RLG00000003730

Protein TPX2-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005322
Physical Location & Seq
Forward (+)
52148476 .. 52153696
5221 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003730

Sequence Viewer

Length: 1515 bp
ATGGAAATGGAGGAAGATATGGAGGTGGAGCAAGTGTTTACGGCGCACGAAGTGGACATTGACTACGAGTTTGACGCGGCCAGGTTCTTTGATTTTAGTCTGCAGGAGACGCCGGTGGAGGCGCGGCGAGCTGAGCTCTGGTTCGAATCCGCCAAGAGCTATCCTCCCTCTCCTGTTGTGACAAGGATGATACTAGGAGGGGACATTCTCCTGGGAAATGTGAATACCTCCCCAAAATCTAAAGATGTGGAGAATACAAATGGCATTGGCTGTAATATCGGCGCCGGCCAAGAATCTTGTGCAATGGATGTAAATGGCAGAGATTGTGAAGGAATGAATAAAGGGATTTTCGGCAACATGCAAAGAGTTCTAAATCAATCACATGGAGCAGGGTTGACATTCAATCATTCAAAAGGTCAAAATAACTCTTCAGTAAAGCCATCTTTCCCCAGGAAATCAACTTTGATGAAACCTACAGCAAGTCAACTTGCTAAGCAAAATCACCCCCCTCATATTGGTGGTTCCAGATTTCAGACGCTACATGTTCAAAACAGTGATAAGAGCTTCTGTAGCTCTTCTGGAGTTGAAACTCAAGCTACCAAAAGGCAGAAGTTAGAGGGAGGTCACTCGCAAAAGGTTACTACTGAAGCAATGCAGCAAACTAATTTCATCCACAAGGCACCTAAAAAGGTCGAAACTTTTGATAAGACACATGCCAAGTTGAAAATTACTATTCCAATAGAGCCTGACTTTGAAACGACATATAGGGCGCAAAGAATAAGGCCTAAGAATGGATCAGTGTTGGAACAAGTGCCATCAGCTCCTCGAAAATTCAAAGCCCGTCCACTGAACAAAAAAATTTTTGAGGCTCCCACACTGCCACTTCCAAAGAGGAGCACTCCAAAATTGCCAGAATTTCATGAATTTCACCTGAAGACAATGGAAAGAGCTATGCAAAATACATCTACTGTTCCATTATCCTCACATCATTTCAATGGTCAAGAGAAGGTGTTGGACAAACCTAGTGCTTCCACTGTTTCAGGAAATGGAAACAGAGAACCCAGAAGGCCAAGTAAATTGGATGGTCTTAAGCAGGATGGAAGTGATGTAATGCCAAAATTTAAAGCTCGTCCTCTTAATAAAAAGATCTTTTCTAGCAAAGGGGATATCGGTGTTTTCTGGAATAGCAAAAGAGAAACCACTGTACCAATGGAATTTAATTTTCAGACAGAGAGGAGAACTCAGCAGATTCCGCCAACTGATCTTTTCAGTAAGCTCTCTTTAACATCTGAATTCCAACCAAATAATGGAACTCAGTTGAACTTGCCCCAGCCAACATCTGTATCAGTGAAGGACTCAAAAGAAAATAGAGCGAATAATTTCCAACCAGAACATAAGATAATGGTAAAAGAGAAATCTTCACTGTTTGGTGGAAAGCAAGCTCTATTTGGGGGTGCCCGGTCCATCAGTGATGTTGATAACAAATCAAGGATGAGGAGTTTGGGAGTCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

505

Amino Acids

56.33

Weight (kDa)

