Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0009265

Physical Location & Seq

Genomic Coordinates Reverse (-)

16212707 .. 16216842

Gene Structure 4136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG182400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTATTTATTATTTGAGTTTTTTAGCTTTGAAATTTCTCGAGTTGATTCTCATGTATTCTTTTCAGGAAATGAGGACCTTGTTGATAGTAAGATCCTGCCATATTGTAGCATAGACAAGAAAGAGAAGAAGTCATTGGGAGAACTTGAACAAGACTTTCTGCAAGCTCTACAATCATTTTATTATGATGGAAAAGCTATTATGTCAAATGAGGAATTTGATAATCTCAAGGAAGAGCTAATGTGGGAAGGCAGCAGTGTTGTCATGCTAAGTTCTGATGAACAAAAGTTTCTGGAAGCTTCAATGGCCTACGTCTCTGGGAAACCAATTTTGAGCGACCAAGAGTATGATGATTTGAAGTTAAGACTAAAGTCGCAAGGGAGTGATATTGTCGTCCTGGGTCCCAGATGCAGTCTCCGTACTAGAAAGGTTTACAGTGACCTGAGTGTTGACTATTTGAAGATGCTCCTGCTGAATGTCCCAGCAACCATTGTTGCCTTAGGAGCGTTTTTCTTCTTGGATGATCTGACTGGTTTCGAAATTACATATCTTTTGGAGCTCCCAGAACCGTTCAGCTTCATTTTCACATGGTTTGCTGCTGTGCCAGTCATAGTTTATCTAGCTACACAACTCACCAAACTTATTGTGAAGGATGTCTTGATCTTAAAGGGCCCTTGTCCAAACTGTGGTACAGAGAATCAGTCATTCTTTGGGTCGATACTATCGATTTCGAATGGTGGTTCTACCAACAACCTTAAGTGCTCAAACTGTGGAACTCCGTTGGTATATGATAAGACTACGCGCTTGATTACCTTGCCAGAAGGAAGCAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016730 GO:0019684 GO:0019904 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

31.22

Weight (kDa)

