Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009265

Physical Location & Seq

Genomic Coordinates Reverse (-)

17232158 .. 17236037

Gene Structure 3880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG185200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTGGGGCTCATATGTGGATAGATCATAGATGGGCTAGTGGCATTGTAGGTTCAGACCTTATAAAAAAAAAAATCTGGATTAATGAGAAAGCCCGCGTGTCTGATCATGTGGTTTTTCAAATGTATTTATTATTTGAGTTTTTTAGCTTTGAAATTTCTCGAGTTGATTCTCATGTTTTCTTTTCAGGAAATGAGGACGTTGTTGATAGTAAGATCCTGCCATATTGTAACATAGACAAGAAAGGGAAGAAGTCATTGGGAGAACTTGAACAAGACTTTCTTCAAGCTCTACAATCATTTTATTATGATGGAAAAGCTATTATGTCAAATGAGGAATTTGATAATCTCAAGGAAGAGCTAATGTGGGAAGGCAGCAGTGTTGTCATGCTAAGTTCTGATGAACAAAAGTTTCTGGAAGCTTCAATGGCCTACGTCTCTGGGAAACCAATTTTGAGCGACCAAGAGTATGATGATTTGAAGTTAAGACTAAAGTCGCAAGGGAGTGATATTGTCGTCCTGGGTCCCAGATGCAGTCTCCGTACTAGAAAGGTTTACAGTGACCTGACTGTTGACTATTTGAAGATGCTCCTGCTGAATGTCCCAGCAACCATTGTTGCCTTAGGAGCGTTTTTCTTCTTGGATGATCTGACTGGTTTCGAAATTACATATCTTTTGGAGCTTCCAGAACCGTTCAGCTTCATTTTCACATGGTTTGCTGCCGTGCCAGTCATAGTTTATCTAGCTACGCAACTCACCAAACTTATTGTGAAGGATGTCTTGATCTTAAAGGGCCCTTGTCCAAACTGTGGTACAGAGAATCAGTCATTCTTTGGGTCGATCCTATCGATTTCGAATGGTGGTTCTACCAACAACCTTAAGTGCTCAAACTGTGGAACTCCGTTGGTATATGATAAGACTACGCGCTTGATTACCTTGCCAGAAGGAAGCAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016730 GO:0019684 GO:0019904 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

35.89

Weight (kDa)

