AT4G11990

Protein TPX2-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005322
Physical Location & Seq
Reverse (-)
7186012 .. 7189962
3951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11990.1

Sequence Viewer

Length: 1506 bp
ATGGAGATGGAGACGGACACAGAGACAGAGTCCGATGAAGATATGGAGATGGAGACAATGGTGTTTGAAGTGACTGAAATTGATTTGGAGTATGAGTTTGATGCTTCTCGTTGGTTTGATTTCACTCGAGAGGAGTTGCCGTTGGAGTCTCGTGCTGCTGAACTTTGGTTCGAGACCGCTCAGTCTTATCCACCGTCTCCTTTTGCAATGAAACTGTTAATGATAGAAGAGGTTTATGATGAAAAGACCGAGTCTTTGTCAAAATCAGAAGATGGGGAAGTCACAGTAGAAGTTCAGGAGAGTGACAGAGAAATCCCTCAGCAACCAGATGTGAATGAAACAGGAAATGGAATGAAGTCTGGGGTGTTTAGATTCATTCAAGGTGGTACTTTGAGCAAAGTTCCAAACGATTCCTTACATAAAGGACCAACATTTAGCAATCGGATTCATAGTGATAAGCTCAAGTACCGACCAAAGTCAAGCATCAGGCCTATAACGAGAAGCTCAACATTGATGAAACCTACTGCTAGCGTTTTAGCAAAACAAGATAATGCCAGACTGCATATGCAAGTGGATGAAATTAAGTGTCTTTCATCTGAAATCCAATCTGCTAAAAGACAGAAGCTCGATGGTGGTCTACTTCGTAAGGTTGCTGAAGCGGCTCAAGAAACAAATTTGGTCCATAAGGCACTCAAGAAGGATCTTGATAAAAACTCACTACATACCAGGATGAAGATTACTATCCCACAGGAGCCTGATTTTGCAACTTCACATAGAGCAAATAGGATACGGCACAAGAACGATGCTAAGTTGGAGCAGGACTCAACATCAGTATATAGATTCAAAGCACGACCCTTGAACCGAAAAATCTTCGAGGCTCCATCATTGCCCATTCGAAAAAACAGCACTCCTAAACTACCTGAATTTCAAGAATTTCGTTTAAAGACCTCAGAAAGAGCTATGCAACATTCATCAGCAGTATCAACTTCGTCATATCAGGGAAATAATAATCATAAGGAGGCAGATAAGCCTAATAGGACATTTCCTGACGGTGTTAACAGGGAACCAAGAAGACAAAGAGCTATCGATATACCTAAGGATGATGTTAGAAAAGACCTCTTCAAAGCTCGGCCTCTTAACAAGAAGATACTTTCAAGTGGACGAGAGATTGGCATGTTCACAAAAAGCAAGCGAGAAACTACAGCTCCCTTGGGGTTTAGTTTTCACTCGGAAAGGACGGCTCAACCAGATTTGCCAACAGACCTTTTCAGTAAGCTCTCTTTATCATCCGAACTCCGGCCAAACAATGGTTCTCGCTTAAGATTTCCTCAGCCTGAACAAGTAAAGGGCTCAAAGGAAAATAGATTGAACTCCTTTCAAGCAGGGAATGAAAGAACAAGCAAGTTTATGGGAAACCCAATGGTACAACCCAGTGTAGTTCCTGAAACTAGCCGGCAATGGACTTCTCGGAGTGGTAAGCTCGAAGCAACGGTGCAACTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

501

Amino Acids

57.22

Weight (kDa)

