Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019054.1

Orthogroup ID

OG0005322

Physical Location & Seq

Genomic Coordinates Forward (+)

6559 .. 10943

Gene Structure 4385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019054.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

atggaggaagatatggaggtggagcaagtgtttacggcgcacgaagtggacattgactacgagtttgacgcggccaggttctttgattttagtcggcacgagacgccggtggaggcgcggcgggctgagctctggttcgaatccgccaagagctatcctccttctcctgttgtgacaaggatgatactaggaggggacattctcctgggaaatgtgaatacctccccaaaatctaaagatgtggagaatacaaatggcattggctgtaatatcggcgcgggccaagaatcgtgtgcaatggatgtaaatagcggagattgtgaaggaatgaataaagggattttcggcaacttgcaaagagttctaaatcaatcacatggagcaggcacagggttgacattcaatcattcaaaaggtcaaaataactcttcagtaaagccatctttccccaggaaatcaactttgatgaaacctacagcaagtcaacttgctaagcaaaatcgcctccctcatattggtggttccagatttcagacactacatgttcaaaacagtgataagagcttctgtagctcttctggagttgaaactcaagctaccaaaaggcagaagttagagggaggtcactcgcaaaaggttactactgaagcaatgcagcaaactaatttcatccacaaggcacctaaaaaggtcgaaacttttgataagacgcatgccaagttgaaaattactattccaatagagcctgactttgaaacgacatatagggcgcaaagaataaggcctaagaatggatcagtgttggaacaagtgccatcagctcctcgaaaattcaaagcccgtccactgaacaaaaaaatttttgaggctccctcactgccacttccaaagaggagcactccgaagttgccagaatttcatgaatttcacctgaagacaatggaaagagctatgcaaaatacatctactgttccattatcctcacatcatttcaatggtcaagagaaggtgttggacaaacctagtgcttccactgttgcaggaaatggaaacagagaacccagaaggccgagtaaatgtcttaagcaggatggaagtgatgtaatgccaaaatttaaagctcatcctcttaataaaaagatcttttctagcaaaggggatatcggtgttttctggaatagcaaaagagaaaccactgtaccaatggaatttaattttcagacagagaggagaactcagcagattccgccaactgatcttttcagtaagctctctttaacatctgaactccagccaaataagggaactcagttcaacttgcctcagccaacatctgtatcagtgaaggactcaaaagaaaatagagcgaataatttccaaccagaacataagataatggtaaaagagaaatcttcactgtttggtggaaagcaagctctatttgggggtgccaggtccatcagtgatgttgataacaaatcaaggatgaggagtttgggagtccgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2_importin

Protein Analysis

502

Amino Acids

56.01

Weight (kDa)