9.6

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 241 - 408 4.8e-45 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 281, 679, 1454
AccB7I CCANNNNNTGG 1 cut(s) 1307
AccII CGCG 2 cut(s) 77, 124
AciI CCGC 5 cut(s) 77, 124, 150, 1253, 1510
AclWI GGATC 1 cut(s) 802
AcoI YGGCCR 2 cut(s) 78, 286
AcsI RAATTY 7 cut(s) 830, 858, 914, 923, 1118, 1214, 1292
AcuI CTGAAG 3 cut(s) 414, 666, 953
AcyI GRCGYC 2 cut(s) 110, 282
AdeI CACNNNGTG 1 cut(s) 52
AfaI GTAC 1 cut(s) 1206
AfiI CCNNNNNNNGG 3 cut(s) 515, 791, 1307
AflII CTTAAG 1 cut(s) 1088
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 9 cut(s) 403, 411, 548, 587, 724, 755, 835, 994, 1321
AjnI CCWGG 3 cut(s) 80, 210, 449
Alw21I GWGCWC 2 cut(s) 138, 899
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 802
AoxI GGCC 4 cut(s) 78, 286, 782, 1067
ApeKI GCWGC 1 cut(s) 655
ApoI RAATTY 7 cut(s) 830, 858, 914, 923, 1118, 1214, 1292
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
Asp700I GAANNNNTTC 1 cut(s) 1379
AspLEI GCGC 4 cut(s) 46, 124, 284, 772
AspS9I GGNCC 1 cut(s) 1461
AsuC2I CCSGG 1 cut(s) 1459
AsuHPI GGTGA 2 cut(s) 494, 920
AsuII TTCGAA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 1461
BaeGI GKGCMC 1 cut(s) 1459
BaeI ACNNNNGTAYC 4 cut(s) 1188, 1221, 1326, 1359
BanI GGYRCC 3 cut(s) 281, 679, 1454
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 941
Bbv12I GWGCWC 2 cut(s) 138, 899
BbvI GCAGC 1 cut(s) 667
BccI CCATC 5 cut(s) 448, 823, 1076, 1091, 1472
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 3 cut(s) 82, 212, 451
BcnI CCSGG 1 cut(s) 1459
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 4 cut(s) 194, 1023, 1155, 1513
BfmI CTRYAG 3 cut(s) 101, 474, 568
BfoI RGCGCY 1 cut(s) 285
BfrI CTTAAG 1 cut(s) 1088
BglII AGATCT 1 cut(s) 1146
BisI GCNGC 3 cut(s) 78, 125, 656
BlpI GCTNAGC 2 cut(s) 132, 492
BlsI GCNGC 3 cut(s) 79, 126, 657
Bme1390I CCNGG 4 cut(s) 82, 212, 451, 1459
Bme18I GGWCC 1 cut(s) 1461
BmgT120I GGNCC 1 cut(s) 1461
BmiI GGNNCC 5 cut(s) 283, 523, 681, 870, 1456
BmrFI CCNGG 4 cut(s) 82, 212, 451, 1459
BpiI GAAGAC 1 cut(s) 941
BplI GAGNNNNNCTC 8 cut(s) 120, 152, 148, 180, 883, 915, 1225, 1257
BpmI CTGGAG 1 cut(s) 600
Bpu1102I GCTNAGC 2 cut(s) 132, 492
Bpu14I TTCGAA 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 576
BpuMI CCSGG 1 cut(s) 1459
BsaHI GRCGYC 2 cut(s) 110, 282
BsaJI CCNNGG 2 cut(s) 211, 449
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 3 cut(s) 515, 791, 1307
Bse118I RCCGGY 2 cut(s) 112, 284
Bse3DI GCAATG 2 cut(s) 309, 657
BseBI CCWGG 3 cut(s) 82, 212, 451
BseDI CCNNGG 2 cut(s) 211, 449
BseGI GGATG 6 cut(s) 192, 313, 669, 1087, 1102, 1497
BseLI CCNNNNNNNGG 3 cut(s) 515, 791, 1307
BseMI GCAATG 2 cut(s) 309, 657
BseMII CTCAG 3 cut(s) 123, 1256, 1328
BseRI GAGGAG 4 cut(s) 813, 907, 1249, 1510
BseSI GKGCMC 1 cut(s) 1459
BseXI GCAGC 1 cut(s) 667