8.91

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 244 - 408 6.4e-47 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 181
AccB7I CCANNNNNTGG 1 cut(s) 1307
AccBSI CCGCTC 1 cut(s) 179
AccI GTMKAC 1 cut(s) 637
AciI CCGC 2 cut(s) 177, 659
AclWI GGATC 1 cut(s) 708
AcoI YGGCCR 1 cut(s) 1298
AcsI RAATTY 3 cut(s) 673, 923, 932
AcuI CTGAAG 1 cut(s) 675
AfaI GTAC 3 cut(s) 388, 467, 1425
AfiI CCNNNNNNNGG 2 cut(s) 1296, 1307
AflII CTTAAG 1 cut(s) 1318
AgsI TTSAA 9 cut(s) 68, 380, 844, 859, 929, 1123, 1155, 1369, 1379
AjnI CCWGG 1 cut(s) 725
AjuI GAANNNNNNNTTGG 2 cut(s) 1294, 1326
AluBI AGCT 9 cut(s) 460, 504, 625, 959, 1082, 1127, 1205, 1276, 1480
AluI AGCT 9 cut(s) 460, 504, 625, 959, 1082, 1127, 1205, 1276, 1480
Alw26I GTCTC 6 cut(s) 5, 17, 47, 153, 167, 201
AlwI GGATC 1 cut(s) 708
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 3 cut(s) 488, 1130, 1298
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 3 cut(s) 673, 923, 932
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
AspS9I GGNCC 2 cut(s) 425, 679
AsuII TTCGAA 1 cut(s) 895
AsuNHI GCTAGC 1 cut(s) 527
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 2 cut(s) 425, 679
AxyI CCTNAGG 1 cut(s) 1095
BanII GRGCYC 1 cut(s) 1352
BauI CACGAG 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 1078
BbvCI CCTCAGC 2 cut(s) 318, 1329
BbvI GCAGC 1 cut(s) 142
BccI CCATC 4 cut(s) 43, 266, 623, 889
BceAI ACGGC 3 cut(s) 124, 806, 1254
BciT130I CCWGG 1 cut(s) 727
BciVI GTATCC 1 cut(s) 780
BcoDI GTCTC 6 cut(s) 5, 17, 47, 153, 167, 201
BfaI CTAG 2 cut(s) 528, 1449
BfmI CTRYAG 1 cut(s) 1200
BfrI CTTAAG 1 cut(s) 1318
BfuI GTATCC 1 cut(s) 780
BisI GCNGC 2 cut(s) 156, 660
BlsI GCNGC 2 cut(s) 157, 661
Bme1390I CCNGG 1 cut(s) 727
Bme18I GGWCC 2 cut(s) 425, 679
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 2 cut(s) 425, 679
BmiI GGNNCC 3 cut(s) 753, 879, 1065
BmrFI CCNGG 1 cut(s) 727
BmrI ACTGGG 1 cut(s) 1425
BmsI GCATC 3 cut(s) 91, 492, 793
BmtI GCTAGC 1 cut(s) 531
BmuI ACTGGG 1 cut(s) 1425
BoxI GACNNNNGTC 1 cut(s) 475
BpiI GAAGAC 1 cut(s) 1078
BplI GAGNNNNNCTC 2 cut(s) 806, 838
Bpu10I CCTNAGC 2 cut(s) 318, 1329
Bpu14I TTCGAA 1 cut(s) 895
BpuEI CTTGAG 3 cut(s) 446, 648, 677
Bsa29I ATCGAT 1 cut(s) 1086
BsaBI GATNNNNATC 1 cut(s) 740
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 1209
BsaXI ACNNNNNCTCC 6 cut(s) 80, 110, 125, 155, 1189, 1219
Bsc4I CCNNNNNNNGG 2 cut(s) 1296, 1307
Bse118I RCCGGY 1 cut(s) 1452
Bse1I ACTGG 1 cut(s) 1431
Bse21I CCTNAGG 1 cut(s) 1095
Bse3DI GCAATG 3 cut(s) 213, 884, 1463
Bse8I GATNNNNATC 1 cut(s) 740