9.68

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11990 AT4G22860 AT4G22860 AT4G22860
fragaria_vesca	FvH4_5g00990 FvH4_5g00990 FvH4_5g00990 FvH4_5g00990 FvH4_5g00990 FvH4_5g00990
malus_domestica	MD04G1076100.v1.1 MD06G1068100.v1.1
prunus_persica	Prupe.5G083700_v2.0.a1 Prupe.5G083700_v2.0.a1 Prupe.5G083700_v2.0.a1
pyrus_communis	pycom04g06700
rosa_chinensis	RchiOBHm_Chr7g0200391
rosa_laevigata	RLG00000003730
rosa_multiflora	Rmu_sc0005211.1_g000001 Rmu_sc0019054.1_g000002
rosa_roxburghii	Rroxscaffold_3G00256040
rosa_rugosa	Rorug07G0060000 Rorug07G0060100 Rorug07G0060100
rosa_samantha	Rh7AG185200 Rh7BG188300 Rh7CG195500 Rh7DG189300
rosa_wichuraiana	Rw7G016230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	679, 1448
AccII	CGCG	3 cut(s)	71, 118, 278
AciI	CCGC	8 cut(s)	71, 118, 121, 144, 278, 312, 1247, 1504
AclWI	GGATC	1 cut(s)	802
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	6 cut(s)	830, 858, 914, 923, 1112, 1208
AcuI	CTGAAG	3 cut(s)	414, 666, 953
AcyI	GRCGYC	1 cut(s)	104
AdeI	CACNNNGTG	1 cut(s)	46
AfaI	GTAC	1 cut(s)	1200
AfiI	CCNNNNNNNGG	3 cut(s)	515, 791, 1301
AflII	CTTAAG	1 cut(s)	1082
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	9 cut(s)	403, 411, 548, 587, 724, 755, 835, 994, 1315
AjnI	CCWGG	4 cut(s)	74, 204, 449, 1451
Alw21I	GWGCWC	2 cut(s)	132, 899
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	802
AoxI	GGCC	4 cut(s)	72, 280, 782, 1067
ApeKI	GCWGC	1 cut(s)	655
ApoI	RAATTY	6 cut(s)	830, 858, 914, 923, 1112, 1208
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	1 cut(s)	1373
AspLEI	GCGC	4 cut(s)	40, 118, 278, 772
AspS9I	GGNCC	2 cut(s)	280, 1455
AsuHPI	GGTGA	1 cut(s)	920
AsuII	TTCGAA	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	1455
BaeI	ACNNNNGTAYC	4 cut(s)	1182, 1215, 1320, 1353
BanI	GGYRCC	2 cut(s)	679, 1448
BanII	GRGCYC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	941
Bbv12I	GWGCWC	2 cut(s)	132, 899
BbvCI	CCTCAGC	1 cut(s)	1323
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	4 cut(s)	448, 823, 1085, 1466
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	4 cut(s)	76, 206, 451, 1453
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	4 cut(s)	188, 1023, 1149, 1507
BfmI	CTRYAG	2 cut(s)	474, 568
BfrI	CTTAAG	1 cut(s)	1082
BglII	AGATCT	1 cut(s)	1140
BisI	GCNGC	3 cut(s)	72, 119, 656
BlpI	GCTNAGC	2 cut(s)	126, 492
BlsI	GCNGC	3 cut(s)	73, 120, 657
Bme1390I	CCNGG	4 cut(s)	76, 206, 451, 1453
Bme18I	GGWCC	1 cut(s)	1455
BmgT120I	GGNCC	2 cut(s)	280, 1455
BmiI	GGNNCC	4 cut(s)	523, 681, 870, 1450
BmrFI	CCNGG	4 cut(s)	76, 206, 451, 1453
BpiI	GAAGAC	1 cut(s)	941
BplI	GAGNNNNNCTC	8 cut(s)	142, 174, 857, 889, 883, 915, 1219, 1251
BpmI	CTGGAG	2 cut(s)	600, 1274
Bpu10I	CCTNAGC	1 cut(s)	1323
Bpu1102I	GCTNAGC	2 cut(s)	126, 492
Bpu14I	TTCGAA	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	205, 449