5.0

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11960 AT4G11960 AT4G22890 AT4G22890 AT4G22890 AT4G22890 AT4G22890
fragaria_vesca	FvH4_5g01180 FvH4_5g01180
malus_domestica	MD04G1071000.v1.1
prunus_persica	Prupe.5G086900_v2.0.a1
pyrus_communis	pycom04g06420
rosa_chinensis	RchiOBHm_Chr7g0199911
rosa_laevigata	RLG00000003760
rosa_multiflora	Rmu_sc0002748.1_g000009
rosa_roxburghii	Rroxscaffold_3G00256380
rosa_rugosa	Rorug07G0057000
rosa_samantha	Rh7AG182400 Rh7BG185300 Rh7CG191900 Rh7DG185200
rosa_wichuraiana	Rw7G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	65
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccII	CGCG	2 cut(s)	99, 925
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	2 cut(s)	211, 835
AcsI	RAATTY	2 cut(s)	156, 338
AfaI	GTAC	2 cut(s)	544, 814
AfiI	CCNNNNNNNGG	1 cut(s)	809
AflII	CTTAAG	1 cut(s)	878
AgsI	TTSAA	7 cut(s)	122, 155, 272, 287, 426, 481, 583
AjnI	CCWGG	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	8 cut(s)	150, 290, 320, 361, 422, 682, 699, 746
AluI	AGCT	8 cut(s)	150, 290, 320, 361, 422, 682, 699, 746
Alw21I	GWGCWC	1 cut(s)	887
Alw26I	GTCTC	2 cut(s)	442, 542
AlwI	GGATC	2 cut(s)	211, 835
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	2 cut(s)	429, 793
ApaI	GGGCCC	1 cut(s)	797
ApeKI	GCWGC	2 cut(s)	375, 719
ApoI	RAATTY	2 cut(s)	156, 338
AseI	ATTAAT	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	927
AspS9I	GGNCC	3 cut(s)	524, 793, 794
AsuHPI	GGTGA	1 cut(s)	748
AsuII	TTCGAA	2 cut(s)	660, 854
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	524
AxyI	CCTNAGG	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	797
BanII	GRGCYC	2 cut(s)	13, 797
Bbv12I	GWGCWC	1 cut(s)	887
BbvI	GCAGC	2 cut(s)	387, 706
BccI	CCATC	2 cut(s)	27, 305
BceAI	ACGGC	1 cut(s)	707
BciT130I	CCWGG	1 cut(s)	521
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	442, 542
BfaI	CTAG	3 cut(s)	39, 546, 743
BfrI	CTTAAG	1 cut(s)	878
BisI	GCNGC	2 cut(s)	376, 720
BlsI	GCNGC	2 cut(s)	377, 721
Bme1390I	CCNGG	1 cut(s)	521
Bme18I	GGWCC	1 cut(s)	524
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	3 cut(s)	524, 793, 794
BmiI	GGNNCC	3 cut(s)	525, 526, 795
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	2 cut(s)	521, 576
BoxI	GACNNNNGTC	1 cut(s)	493
Bpu14I	TTCGAA	2 cut(s)	660, 854
BpuEI	CTTGAG	1 cut(s)	335
Bsa29I	ATCGAT	1 cut(s)	848
BsaJI	CCNNGG	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	809
Bse1I	ACTGG	2 cut(s)	658, 728
Bse21I	CCTNAGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	958
BseBI	CCWGG	1 cut(s)	521
BseCI	ATCGAT	1 cut(s)	848
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	2 cut(s)	649, 781
BseLI	CCNNNNNNNGG	1 cut(s)	809
BseMI	GCAATG	1 cut(s)	958
BseNI	ACTGG	2 cut(s)	658, 728
BseSI	GKGCMC	1 cut(s)	797
BseXI	GCAGC	2 cut(s)	387, 706
BseYI	CCCAGC	2 cut(s)	5, 604
Bsh1236I	CGCG	2 cut(s)	99, 925
BshFI	GGCC	2 cut(s)	431, 795
BshVI	ATCGAT	1 cut(s)	848
BsiHKAI	GWGCWC	1 cut(s)	887
BsiHKCI	CYCGRG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	510, 587
BslI	CCNNNNNNNGG	1 cut(s)	809
BsmAI	GTCTC	2 cut(s)	442, 542
BsmBI	CGTCTC	1 cut(s)	442
BsmFI	GGGAC	2 cut(s)	510, 587
BsnI	GGCC	2 cut(s)	431, 795
BsoBI	CYCGRG	1 cut(s)	162
Bsp119I	TTCGAA	2 cut(s)	660, 854
Bsp120I	GGGCCC	1 cut(s)	793