BseYI CCCAGC 1 cut(s) 1329
Bsh1236I CGCG 2 cut(s) 77, 124
BshFI GGCC 4 cut(s) 80, 288, 784, 1069
BshNI GGYRCC 3 cut(s) 281, 679, 1454
BsiHKAI GWGCWC 2 cut(s) 138, 899
BsiSI CCGG 3 cut(s) 113, 285, 1459
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 3 cut(s) 515, 791, 1307
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 4 cut(s) 80, 288, 784, 1069
Bsp119I TTCGAA 1 cut(s) 144
Bsp1286I GDGCHC 3 cut(s) 138, 899, 1459
Bsp143I GATC 3 cut(s) 794, 1146, 1261
Bsp1720I GCTNAGC 2 cut(s) 132, 492
BspACI CCGC 5 cut(s) 77, 124, 150, 1253, 1510
BspANI GGCC 4 cut(s) 80, 288, 784, 1069
BspCNI CTCAG 3 cut(s) 124, 1255, 1327
BspFNI CGCG 2 cut(s) 77, 124
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 5 cut(s) 283, 523, 681, 870, 1456
BspMAI CTGCAG 1 cut(s) 105
BspPI GGATC 1 cut(s) 802
BspQI GCTCTTC 1 cut(s) 580
BspT104I TTCGAA 1 cut(s) 144
BspT107I GGYRCC 3 cut(s) 281, 679, 1454
BspTI CTTAAG 1 cut(s) 1088
BsrDI GCAATG 2 cut(s) 309, 657
BsrFI RCCGGY 2 cut(s) 112, 284
BssAI RCCGGY 2 cut(s) 112, 284
BssECI CCNNGG 2 cut(s) 211, 449
BssMI GATC 3 cut(s) 794, 1146, 1261
BssNI GRCGYC 2 cut(s) 110, 282
Bst2UI CCWGG 3 cut(s) 82, 212, 451
Bst4CI ACNGT 5 cut(s) 554, 970, 1036, 1204, 1425
Bst6I CTCTTC 2 cut(s) 433, 580
BstACI GRCGYC 2 cut(s) 110, 282
BstAFI CTTAAG 1 cut(s) 1088
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 129, 286, 1440
BstDEI CTNAG 5 cut(s) 132, 492, 786, 1242, 1314
BstF5I GGATG 6 cut(s) 192, 313, 669, 1087, 1102, 1497
BstFNI CGCG 2 cut(s) 77, 124
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 4 cut(s) 46, 124, 284, 772
BstKTI GATC 3 cut(s) 797, 1149, 1264
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 794, 1146, 1261
BstMWI GCNNNNNNNGC 5 cut(s) 109, 128, 133, 570, 1252
BstNI CCWGG 3 cut(s) 82, 212, 451
BstNSI RCATGY 3 cut(s) 361, 545, 716
BstSCI CCNGG 4 cut(s) 80, 210, 449, 1457
BstSFI CTRYAG 3 cut(s) 101, 474, 568
BstSLI GKGCMC 1 cut(s) 1459
BstUI CGCG 2 cut(s) 77, 124
BstV1I GCAGC 1 cut(s) 667
BstV2I GAAGAC 1 cut(s) 941
BstX2I RGATCY 1 cut(s) 1146
BstYI RGATCY 1 cut(s) 1146
BsuRI GGCC 4 cut(s) 80, 288, 784, 1069
BtsCI GGATG 6 cut(s) 192, 313, 669, 1087, 1102, 1497
BtsI GCAGTG 1 cut(s) 875
BtsIMutI CAGTG 9 cut(s) 559, 804, 845, 875, 1032, 1200, 1353, 1421, 1474
Cac8I GCNNGC 3 cut(s) 129, 286, 1440
CciI TCATGA 1 cut(s) 919
CfoI GCGC 4 cut(s) 46, 124, 284, 772
Cfr10I RCCGGY 2 cut(s) 112, 284
Cfr13I GGNCC 1 cut(s) 1461
CseI GACGC 3 cut(s) 83, 118, 544
Csp6I GTAC 1 cut(s) 1205
CviAII CATG 5 cut(s) 358, 383, 542, 713, 920
CviQI GTAC 1 cut(s) 1205
DdeI CTNAG 5 cut(s) 132, 492, 786, 1242, 1314
DinI GGCGCC 1 cut(s) 283
DpnI GATC 3 cut(s) 796, 1148, 1263
DpnII GATC 3 cut(s) 794, 1146, 1261
DraI TTTAAA 1 cut(s) 1123
DraIII CACNNNGTG 1 cut(s) 52
EaeI YGGCCR 2 cut(s) 78, 286
Eam1104I CTCTTC 2 cut(s) 433, 580
EarI CTCTTC 2 cut(s) 433, 580