BseBI CCWGG 1 cut(s) 727
BseCI ATCGAT 1 cut(s) 1086
BseDI CCNNGG 1 cut(s) 1209
BseGI GGATG 4 cut(s) 580, 735, 1105, 1286
BseJI GATNNNNATC 1 cut(s) 740
BseLI CCNNNNNNNGG 2 cut(s) 1296, 1307
BseMI GCAATG 3 cut(s) 213, 884, 1463
BseMII CTCAG 4 cut(s) 194, 332, 963, 1343
BseNI ACTGG 1 cut(s) 1431
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 3 cut(s) 490, 1132, 1300
BshVI ATCGAT 1 cut(s) 1086
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 2 cut(s) 1297, 1453
BslI CCNNNNNNNGG 2 cut(s) 1296, 1307
BsmAI GTCTC 6 cut(s) 5, 17, 47, 153, 167, 201
BsmBI CGTCTC 2 cut(s) 5, 201
BsnI GGCC 3 cut(s) 490, 1132, 1300
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 895
Bsp1286I GDGCHC 1 cut(s) 1352
Bsp143I GATC 1 cut(s) 700
BspACI CCGC 2 cut(s) 177, 659
BspANI GGCC 3 cut(s) 490, 1132, 1300
BspCNI CTCAG 4 cut(s) 193, 331, 962, 1342
BspDI ATCGAT 1 cut(s) 1086
BspLI GGNNCC 3 cut(s) 753, 879, 1065
BspOI GCTAGC 1 cut(s) 531
BspPI GGATC 1 cut(s) 708
BspT104I TTCGAA 1 cut(s) 895
BspTI CTTAAG 1 cut(s) 1318
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 179
BsrDI GCAATG 3 cut(s) 213, 884, 1463
BsrFI RCCGGY 1 cut(s) 1452
BsrI ACTGG 1 cut(s) 1431
BssAI RCCGGY 1 cut(s) 1452
BssECI CCNNGG 1 cut(s) 1209
BssMI GATC 1 cut(s) 700
BssSI CACGAG 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 1209
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 727
Bst4CI ACNGT 5 cut(s) 195, 216, 286, 1052, 1492
Bst6I CTCTTC 2 cut(s) 222, 1124
BstAFI CTTAAG 1 cut(s) 1318
BstBI TTCGAA 1 cut(s) 895
BstC8I GCNNGC 3 cut(s) 529, 1190, 1454
BstDEI CTNAG 6 cut(s) 180, 318, 807, 949, 1095, 1329
BstF5I GGATG 4 cut(s) 580, 735, 1105, 1286
BstKTI GATC 1 cut(s) 703
BstMAI GTCTC 6 cut(s) 5, 17, 47, 153, 167, 201
BstMBI GATC 1 cut(s) 700
BstMWI GCNNNNNNNGC 1 cut(s) 659
BstNI CCWGG 1 cut(s) 727
BstNSI RCATGY 1 cut(s) 1177
BstPAI GACNNNNGTC 1 cut(s) 475
BstSCI CCNGG 1 cut(s) 725
BstSFI CTRYAG 1 cut(s) 1200
BstV1I GCAGC 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 1078
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
Bsu15I ATCGAT 1 cut(s) 1086
Bsu36I CCTNAGG 1 cut(s) 1095
BsuI GTATCC 1 cut(s) 780
BsuRI GGCC 3 cut(s) 490, 1132, 1300
BsuTUI ATCGAT 1 cut(s) 1086
BtsCI GGATG 4 cut(s) 580, 735, 1105, 1286
BtsIMutI CAGTG 1 cut(s) 1438
Cac8I GCNNGC 3 cut(s) 529, 1190, 1454
Cfr10I RCCGGY 1 cut(s) 1452
Cfr13I GGNCC 2 cut(s) 425, 679
ClaI ATCGAT 1 cut(s) 1086
Csp6I GTAC 3 cut(s) 387, 466, 1424
CviAII CATG 1 cut(s) 1174
CviQI GTAC 3 cut(s) 387, 466, 1424
DdeI CTNAG 6 cut(s) 180, 318, 807, 949, 1095, 1329