Bsp1286I	GDGCHC	3 cut(s)	13, 797, 887
Bsp143I	GATC	6 cut(s)	25, 106, 216, 646, 783, 840
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	2 cut(s)	431, 795
BspDI	ATCGAT	1 cut(s)	848
BspFNI	CGCG	2 cut(s)	99, 925
BspLI	GGNNCC	3 cut(s)	525, 526, 795
BspPI	GGATC	2 cut(s)	211, 835
BspQI	GCTCTTC	1 cut(s)	351
BspT104I	TTCGAA	2 cut(s)	660, 854
BspTI	CTTAAG	1 cut(s)	878
BsrDI	GCAATG	1 cut(s)	958
BsrI	ACTGG	2 cut(s)	658, 728
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	6 cut(s)	25, 106, 216, 646, 783, 840
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	5 cut(s)	560, 571, 693, 809, 893
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	878
BstBI	TTCGAA	2 cut(s)	660, 854
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	3 cut(s)	392, 622, 957
BstF5I	GGATG	2 cut(s)	649, 781
BstFNI	CGCG	2 cut(s)	99, 925
BstHHI	GCGC	1 cut(s)	927
BstKTI	GATC	6 cut(s)	28, 109, 219, 649, 786, 843
BstMAI	GTCTC	2 cut(s)	442, 542
BstMBI	GATC	6 cut(s)	25, 106, 216, 646, 783, 840
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 626
BstNI	CCWGG	1 cut(s)	521
BstPAI	GACNNNNGTC	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	797
BstUI	CGCG	2 cut(s)	99, 925
BstV1I	GCAGC	2 cut(s)	387, 706
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
Bsu15I	ATCGAT	1 cut(s)	848
Bsu36I	CCTNAGG	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	431, 795
BsuTUI	ATCGAT	1 cut(s)	848
BtsCI	GGATG	2 cut(s)	649, 781
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	385, 565
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	1 cut(s)	927
Cfr13I	GGNCC	3 cut(s)	524, 793, 794
ClaI	ATCGAT	1 cut(s)	848
Csp6I	GTAC	2 cut(s)	543, 813
CviAII	CATG	4 cut(s)	110, 176, 388, 711
CviQI	GTAC	2 cut(s)	543, 813
DdeI	CTNAG	3 cut(s)	392, 622, 957
DpnI	GATC	6 cut(s)	27, 108, 218, 648, 785, 842
DpnII	GATC	6 cut(s)	25, 106, 216, 646, 783, 840
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco24I	GRGCYC	2 cut(s)	13, 797
Eco47I	GGWCC	1 cut(s)	524
Eco81I	CCTNAGG	1 cut(s)	622
Eco88I	CYCGRG	1 cut(s)	162
EcoO109I	RGGNCCY	3 cut(s)	524, 793, 794
EcoRII	CCWGG	1 cut(s)	519
EcoT38I	GRGCYC	2 cut(s)	13, 797
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	4 cut(s)	113, 179, 391, 714
FalI	AAGNNNNNCTT	5 cut(s)	267, 299, 764, 796, 940
FaqI	GGGAC	2 cut(s)	510, 587
FatI	CATG	4 cut(s)	109, 175, 387, 710
FauI	CCCGC	1 cut(s)	104
FauNDI	CATATG	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	376, 720
FokI	GGATG	2 cut(s)	656, 788
FriOI	GRGCYC	2 cut(s)	13, 797
Fsp4HI	GCNGC	2 cut(s)	376, 720
FspBI	CTAG	3 cut(s)	39, 546, 743
GlaI	GCGC	1 cut(s)	926
GluI	GCNGC	2 cut(s)	376, 720
GsaI	CCCAGC	2 cut(s)	9, 608
HaeIII	GGCC	2 cut(s)	431, 795
HhaI	GCGC	1 cut(s)	927
Hin1II	CATG	4 cut(s)	113, 179, 391, 714
Hin6I	GCGC	1 cut(s)	925
HinP1I	GCGC	1 cut(s)	925
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	2 cut(s)	170, 820
HphI	GGTGA	1 cut(s)	748
Hpy166II	GTNNAC	2 cut(s)	556, 574
Hpy188I	TCNGA	4 cut(s)	58, 106, 400, 651
Hpy188III	TCNNGA	6 cut(s)	79, 162, 189, 416, 686, 781
Hpy8I	GTNNAC	2 cut(s)	556, 574
HpyAV	CCTTC	3 cut(s)	365, 766, 938
HpyCH4III	ACNGT	5 cut(s)	560, 571, 693, 809, 893
HpyCH4IV	ACGT	2 cut(s)	201, 435
HpyCH4V	TGCA	1 cut(s)	534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 626