EciI GGCGGA 2 cut(s) 139, 1242
Ecl136II GAGCTC 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 784
Eco24I GRGCYC 1 cut(s) 138
Eco32I GATATC 1 cut(s) 1168
Eco47I GGWCC 1 cut(s) 1461
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 3 cut(s) 414, 666, 953
EcoICRI GAGCTC 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 1292
EcoRII CCWGG 3 cut(s) 80, 210, 449
EcoRV GATATC 1 cut(s) 1168
EcoT38I GRGCYC 1 cut(s) 138
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 5 cut(s) 361, 386, 545, 716, 923
FaqI GGGAC 1 cut(s) 215
FatI CATG 5 cut(s) 357, 382, 541, 712, 919
Fnu4HI GCNGC 3 cut(s) 78, 125, 656
FokI GGATG 6 cut(s) 199, 320, 656, 1094, 1109, 1504
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 3 cut(s) 78, 125, 656
FspBI CTAG 4 cut(s) 194, 1023, 1155, 1513
GlaI GCGC 4 cut(s) 45, 123, 283, 771
GluI GCNGC 3 cut(s) 78, 125, 656
GsaI CCCAGC 1 cut(s) 1333
GsuI CTGGAG 1 cut(s) 600
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 4 cut(s) 80, 288, 784, 1069
HapII CCGG 3 cut(s) 113, 285, 1459
HgaI GACGC 3 cut(s) 83, 118, 544
HhaI GCGC 4 cut(s) 46, 124, 284, 772
Hin1I GRCGYC 2 cut(s) 110, 282
Hin1II CATG 5 cut(s) 361, 386, 545, 716, 923
Hin6I GCGC 4 cut(s) 44, 122, 282, 770
HinP1I GCGC 4 cut(s) 44, 122, 282, 770
HincII GTYRAC 2 cut(s) 396, 485
HindII GTYRAC 2 cut(s) 396, 485
HinfI GANTC 5 cut(s) 146, 293, 1249, 1355, 1506
HpaII CCGG 3 cut(s) 113, 285, 1459
HphI GGTGA 2 cut(s) 494, 920
Hpy166II GTNNAC 5 cut(s) 39, 55, 396, 485, 845
Hpy188I TCNGA 3 cut(s) 534, 1227, 1291
Hpy188III TCNNGA 6 cut(s) 525, 579, 920, 1001, 1041, 1180
Hpy8I GTNNAC 5 cut(s) 39, 55, 396, 485, 845
HpyAV CCTTC 4 cut(s) 323, 1000, 1059, 1345
HpyCH4III ACNGT 5 cut(s) 554, 970, 1036, 1204, 1425
HpyCH4V TGCA 5 cut(s) 103, 302, 361, 655, 955
HpyF10VI GCNNNNNNNGC 5 cut(s) 109, 128, 133, 570, 1252
HpyF3I CTNAG 5 cut(s) 132, 492, 786, 1242, 1314
Hsp92I GRCGYC 2 cut(s) 110, 282
Hsp92II CATG 5 cut(s) 361, 386, 545, 716, 923
HspAI GCGC 4 cut(s) 44, 122, 282, 770
KasI GGCGCC 1 cut(s) 281
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Kzo9I GATC 3 cut(s) 794, 1146, 1261
LguI GCTCTTC 1 cut(s) 580
LmnI GCTCC 5 cut(s) 28, 386, 826, 874, 894
Lsp1109I GCAGC 1 cut(s) 667
MaeI CTAG 4 cut(s) 194, 1023, 1155, 1513
MaeIII GTNAC 3 cut(s) 178, 623, 637
MalI GATC 3 cut(s) 796, 1148, 1263
MboI GATC 3 cut(s) 794, 1146, 1261
MboII GAAGA 5 cut(s) 26, 420, 567, 946, 1410
MflI RGATCY 1 cut(s) 1146
MhlI GDGCHC 3 cut(s) 138, 899, 1459
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 2 cut(s) 1349, 1515
MmeI TCCRAC 4 cut(s) 783, 993, 1321, 1408
MroNI GCCGGC 1 cut(s) 284
MroXI GAANNNNTTC 1 cut(s) 1379
MseI TTAA 5 cut(s) 1089, 1122, 1137, 1218, 1283
MslI CAYNNNNRTG 2 cut(s) 516, 993
MspCI CTTAAG 1 cut(s) 1088
MspI CCGG 3 cut(s) 113, 285, 1459
MspR9I CCNGG 4 cut(s) 82, 212, 451, 1459
MvaI CCWGG 3 cut(s) 82, 212, 451