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	3 cut(s)	515, 791, 1301
Bse118I	RCCGGY	1 cut(s)	106
Bse3DI	GCAATG	2 cut(s)	303, 657
BseBI	CCWGG	4 cut(s)	76, 206, 451, 1453
BseDI	CCNNGG	2 cut(s)	205, 449
BseGI	GGATG	6 cut(s)	186, 307, 669, 1096, 1123, 1491
BseLI	CCNNNNNNNGG	3 cut(s)	515, 791, 1301
BseMI	GCAATG	2 cut(s)	303, 657
BseMII	CTCAG	4 cut(s)	117, 1250, 1322, 1337
BseRI	GAGGAG	4 cut(s)	813, 907, 1243, 1504
BseXI	GCAGC	1 cut(s)	667
Bsh1236I	CGCG	3 cut(s)	71, 118, 278
BshFI	GGCC	4 cut(s)	74, 282, 784, 1069
BshNI	GGYRCC	2 cut(s)	679, 1448
BsiHKAI	GWGCWC	2 cut(s)	132, 899
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	515, 791, 1301
BsmAI	GTCTC	1 cut(s)	95
BsmBI	CGTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	4 cut(s)	74, 282, 784, 1069
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	132, 899
Bsp143I	GATC	3 cut(s)	794, 1140, 1255
Bsp1720I	GCTNAGC	2 cut(s)	126, 492
BspACI	CCGC	8 cut(s)	71, 118, 121, 144, 278, 312, 1247, 1504
BspANI	GGCC	4 cut(s)	74, 282, 784, 1069
BspCNI	CTCAG	4 cut(s)	118, 1249, 1321, 1336
BspFNI	CGCG	3 cut(s)	71, 118, 278
BspHI	TCATGA	1 cut(s)	919
BspLI	GGNNCC	4 cut(s)	523, 681, 870, 1450
BspPI	GGATC	1 cut(s)	802
BspQI	GCTCTTC	1 cut(s)	580
BspT104I	TTCGAA	1 cut(s)	138
BspT107I	GGYRCC	2 cut(s)	679, 1448
BspTI	CTTAAG	1 cut(s)	1082
BsrDI	GCAATG	2 cut(s)	303, 657
BsrFI	RCCGGY	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	205, 449
BssMI	GATC	3 cut(s)	794, 1140, 1255
BssNI	GRCGYC	1 cut(s)	104
BssSI	CACGAG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	98
Bst2UI	CCWGG	4 cut(s)	76, 206, 451, 1453
Bst4CI	ACNGT	5 cut(s)	554, 970, 1036, 1198, 1419
Bst6I	CTCTTC	2 cut(s)	433, 580
BstACI	GRCGYC	1 cut(s)	104
BstAFI	CTTAAG	1 cut(s)	1082
BstBI	TTCGAA	1 cut(s)	138
BstC8I	GCNNGC	5 cut(s)	123, 280, 385, 714, 1434
BstDEI	CTNAG	6 cut(s)	126, 492, 786, 1236, 1308, 1323
BstF5I	GGATG	6 cut(s)	186, 307, 669, 1096, 1123, 1491
BstFNI	CGCG	3 cut(s)	71, 118, 278
BstHHI	GCGC	4 cut(s)	40, 118, 278, 772
BstKTI	GATC	3 cut(s)	797, 1143, 1258
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	794, 1140, 1255
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 122, 127, 570, 1246
BstNI	CCWGG	4 cut(s)	76, 206, 451, 1453
BstNSI	RCATGY	2 cut(s)	545, 716
BstSCI	CCNGG	4 cut(s)	74, 204, 449, 1451
BstSFI	CTRYAG	2 cut(s)	474, 568
BstUI	CGCG	3 cut(s)	71, 118, 278
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	941
BstX2I	RGATCY	1 cut(s)	1140
BstYI	RGATCY	1 cut(s)	1140
BsuRI	GGCC	4 cut(s)	74, 282, 784, 1069
BtsCI	GGATG	6 cut(s)	186, 307, 669, 1096, 1123, 1491
BtsI	GCAGTG	1 cut(s)	875
BtsIMutI	CAGTG	9 cut(s)	559, 804, 845, 875, 1032, 1194, 1347, 1415, 1468
Cac8I	GCNNGC	5 cut(s)	123, 280, 385, 714, 1434
CciI	TCATGA	1 cut(s)	919
CfoI	GCGC	4 cut(s)	40, 118, 278, 772
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	280, 1455