4.59

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11960 AT4G11960 AT4G22890 AT4G22890 AT4G22890 AT4G22890 AT4G22890
fragaria_vesca	FvH4_5g01180 FvH4_5g01180
malus_domestica	MD04G1071000.v1.1
prunus_persica	Prupe.5G086900_v2.0.a1
pyrus_communis	pycom04g06420
rosa_chinensis	RchiOBHm_Chr7g0199911
rosa_laevigata	RLG00000003760
rosa_multiflora	Rmu_sc0002748.1_g000009
rosa_roxburghii	Rroxscaffold_3G00256380
rosa_rugosa	Rorug07G0057000
rosa_samantha	Rh7AG182400 Rh7BG185300 Rh7CG191900 Rh7DG185200
rosa_wichuraiana	Rw7G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	686
AccII	CGCG	1 cut(s)	802
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	33, 215
AfaI	GTAC	2 cut(s)	421, 691
AfiI	CCNNNNNNNGG	1 cut(s)	686
AflII	CTTAAG	1 cut(s)	755
AgsI	TTSAA	5 cut(s)	32, 149, 303, 358, 460
AjnI	CCWGG	1 cut(s)	396
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	8 cut(s)	27, 167, 197, 238, 299, 559, 576, 623
AluI	AGCT	8 cut(s)	27, 167, 197, 238, 299, 559, 576, 623
Alw21I	GWGCWC	2 cut(s)	561, 764
Alw26I	GTCTC	2 cut(s)	319, 419
AlwI	GGATC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	2 cut(s)	306, 670
ApaI	GGGCCC	1 cut(s)	674
ApeKI	GCWGC	2 cut(s)	252, 596
ApoI	RAATTY	2 cut(s)	33, 215
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	4 cut(s)	76, 401, 670, 671
AsuHPI	GGTGA	1 cut(s)	625
AsuII	TTCGAA	2 cut(s)	537, 731
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	76, 401
AxyI	CCTNAGG	1 cut(s)	499
BaeGI	GKGCMC	1 cut(s)	674
BanII	GRGCYC	2 cut(s)	561, 674
Bbv12I	GWGCWC	2 cut(s)	561, 764
BbvI	GCAGC	2 cut(s)	264, 583
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	319, 419
BfaI	CTAG	2 cut(s)	423, 620
BfrI	CTTAAG	1 cut(s)	755
BisI	GCNGC	2 cut(s)	253, 597
BlsI	GCNGC	2 cut(s)	254, 598
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	2 cut(s)	76, 401
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	4 cut(s)	76, 401, 670, 671
BmiI	GGNNCC	3 cut(s)	402, 403, 672
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	2 cut(s)	398, 453
BoxI	GACNNNNGTC	1 cut(s)	370
Bpu14I	TTCGAA	2 cut(s)	537, 731
BpuEI	CTTGAG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	725
BsaJI	CCNNGG	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	1 cut(s)	686
Bse1I	ACTGG	2 cut(s)	535, 605
Bse21I	CCTNAGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	835
BseBI	CCWGG	1 cut(s)	398
BseCI	ATCGAT	1 cut(s)	725
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	2 cut(s)	526, 658
BseLI	CCNNNNNNNGG	1 cut(s)	686
BseMI	GCAATG	1 cut(s)	835
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	2 cut(s)	535, 605
BseSI	GKGCMC	1 cut(s)	674
BseXI	GCAGC	2 cut(s)	264, 583
BseYI	CCCAGC	1 cut(s)	481
Bsh1236I	CGCG	1 cut(s)	802
BshFI	GGCC	2 cut(s)	308, 672
BshVI	ATCGAT	1 cut(s)	725
BsiHKAI	GWGCWC	2 cut(s)	561, 764
BsiHKCI	CYCGRG	1 cut(s)	39
BslFI	GGGAC	2 cut(s)	387, 464
BslI	CCNNNNNNNGG	1 cut(s)	686
BsmAI	GTCTC	2 cut(s)	319, 419
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	2 cut(s)	387, 464
BsnI	GGCC	2 cut(s)	308, 672
BsoBI	CYCGRG	1 cut(s)	39
Bsp119I	TTCGAA	2 cut(s)	537, 731
Bsp120I	GGGCCC	1 cut(s)	670
Bsp1286I	GDGCHC	3 cut(s)	561, 674, 764
Bsp143I	GATC	3 cut(s)	93, 523, 660
BspANI	GGCC	2 cut(s)	308, 672
BspCNI	CTCAG	1 cut(s)	435
BspDI	ATCGAT	1 cut(s)	725
BspFNI	CGCG	1 cut(s)	802
BspLI	GGNNCC	3 cut(s)	402, 403, 672
BspPI	GGATC	1 cut(s)	88
BspQI	GCTCTTC	1 cut(s)	228
BspT104I	TTCGAA	2 cut(s)	537, 731
BspTI	CTTAAG	1 cut(s)	755
BsrDI	GCAATG	1 cut(s)	835
BsrI	ACTGG	2 cut(s)	535, 605
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	3 cut(s)	93, 523, 660
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	4 cut(s)	437, 570, 686, 770
Bst6I	CTCTTC	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	755
BstBI	TTCGAA	2 cut(s)	537, 731
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	4 cut(s)	269, 443, 499, 834
BstF5I	GGATG	2 cut(s)	526, 658
BstFNI	CGCG	1 cut(s)	802
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	3 cut(s)	96, 526, 663
BstMAI	GTCTC	2 cut(s)	319, 419
BstMBI	GATC	3 cut(s)	93, 523, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 503
BstNI	CCWGG	1 cut(s)	398
BstPAI	GACNNNNGTC	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	396
BstSLI	GKGCMC	1 cut(s)	674
BstUI	CGCG	1 cut(s)	802
BstV1I	GCAGC	2 cut(s)	264, 583
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
Bsu15I	ATCGAT	1 cut(s)	725
Bsu36I	CCTNAGG	1 cut(s)	499
BsuRI	GGCC	2 cut(s)	308, 672
BsuTUI	ATCGAT	1 cut(s)	725
BtsCI	GGATG	2 cut(s)	526, 658
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 442