MvnI CGCG 2 cut(s) 77, 124
MwoI GCNNNNNNNGC 5 cut(s) 109, 128, 133, 570, 1252
NaeI GCCGGC 1 cut(s) 286
NarI GGCGCC 1 cut(s) 282
NciI CCSGG 1 cut(s) 1459
NdeII GATC 3 cut(s) 794, 1146, 1261
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 5 cut(s) 361, 386, 545, 716, 923
NlaIV GGNNCC 5 cut(s) 283, 523, 681, 870, 1456
NmuCI GTSAC 2 cut(s) 178, 623
NspI RCATGY 3 cut(s) 361, 545, 716
NspV TTCGAA 1 cut(s) 144
PagI TCATGA 1 cut(s) 919
PceI AGGCCT 1 cut(s) 784
PciI ACATGT 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 580
PdiI GCCGGC 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 1379
PfeI GAWTC 3 cut(s) 146, 293, 1249
PflMI CCANNNNNTGG 1 cut(s) 1307
PkrI GCNGC 3 cut(s) 79, 126, 657
PleI GAGTC 2 cut(s) 1349, 1514
PluTI GGCGCC 1 cut(s) 285
PpsI GAGTC 2 cut(s) 1349, 1514
PscI ACATGT 1 cut(s) 541
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 3 cut(s) 80, 210, 449
PspFI CCCAGC 1 cut(s) 1329
PspGI CCWGG 3 cut(s) 80, 210, 449
PspN4I GGNNCC 5 cut(s) 283, 523, 681, 870, 1456
PspPI GGNCC 1 cut(s) 1461
PstI CTGCAG 1 cut(s) 105
PsuI RGATCY 1 cut(s) 1146
RsaI GTAC 1 cut(s) 1206
RsaNI GTAC 1 cut(s) 1205
RseI CAYNNNNRTG 2 cut(s) 516, 993
SacI GAGCTC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 580
SaqAI TTAA 5 cut(s) 1089, 1122, 1137, 1218, 1283
SatI GCNGC 3 cut(s) 78, 125, 656
Sau3AI GATC 3 cut(s) 794, 1146, 1261
Sau96I GGNCC 1 cut(s) 1461
SchI GAGTC 2 cut(s) 1349, 1515
ScrFI CCNGG 4 cut(s) 82, 212, 451, 1459
SduI GDGCHC 3 cut(s) 138, 899, 1459
SfcI CTRYAG 3 cut(s) 101, 474, 568
SfoI GGCGCC 1 cut(s) 283
SfuI TTCGAA 1 cut(s) 144
SgrAI CRCCGGYG 1 cut(s) 112
SinI GGWCC 1 cut(s) 1461
SmiMI CAYNNNNRTG 2 cut(s) 516, 993
SmlI CTYRAG 2 cut(s) 591, 1088
SmoI CTYRAG 2 cut(s) 591, 1088
SseBI AGGCCT 1 cut(s) 784
SsiI CCGC 5 cut(s) 77, 124, 150, 1253, 1510
SspDI GGCGCC 1 cut(s) 281
SspMI CTAG 4 cut(s) 194, 1023, 1155, 1513
SstI GAGCTC 1 cut(s) 138
StuI AGGCCT 1 cut(s) 784
StyD4I CCNGG 4 cut(s) 80, 210, 449, 1457
TaaI ACNGT 5 cut(s) 554, 970, 1036, 1204, 1425
TaqI TCGA 3 cut(s) 144, 693, 826
TauI GCSGC 2 cut(s) 80, 127
TfiI GAWTC 3 cut(s) 146, 293, 1249
Tru1I TTAA 5 cut(s) 1089, 1122, 1137, 1218, 1283
Tru9I TTAA 5 cut(s) 1089, 1122, 1137, 1218, 1283
TscAI CASTG 9 cut(s) 559, 804, 852, 882, 1039, 1207, 1353, 1428, 1474
TseFI GTSAC 2 cut(s) 178, 623
TseI GCWGC 1 cut(s) 655
Tsp45I GTSAC 2 cut(s) 178, 623
TspDTI ATGAA 5 cut(s) 350, 482, 658, 908, 936
TspRI CASTG 9 cut(s) 559, 804, 852, 882, 1039, 1207, 1353, 1428, 1474
Van91I CCANNNNNTGG 1 cut(s) 1307
Vha464I CTTAAG 1 cut(s) 1088
VpaK11BI GGWCC 1 cut(s) 1461
XapI RAATTY 7 cut(s) 830, 858, 914, 923, 1118, 1214, 1292
XceI RCATGY 3 cut(s) 361, 545, 716
XcmI CCANNNNNNNNNTGG 2 cut(s) 1207, 1304
XmnI GAANNNNTTC 1 cut(s) 1379
XspI CTAG 4 cut(s) 194, 1023, 1155, 1513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.