CseI	GACGC	3 cut(s)	77, 112, 718
Csp6I	GTAC	1 cut(s)	1199
CviAII	CATG	4 cut(s)	377, 542, 713, 920
CviQI	GTAC	1 cut(s)	1199
DdeI	CTNAG	6 cut(s)	126, 492, 786, 1236, 1308, 1323
DpnI	GATC	3 cut(s)	796, 1142, 1257
DpnII	GATC	3 cut(s)	794, 1140, 1255
DraI	TTTAAA	1 cut(s)	1117
DraIII	CACNNNGTG	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	2 cut(s)	433, 580
EarI	CTCTTC	2 cut(s)	433, 580
EciI	GGCGGA	2 cut(s)	133, 1236
Ecl136II	GAGCTC	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	784
Eco24I	GRGCYC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	1162
Eco47I	GGWCC	1 cut(s)	1455
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	3 cut(s)	414, 666, 953
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	4 cut(s)	74, 204, 449, 1451
EcoRV	GATATC	1 cut(s)	1162
EcoT38I	GRGCYC	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	4 cut(s)	380, 545, 716, 923
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	4 cut(s)	376, 541, 712, 919
FauI	CCCGC	2 cut(s)	114, 271
Fnu4HI	GCNGC	3 cut(s)	72, 119, 656
FokI	GGATG	6 cut(s)	193, 314, 656, 1103, 1110, 1498
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	3 cut(s)	72, 119, 656
FspBI	CTAG	4 cut(s)	188, 1023, 1149, 1507
GlaI	GCGC	4 cut(s)	39, 117, 277, 771
GluI	GCNGC	3 cut(s)	72, 119, 656
GsuI	CTGGAG	2 cut(s)	600, 1274
HaeIII	GGCC	4 cut(s)	74, 282, 784, 1069
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	3 cut(s)	77, 112, 718
HhaI	GCGC	4 cut(s)	40, 118, 278, 772
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	380, 545, 716, 923
Hin6I	GCGC	4 cut(s)	38, 116, 276, 770
HinP1I	GCGC	4 cut(s)	38, 116, 276, 770
HincII	GTYRAC	2 cut(s)	396, 485
HindII	GTYRAC	2 cut(s)	396, 485
HinfI	GANTC	5 cut(s)	140, 287, 1243, 1349, 1500
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	920
Hpy166II	GTNNAC	5 cut(s)	33, 49, 396, 485, 845
Hpy188I	TCNGA	4 cut(s)	534, 903, 1221, 1285
Hpy188III	TCNNGA	5 cut(s)	525, 579, 920, 1001, 1174
Hpy8I	GTNNAC	5 cut(s)	33, 49, 396, 485, 845
HpyAV	CCTTC	5 cut(s)	171, 317, 1000, 1059, 1339
HpyCH4III	ACNGT	5 cut(s)	554, 970, 1036, 1198, 1419
HpyCH4V	TGCA	5 cut(s)	296, 355, 655, 955, 1040
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 122, 127, 570, 1246
HpyF3I	CTNAG	6 cut(s)	126, 492, 786, 1236, 1308, 1323
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	380, 545, 716, 923
HspAI	GCGC	4 cut(s)	38, 116, 276, 770
Kzo9I	GATC	3 cut(s)	794, 1140, 1255
LguI	GCTCTTC	1 cut(s)	580
LmnI	GCTCC	5 cut(s)	22, 380, 826, 874, 894
Lsp1109I	GCAGC	1 cut(s)	667
MaeI	CTAG	4 cut(s)	188, 1023, 1149, 1507
MaeIII	GTNAC	3 cut(s)	172, 623, 637
MalI	GATC	3 cut(s)	796, 1142, 1257
MboI	GATC	3 cut(s)	794, 1140, 1255
MboII	GAAGA	5 cut(s)	20, 420, 567, 946, 1404
MflI	RGATCY	1 cut(s)	1140
MhlI	GDGCHC	2 cut(s)	132, 899
MlyI	GAGTC	2 cut(s)	1343, 1509
MmeI	TCCRAC	3 cut(s)	783, 993, 1402