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	804
Cfr13I	GGNCC	4 cut(s)	76, 401, 670, 671
ClaI	ATCGAT	1 cut(s)	725
Csp6I	GTAC	2 cut(s)	420, 690
CviAII	CATG	3 cut(s)	53, 265, 588
CviQI	GTAC	2 cut(s)	420, 690
DdeI	CTNAG	4 cut(s)	269, 443, 499, 834
DpnI	GATC	3 cut(s)	95, 525, 662
DpnII	GATC	3 cut(s)	93, 523, 660
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	559
Eco24I	GRGCYC	2 cut(s)	561, 674
Eco47I	GGWCC	2 cut(s)	76, 401
Eco53kI	GAGCTC	1 cut(s)	559
Eco81I	CCTNAGG	1 cut(s)	499
Eco88I	CYCGRG	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	559
EcoO109I	RGGNCCY	4 cut(s)	76, 401, 670, 671
EcoRII	CCWGG	1 cut(s)	396
EcoT38I	GRGCYC	2 cut(s)	561, 674
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	3 cut(s)	56, 268, 591
FalI	AAGNNNNNCTT	3 cut(s)	641, 673, 817
FaqI	GGGAC	2 cut(s)	387, 464
FatI	CATG	3 cut(s)	52, 264, 587
Fnu4HI	GCNGC	2 cut(s)	253, 597
FokI	GGATG	2 cut(s)	533, 665
FriOI	GRGCYC	2 cut(s)	561, 674
Fsp4HI	GCNGC	2 cut(s)	253, 597
FspBI	CTAG	2 cut(s)	423, 620
GlaI	GCGC	1 cut(s)	803
GluI	GCNGC	2 cut(s)	253, 597
GsaI	CCCAGC	1 cut(s)	485
HaeIII	GGCC	2 cut(s)	308, 672
HhaI	GCGC	1 cut(s)	804
Hin1II	CATG	3 cut(s)	56, 268, 591
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	2 cut(s)	47, 697
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	433, 451
Hpy188I	TCNGA	2 cut(s)	277, 528
Hpy188III	TCNNGA	4 cut(s)	39, 66, 293, 658
Hpy8I	GTNNAC	2 cut(s)	433, 451
HpyAV	CCTTC	3 cut(s)	242, 643, 815
HpyCH4III	ACNGT	4 cut(s)	437, 570, 686, 770
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	2 cut(s)	163, 411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 503
HpyF3I	CTNAG	4 cut(s)	269, 443, 499, 834
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	56, 268, 591
HspAI	GCGC	1 cut(s)	802
KflI	GGGWCCC	1 cut(s)	401
Kzo9I	GATC	3 cut(s)	93, 523, 660
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	4 cut(s)	471, 503, 556, 564
Lsp1109I	GCAGC	2 cut(s)	264, 583
LweI	GCATC	2 cut(s)	398, 453
MaeI	CTAG	2 cut(s)	423, 620
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	3 cut(s)	95, 525, 662
MboI	GATC	3 cut(s)	93, 523, 660
MboII	GAAGA	4 cut(s)	139, 245, 472, 505
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	3 cut(s)	561, 674, 764
MluCI	AATT	4 cut(s)	33, 215, 327, 540
MnlI	CCTC	2 cut(s)	67, 205
MseI	TTAA	3 cut(s)	362, 665, 756
MspCI	CTTAAG	1 cut(s)	755
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	802
MwoI	GCNNNNNNNGC	2 cut(s)	305, 503
NdeII	GATC	3 cut(s)	93, 523, 660
NlaIII	CATG	3 cut(s)	56, 268, 591
NlaIV	GGNNCC	3 cut(s)	402, 403, 672
NmuCI	GTSAC	1 cut(s)	437
NspV	TTCGAA	2 cut(s)	537, 731
PaeR7I	CTCGAG	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	722
PfeI	GAWTC	2 cut(s)	47, 697
PflMI	CCANNNNNTGG	1 cut(s)	686
PkrI	GCNGC	2 cut(s)	254, 598
PpuMI	RGGWCCY	2 cut(s)	76, 401
PshAI	GACNNNNGTC	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	561
Psp5II	RGGWCCY	2 cut(s)	76, 401
Psp6I	CCWGG	1 cut(s)	396
PspFI	CCCAGC	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	402, 403, 672
PspOMI	GGGCCC	1 cut(s)	670
PspPI	GGNCC	4 cut(s)	76, 401, 670, 671
PspPPI	RGGWCCY	2 cut(s)	76, 401
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	2 cut(s)	421, 691
RsaNI	GTAC	2 cut(s)	420, 690
SacI	GAGCTC	1 cut(s)	561
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	362, 665, 756
SatI	GCNGC	2 cut(s)	253, 597
Sau3AI	GATC	3 cut(s)	93, 523, 660
Sau96I	GGNCC	4 cut(s)	76, 401, 670, 671
ScrFI	CCNGG	1 cut(s)	398
SduI	GDGCHC	3 cut(s)	561, 674, 764
SfaNI	GCATC	2 cut(s)	398, 453
Sfr274I	CTCGAG	1 cut(s)	39
SfuI	TTCGAA	2 cut(s)	537, 731
SinI	GGWCC	2 cut(s)	76, 401
SlaI	CTCGAG	1 cut(s)	39
SmlI	CTYRAG	3 cut(s)	39, 227, 755
SmoI	CTYRAG	3 cut(s)	39, 227, 755
Sse9I	AATT	4 cut(s)	33, 215, 327, 540
SspMI	CTAG	2 cut(s)	423, 620
SstI	GAGCTC	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	396
TaaI	ACNGT	4 cut(s)	437, 570, 686, 770
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	5 cut(s)	40, 537, 716, 725, 731
TasI	AATT	4 cut(s)	33, 215, 327, 540
TfiI	GAWTC	2 cut(s)	47, 697
Tru1I	TTAA	3 cut(s)	362, 665, 756
Tru9I	TTAA	3 cut(s)	362, 665, 756
TscAI	CASTG	2 cut(s)	262, 442
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	2 cut(s)	252, 596
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	2 cut(s)	294, 568
TspGWI	ACGGA	2 cut(s)	407, 768
TspRI	CASTG	2 cut(s)	262, 442
Van91I	CCANNNNNTGG	1 cut(s)	686
Vha464I	CTTAAG	1 cut(s)	755
VpaK11BI	GGWCC	2 cut(s)	76, 401
XapI	RAATTY	2 cut(s)	33, 215
XhoI	CTCGAG	1 cut(s)	39
XspI	CTAG	2 cut(s)	423, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.