DpnI GATC 1 cut(s) 702
DpnII GATC 1 cut(s) 700
DraI TTTAAA 1 cut(s) 942
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 1298
Eam1104I CTCTTC 2 cut(s) 222, 1124
EarI CTCTTC 2 cut(s) 222, 1124
Eco130I CCWWGG 1 cut(s) 1209
Eco147I AGGCCT 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 1352
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 2 cut(s) 425, 679
Eco57I CTGAAG 1 cut(s) 675
Eco81I CCTNAGG 1 cut(s) 1095
Eco88I CYCGRG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 725
EcoT14I CCWWGG 1 cut(s) 1209
EcoT38I GRGCYC 1 cut(s) 1352
ErhI CCWWGG 1 cut(s) 1209
Esp3I CGTCTC 2 cut(s) 5, 201
FaeI CATG 1 cut(s) 1177
FatI CATG 1 cut(s) 1173
FauNDI CATATG 1 cut(s) 564
FblI GTMKAC 1 cut(s) 637
Fnu4HI GCNGC 2 cut(s) 156, 660
FokI GGATG 4 cut(s) 587, 742, 1112, 1273
FriOI GRGCYC 1 cut(s) 1352
Fsp4HI GCNGC 2 cut(s) 156, 660
FspBI CTAG 2 cut(s) 528, 1449
GluI GCNGC 2 cut(s) 156, 660
HaeIII GGCC 3 cut(s) 490, 1132, 1300
HapII CCGG 2 cut(s) 1297, 1453
Hin1II CATG 1 cut(s) 1177
HincII GTYRAC 1 cut(s) 1057
HindII GTYRAC 1 cut(s) 1057
HinfI GANTC 8 cut(s) 29, 146, 251, 372, 410, 445, 821, 840
HpaI GTTAAC 1 cut(s) 1057
HpaII CCGG 2 cut(s) 1297, 1453
Hpy166II GTNNAC 4 cut(s) 638, 1057, 1160, 1179
Hpy188I TCNGA 8 cut(s) 34, 268, 444, 598, 952, 1231, 1291, 1470
Hpy188III TCNNGA 9 cut(s) 128, 172, 296, 665, 694, 704, 929, 1046, 1442
Hpy8I GTNNAC 4 cut(s) 638, 1057, 1160, 1179
HpyAV CCTTC 1 cut(s) 691
HpyCH4III ACNGT 5 cut(s) 195, 216, 286, 1052, 1492
HpyCH4V TGCA 6 cut(s) 206, 562, 568, 764, 964, 1495
HpyF10VI GCNNNNNNNGC 1 cut(s) 659
HpyF3I CTNAG 6 cut(s) 180, 318, 807, 949, 1095, 1329
Hsp92II CATG 1 cut(s) 1177
KroI GCCGGC 1 cut(s) 1452
KroNI GCCGGC 1 cut(s) 1454
KspAI GTTAAC 1 cut(s) 1057
Kzo9I GATC 1 cut(s) 700
LmnI GCTCC 4 cut(s) 751, 814, 883, 1210
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 3 cut(s) 91, 492, 793
MaeI CTAG 2 cut(s) 528, 1449
MaeIII GTNAC 3 cut(s) 70, 280, 302
MalI GATC 1 cut(s) 702
MbiI CCGCTC 1 cut(s) 179
MboI GATC 1 cut(s) 700
MboII GAAGA 8 cut(s) 50, 239, 281, 745, 862, 1083, 1111, 1156
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 1 cut(s) 1352
MluCI AATT 6 cut(s) 78, 579, 673, 923, 932, 1501
MlyI GAGTC 4 cut(s) 38, 155, 260, 815
MmeI TCCRAC 2 cut(s) 123, 792
MnlI CCTC 9 cut(s) 124, 223, 327, 868, 958, 1012, 1127, 1143, 1338
MroNI GCCGGC 1 cut(s) 1452
MseI TTAA 7 cut(s) 218, 582, 941, 1056, 1137, 1319, 1504
MspCI CTTAAG 1 cut(s) 1318
MspI CCGG 2 cut(s) 1297, 1453
MspR9I CCNGG 1 cut(s) 727
MvaI CCWGG 1 cut(s) 727
MwoI GCNNNNNNNGC 1 cut(s) 659