HpyF3I	CTNAG	3 cut(s)	392, 622, 957
HpySE526I	ACGT	2 cut(s)	201, 435
Hsp92II	CATG	4 cut(s)	113, 179, 391, 714
HspAI	GCGC	1 cut(s)	925
KflI	GGGWCCC	1 cut(s)	524
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	6 cut(s)	25, 106, 216, 646, 783, 840
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	3 cut(s)	594, 626, 679
Lsp1109I	GCAGC	2 cut(s)	387, 706
LweI	GCATC	2 cut(s)	521, 576
MaeI	CTAG	3 cut(s)	39, 546, 743
MaeII	ACGT	2 cut(s)	201, 435
MaeIII	GTNAC	2 cut(s)	230, 560
MalI	GATC	6 cut(s)	27, 108, 218, 648, 785, 842
MboI	GATC	6 cut(s)	25, 106, 216, 646, 783, 840
MboII	GAAGA	5 cut(s)	262, 275, 368, 595, 628
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	3 cut(s)	13, 797, 887
MluCI	AATT	4 cut(s)	156, 338, 450, 663
MnlI	CCTC	2 cut(s)	190, 328
MseI	TTAA	4 cut(s)	84, 485, 788, 879
MspCI	CTTAAG	1 cut(s)	878
MspR9I	CCNGG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	521
MvnI	CGCG	2 cut(s)	99, 925
MwoI	GCNNNNNNNGC	2 cut(s)	428, 626
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	6 cut(s)	25, 106, 216, 646, 783, 840
NlaIII	CATG	4 cut(s)	113, 179, 391, 714
NlaIV	GGNNCC	3 cut(s)	525, 526, 795
NmuCI	GTSAC	1 cut(s)	560
NspV	TTCGAA	2 cut(s)	660, 854
PaeR7I	CTCGAG	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	845
PfeI	GAWTC	2 cut(s)	170, 820
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	2 cut(s)	377, 721
PpuMI	RGGWCCY	1 cut(s)	524
PshAI	GACNNNNGTC	1 cut(s)	493
PshBI	ATTAAT	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	519
PspFI	CCCAGC	2 cut(s)	5, 604
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	3 cut(s)	525, 526, 795
PspOMI	GGGCCC	1 cut(s)	793
PspPI	GGNCC	3 cut(s)	524, 793, 794
PspPPI	RGGWCCY	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	2 cut(s)	544, 814
RsaNI	GTAC	2 cut(s)	543, 813
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	4 cut(s)	84, 485, 788, 879
SatI	GCNGC	2 cut(s)	376, 720
Sau3AI	GATC	6 cut(s)	25, 106, 216, 646, 783, 840
Sau96I	GGNCC	3 cut(s)	524, 793, 794
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	3 cut(s)	13, 797, 887
SfaNI	GCATC	2 cut(s)	521, 576
Sfr274I	CTCGAG	1 cut(s)	162
SfuI	TTCGAA	2 cut(s)	660, 854
SinI	GGWCC	1 cut(s)	524
SlaI	CTCGAG	1 cut(s)	162
SmlI	CTYRAG	3 cut(s)	162, 350, 878
SmoI	CTYRAG	3 cut(s)	162, 350, 878
Sse9I	AATT	4 cut(s)	156, 338, 450, 663
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	3 cut(s)	39, 546, 743
StyD4I	CCNGG	1 cut(s)	519
TaaI	ACNGT	5 cut(s)	560, 571, 693, 809, 893
TaiI	ACGT	2 cut(s)	204, 438
TaqI	TCGA	5 cut(s)	163, 660, 839, 848, 854
TasI	AATT	4 cut(s)	156, 338, 450, 663
TfiI	GAWTC	2 cut(s)	170, 820
Tru1I	TTAA	4 cut(s)	84, 485, 788, 879
Tru9I	TTAA	4 cut(s)	84, 485, 788, 879
TscAI	CASTG	2 cut(s)	385, 565
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	2 cut(s)	375, 719
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	2 cut(s)	417, 691
TspGWI	ACGGA	2 cut(s)	530, 891
TspRI	CASTG	2 cut(s)	385, 565
Van91I	CCANNNNNTGG	1 cut(s)	809
Vha464I	CTTAAG	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	524
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	2 cut(s)	156, 338
XhoI	CTCGAG	1 cut(s)	162
XspI	CTAG	3 cut(s)	39, 546, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.