, 577, 678, 780, 798, 945
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	132, 656
Bst4CI	ACNGT	3 cut(s)	628, 713, 892
Bst6I	CTCTTC	4 cut(s)	76, 151, 345, 366
BstAPI	GCANNNNNTGC	1 cut(s)	906
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	4 cut(s)	120, 125, 261, 407
BstDSI	CCRYGG	1 cut(s)	441
BstFNI	CGCG	1 cut(s)	917
BstKTI	GATC	6 cut(s)	339, 580, 681, 783, 801, 948
BstMAI	GTCTC	2 cut(s)	207, 557
BstMBI	GATC	6 cut(s)	336, 577, 678, 780, 798, 945
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 906
BstNI	CCWGG	2 cut(s)	132, 656
BstSCI	CCNGG	2 cut(s)	130, 654
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	917
BstV1I	GCAGC	1 cut(s)	721
BstV2I	GAAGAC	2 cut(s)	93, 154
Bsu15I	ATCGAT	1 cut(s)	140
BsuTUI	ATCGAT	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	932
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	400, 888
Cac8I	GCNNGC	1 cut(s)	174
Cfr13I	GGNCC	3 cut(s)	200, 539, 809
ClaI	ATCGAT	1 cut(s)	140
CviAII	CATG	3 cut(s)	340, 442, 691
DdeI	CTNAG	4 cut(s)	120, 125, 261, 407
DpnI	GATC	6 cut(s)	338, 579, 680, 782, 800, 947
DpnII	GATC	6 cut(s)	336, 577, 678, 780, 798, 945
Eam1104I	CTCTTC	4 cut(s)	76, 151, 345, 366
EarI	CTCTTC	4 cut(s)	76, 151, 345, 366
EciI	GGCGGA	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	200, 539, 809
Eco88I	CYCGRG	1 cut(s)	931
EcoO109I	RGGNCCY	1 cut(s)	809
EcoRII	CCWGG	2 cut(s)	130, 654
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	3 cut(s)	343, 445, 694
FalI	AAGNNNNNCTT	3 cut(s)	779, 811, 955
FatI	CATG	3 cut(s)	339, 441, 690
FbaI	TGATCA	2 cut(s)	780, 945
Fnu4HI	GCNGC	3 cut(s)	735, 874, 877
Fsp4HI	GCNGC	3 cut(s)	735, 874, 877
FspBI	CTAG	1 cut(s)	939
GluI	GCNGC	3 cut(s)	735, 874, 877
GsuI	CTGGAG	1 cut(s)	853
Hin1II	CATG	3 cut(s)	343, 445, 694
HindIII	AAGCTT	2 cut(s)	435, 969
HinfI	GANTC	6 cut(s)	109, 118, 159, 426, 642, 929
HphI	GGTGA	2 cut(s)	290, 763
Hpy188I	TCNGA	3 cut(s)	415, 641, 819
Hpy188III	TCNNGA	5 cut(s)	456, 469, 701, 796, 802
Hpy99I	CGWCG	2 cut(s)	97, 224
HpyAV	CCTTC	6 cut(s)	75, 93, 380, 799, 853, 953
HpyCH4III	ACNGT	3 cut(s)	628, 713, 892
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	310, 549, 900
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 906
HpyF3I	CTNAG	4 cut(s)	120, 125, 261, 407
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	343, 445, 694
Ksp22I	TGATCA	2 cut(s)	780, 945
Kzo9I	GATC	6 cut(s)	336, 577, 678, 780, 798, 945
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	3 cut(s)	258, 393, 536
MaeI	CTAG	1 cut(s)	939
MaeII	ACGT	1 cut(s)	219
MalI	GATC	6 cut(s)	338, 579, 680, 782, 800, 947
MboI	GATC	6 cut(s)	336, 577, 678, 780, 798, 945
MfeI	CAATTG	1 cut(s)	273
MluCI	AATT	4 cut(s)	273, 776, 820, 855
MlyI	GAGTC	5 cut(s)	103, 112, 168, 636, 923
MnlI	CCTC	7 cut(s)	45, 79, 99, 99, 203, 529, 850
MseI	TTAA	3 cut(s)	366, 377, 973
MspA1I	CMGCKG	1 cut(s)	873
MspR9I	CCNGG	2 cut(s)	132, 656
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	132, 656
MvnI	CGCG	1 cut(s)	917
MwoI	GCNNNNNNNGC	2 cut(s)	443, 906
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	6 cut(s)	336, 577, 678, 780, 798, 945
NlaIII	CATG	3 cut(s)	343, 445, 694
NlaIV	GGNNCC	3 cut(s)	540, 810, 913
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	426
PflFI	GACNNNGTC	1 cut(s)	218
PfoI	TCCNGGA	1 cut(s)	654
PkrI	GCNGC	3 cut(s)	736, 875, 878
PleI	GAGTC	5 cut(s)	103, 112, 167, 636, 923
PpsI	GAGTC	5 cut(s)	103, 112, 167, 636, 923
PpuMI	RGGWCCY	1 cut(s)	809
Psp5II	RGGWCCY	1 cut(s)	809
Psp6I	CCWGG	2 cut(s)	130, 654
PspGI	CCWGG	2 cut(s)	130, 654
PspN4I	GGNNCC	3 cut(s)	540, 810, 913
PspPI	GGNCC	3 cut(s)	200, 539, 809
PspPPI	RGGWCCY	1 cut(s)	809
PsyI	GACNNNGTC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	366, 377, 973
SatI	GCNGC	3 cut(s)	735, 874, 877
Sau3AI	GATC	6 cut(s)	336, 577, 678, 780, 798, 945
Sau96I	GGNCC	3 cut(s)	200, 539, 809
SchI	GAGTC	5 cut(s)	103, 112, 168, 636, 923
ScrFI	CCNGG	2 cut(s)	132, 656
SfaNI	GCATC	3 cut(s)	258, 393, 536
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	3 cut(s)	200, 539, 809
Sse9I	AATT	4 cut(s)	273, 776, 820, 855
SsiI	CCGC	5 cut(s)	48, 873, 876, 909, 915
SspMI	CTAG	1 cut(s)	939
StyD4I	CCNGG	2 cut(s)	130, 654
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	3 cut(s)	628, 713, 892
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	4 cut(s)	37, 104, 140, 222
TasI	AATT	4 cut(s)	273, 776, 820, 855
TauI	GCSGC	2 cut(s)	876, 879
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	3 cut(s)	366, 377, 973
Tru9I	TTAA	3 cut(s)	366, 377, 973
TscAI	CASTG	2 cut(s)	400, 895
TseI	GCWGC	1 cut(s)	734
TspDTI	ATGAA	4 cut(s)	363, 432, 492, 706
TspGWI	ACGGA	3 cut(s)	81, 545, 845
TspRI	CASTG	2 cut(s)	400, 895
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	3 cut(s)	200, 539, 809
XspI	CTAG	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.