NaeI GCCGGC 1 cut(s) 1454
NdeI CATATG 1 cut(s) 564
NdeII GATC 1 cut(s) 700
NgoMIV GCCGGC 1 cut(s) 1452
NheI GCTAGC 1 cut(s) 527
NlaIII CATG 1 cut(s) 1177
NlaIV GGNNCC 3 cut(s) 753, 879, 1065
NmeAIII GCCGAG 1 cut(s) 1108
NmuCI GTSAC 3 cut(s) 70, 280, 302
NspI RCATGY 1 cut(s) 1177
NspV TTCGAA 1 cut(s) 895
PaeR7I CTCGAG 1 cut(s) 126
PceI AGGCCT 1 cut(s) 490
PdiI GCCGGC 1 cut(s) 1454
PfeI GAWTC 4 cut(s) 372, 410, 445, 840
PflFI GACNNNGTC 2 cut(s) 28, 250
PflMI CCANNNNNTGG 1 cut(s) 1307
PkrI GCNGC 2 cut(s) 157, 661
PleI GAGTC 4 cut(s) 37, 154, 259, 815
PpsI GAGTC 4 cut(s) 37, 154, 259, 815
PshAI GACNNNNGTC 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 725
PspGI CCWGG 1 cut(s) 725
PspN4I GGNNCC 3 cut(s) 753, 879, 1065
PspPI GGNCC 2 cut(s) 425, 679
PsuI RGATCY 1 cut(s) 700
PsyI GACNNNGTC 2 cut(s) 28, 250
RsaI GTAC 3 cut(s) 388, 467, 1425
RsaNI GTAC 3 cut(s) 387, 466, 1424
SaqAI TTAA 7 cut(s) 218, 582, 941, 1056, 1137, 1319, 1504
SatI GCNGC 2 cut(s) 156, 660
Sau3AI GATC 1 cut(s) 700
Sau96I GGNCC 2 cut(s) 425, 679
SchI GAGTC 4 cut(s) 38, 155, 260, 815
ScrFI CCNGG 1 cut(s) 727
SduI GDGCHC 1 cut(s) 1352
SfaNI GCATC 3 cut(s) 91, 492, 793
SfcI CTRYAG 1 cut(s) 1200
Sfr274I CTCGAG 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 895
SinI GGWCC 2 cut(s) 425, 679
SlaI CTCGAG 1 cut(s) 126
SmlI CTYRAG 5 cut(s) 126, 461, 663, 692, 1318
SmoI CTYRAG 5 cut(s) 126, 461, 663, 692, 1318
Sse9I AATT 6 cut(s) 78, 579, 673, 923, 932, 1501
SseBI AGGCCT 1 cut(s) 490
SsiI CCGC 2 cut(s) 177, 659
SspMI CTAG 2 cut(s) 528, 1449
StuI AGGCCT 1 cut(s) 490
StyD4I CCNGG 1 cut(s) 725
StyI CCWWGG 1 cut(s) 1209
TaaI ACNGT 5 cut(s) 195, 216, 286, 1052, 1492
TaqI TCGA 7 cut(s) 127, 171, 627, 873, 895, 1086, 1482
TaqII GACCGA 1 cut(s) 263
TasI AATT 6 cut(s) 78, 579, 673, 923, 932, 1501
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 4 cut(s) 372, 410, 445, 840
Tru1I TTAA 7 cut(s) 218, 582, 941, 1056, 1137, 1319, 1504
Tru9I TTAA 7 cut(s) 218, 582, 941, 1056, 1137, 1319, 1504
TscAI CASTG 1 cut(s) 1438
TseFI GTSAC 3 cut(s) 70, 280, 302
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 3 cut(s) 70, 280, 302
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 1438
Tth111I GACNNNGTC 2 cut(s) 28, 250
Van91I CCANNNNNTGG 1 cut(s) 1307
Vha464I CTTAAG 1 cut(s) 1318
VpaK11BI GGWCC 2 cut(s) 425, 679
XapI RAATTY 3 cut(s) 673, 923, 932
XceI RCATGY 1 cut(s) 1177
XhoI CTCGAG 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 637
XspI CTAG 2 cut(s) 528, 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.