MroXI	GAANNNNTTC	1 cut(s)	1373
MseI	TTAA	5 cut(s)	1083, 1116, 1131, 1212, 1277
MslI	CAYNNNNRTG	2 cut(s)	516, 993
MspCI	CTTAAG	1 cut(s)	1082
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	4 cut(s)	76, 206, 451, 1453
MvaI	CCWGG	4 cut(s)	76, 206, 451, 1453
MvnI	CGCG	3 cut(s)	71, 118, 278
MwoI	GCNNNNNNNGC	5 cut(s)	103, 122, 127, 570, 1246
NdeII	GATC	3 cut(s)	794, 1140, 1255
NlaIII	CATG	4 cut(s)	380, 545, 716, 923
NlaIV	GGNNCC	4 cut(s)	523, 681, 870, 1450
NmeAIII	GCCGAG	1 cut(s)	1095
NmuCI	GTSAC	2 cut(s)	172, 623
NspI	RCATGY	2 cut(s)	545, 716
NspV	TTCGAA	1 cut(s)	138
PaeI	GCATGC	1 cut(s)	716
PagI	TCATGA	1 cut(s)	919
PceI	AGGCCT	1 cut(s)	784
PciI	ACATGT	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	1373
PfeI	GAWTC	3 cut(s)	140, 287, 1243
PkrI	GCNGC	3 cut(s)	73, 120, 657
PleI	GAGTC	2 cut(s)	1343, 1508
PpsI	GAGTC	2 cut(s)	1343, 1508
PscI	ACATGT	1 cut(s)	541
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	4 cut(s)	74, 204, 449, 1451
PspGI	CCWGG	4 cut(s)	74, 204, 449, 1451
PspN4I	GGNNCC	4 cut(s)	523, 681, 870, 1450
PspPI	GGNCC	2 cut(s)	280, 1455
PsuI	RGATCY	1 cut(s)	1140
RsaI	GTAC	1 cut(s)	1200
RsaNI	GTAC	1 cut(s)	1199
RseI	CAYNNNNRTG	2 cut(s)	516, 993
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	580
SaqAI	TTAA	5 cut(s)	1083, 1116, 1131, 1212, 1277
SatI	GCNGC	3 cut(s)	72, 119, 656
Sau3AI	GATC	3 cut(s)	794, 1140, 1255
Sau96I	GGNCC	2 cut(s)	280, 1455
SchI	GAGTC	2 cut(s)	1343, 1509
ScrFI	CCNGG	4 cut(s)	76, 206, 451, 1453
SduI	GDGCHC	2 cut(s)	132, 899
SfcI	CTRYAG	2 cut(s)	474, 568
SfuI	TTCGAA	1 cut(s)	138
SgrAI	CRCCGGYG	1 cut(s)	106
SinI	GGWCC	1 cut(s)	1455
SmiMI	CAYNNNNRTG	2 cut(s)	516, 993
SmlI	CTYRAG	2 cut(s)	591, 1082
SmoI	CTYRAG	2 cut(s)	591, 1082
SphI	GCATGC	1 cut(s)	716
SseBI	AGGCCT	1 cut(s)	784
SsiI	CCGC	8 cut(s)	71, 118, 121, 144, 278, 312, 1247, 1504
SspMI	CTAG	4 cut(s)	188, 1023, 1149, 1507
SstI	GAGCTC	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	784
StyD4I	CCNGG	4 cut(s)	74, 204, 449, 1451
TaaI	ACNGT	5 cut(s)	554, 970, 1036, 1198, 1419
TaqI	TCGA	3 cut(s)	138, 693, 826
TauI	GCSGC	2 cut(s)	74, 121
TfiI	GAWTC	3 cut(s)	140, 287, 1243
Tru1I	TTAA	5 cut(s)	1083, 1116, 1131, 1212, 1277
Tru9I	TTAA	5 cut(s)	1083, 1116, 1131, 1212, 1277
TscAI	CASTG	9 cut(s)	559, 804, 852, 882, 1039, 1201, 1347, 1422, 1468
TseFI	GTSAC	2 cut(s)	172, 623
TseI	GCWGC	1 cut(s)	655
Tsp45I	GTSAC	2 cut(s)	172, 623
TspDTI	ATGAA	5 cut(s)	344, 482, 658, 908, 936
TspRI	CASTG	9 cut(s)	559, 804, 852, 882, 1039, 1201, 1347, 1422, 1468
Vha464I	CTTAAG	1 cut(s)	1082
VpaK11BI	GGWCC	1 cut(s)	1455
XapI	RAATTY	6 cut(s)	830, 858, 914, 923, 1112, 1208
XceI	RCATGY	2 cut(s)	545, 716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1201
XmnI	GAANNNNTTC	1 cut(s)	1373
XspI	CTAG	4 cut(s)	188, 1023, 1149, 1507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.