Rh7CG195500

Protein TPX2-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005322
Physical Location & Seq
Reverse (-)
17176213 .. 17180603
4391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG195500.1

Sequence Viewer

Length: 1515 bp
ATGGAAATGGAGGAAGATATGGAGGTGGAGCAAGTGTTTACGGCGCACGAAGTGGACATTGACTACGAGTTTGACGCGGCCAGGTTCTTTGATTTTAGTCGGCAGGAGACGCCGGTGGAGGCGCGGCGGGCTGAGCTCTGGTTCGAATCCGCCAAGAGCTATCCTCCTTCTCCTGTTGTGACAAGGATGATACTAGGAGGGGACATTCTCCTGGGAAATGTGAATACCTCCCCAAAATCTAAAGATGTGGAGAATACAAATGGCATTGGCTGTAATATCGGCGCGGGCCAAGAATCGTGTGCAATGGATGTAATTAGCGGAGATTGTGAAGGAATGAATAAAGGGATTTTCGGCAACTTGCAAAGAGTTCTAAATCAATCACATGGAGCAGGCACAGGGTTGACATTCAATCATTCAAAAGGTCAAAATAACTCTTCAGTAAAGCCATCTTTCCCCAGGAAATCAACTTTGATGAAACCTACAGCAAGTCAACTTGCTAAGCAAAATCGCCTCCCTCATATTGGTGGTTCCAGATTTCAGACGCTACATGTTCAAAACAGTGATAAGAGCTTCTGTAGCTCTTCTGGAGTTGAAACTCAAGCTACCAAAAGGCAGAAGTTAGAGGGAGGTCACTCGCAAAAGGTTACTACTGAAGCAATGCAGCAAACTAATTTCATCCACAAGGCACCTAAAAAGGTCGAAACTTTTGATAAGACACATGCCAAGTTGAAAATTACTATTCCAATAGAGCCTGACTTTGAAACGACATATAGGGCGCAAAGAATAAGGCCTAAGAATGGATCAGTGTTGGAACAAGTGCCATCAGCTCCTCGAAAATTCAAAGCCCGTCCACTGAACAAAAAAATTTTTGAGGCTCCCTCACTGCCACTTCCAAAGAGGAGCACTCCAAAGTTGCCAGAATTTCATGAATTTCACCTGAAGACAATGGAAAGAGCTATGCAAAATACATCTACTGTTCCATTATCCTCACATCATTTCAATGGTCAAGAGAAGGTGTTGGACAAACCTAGTGCTTCCACTGTTGCAGGAAATGGAAACAGAGAACCCAGAAGGCCGAGTAAATGTCTCAAGCAGGATGGAAGTGATGTAATGCCAAAATTTAAAGCTCGTCCTCTTAATAAAAAGATCTTTTCTAGCAAAGGGGATATCGGTGTTTTCCGGAATAGCAAAAGAGAAACCACTGTATCAATGGAATTTAATTTTCAGACAGAGAGGAGAACTCAGCAGATTCCGCCAACTGATCTTTTCAGTAAGCTCTGTTTAACATCTGAACTCCAGCCAAATAATGGAACTCAGTTGAACTTGCCTCAGCCAACATCTGTATCAGTGAAGGACTCAAAAGAAAATAGAGCGAATAATTTCCAACCAGAACATAAGATAATGGTAAAAGAGAAATCTTCACTGTTTGGTGGAAAGCAAGCTCTATTTGGGGGTGCCAGGTCCATCAGTGATGTTGATAACAAATCAAGGATGAGGAGTTTGGGAGTCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

504

Amino Acids

56.21

Weight (kDa)

9.66

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 243 - 408 2.6e-44 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 685, 1454
AccB7I CCANNNNNTGG 1 cut(s) 1307
AccII CGCG 3 cut(s) 77, 124, 284
AccIII TCCGGA 1 cut(s) 1179
AciI CCGC 8 cut(s) 77, 124, 127, 150, 284, 318, 1253, 1510
AclWI GGATC 1 cut(s) 808
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 6 cut(s) 836, 864, 920, 929, 1118, 1214
AcuI CTGAAG 3 cut(s) 420, 672, 959
AcyI GRCGYC 1 cut(s) 110
AdeI CACNNNGTG 1 cut(s) 52
AfiI CCNNNNNNNGG 3 cut(s) 521, 797, 1307
AflIII ACRYGT 1 cut(s) 547
AgsI TTSAA 9 cut(s) 409, 417, 554, 593, 730, 761, 841, 1000, 1321
AjnI CCWGG 4 cut(s) 80, 210, 455, 1457
Alw21I GWGCWC 2 cut(s) 138, 905
Alw26I GTCTC 2 cut(s) 101, 1091
AlwI GGATC 1 cut(s) 808
Aor13HI TCCGGA 1 cut(s) 1179
AoxI GGCC 4 cut(s) 78, 286, 788, 1073
ApeKI GCWGC 1 cut(s) 661
ApoI RAATTY 6 cut(s) 836, 864, 920, 929, 1118, 1214
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
Asp700I GAANNNNTTC 1 cut(s) 1379
AspLEI GCGC 4 cut(s) 46, 124, 284, 778
AspS9I GGNCC 2 cut(s) 286, 1461
AsuHPI GGTGA 1 cut(s) 926
AsuII TTCGAA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 1461
BaeI ACNNNNGTAYC 4 cut(s) 1188, 1221, 1326, 1359
BanI GGYRCC 2 cut(s) 685, 1454
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 947
Bbv12I GWGCWC 2 cut(s) 138, 905
BbvCI CCTCAGC 1 cut(s) 1329
BbvI GCAGC 1 cut(s) 673
BccI CCATC 4 cut(s) 454, 829, 1091, 1472
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 4 cut(s) 82, 212, 457, 1459
BcoDI GTCTC 2 cut(s) 101, 1091
BfaI CTAG 4 cut(s) 194, 1029, 1155, 1513
BfmI CTRYAG 2 cut(s) 480, 574
BglII AGATCT 1 cut(s) 1146
BisI GCNGC 3 cut(s) 78, 125, 662
BlpI GCTNAGC 2 cut(s) 132, 498
BlsI GCNGC 3 cut(s) 79, 126, 663
Bme1390I CCNGG 4 cut(s) 82, 212, 457, 1459
Bme18I GGWCC 1 cut(s) 1461
BmgT120I GGNCC 2 cut(s) 286, 1461
BmiI GGNNCC 4 cut(s) 529, 687, 876, 1456
BmrFI CCNGG 4 cut(s) 82, 212, 457, 1459
BpiI GAAGAC 1 cut(s) 947
BplI GAGNNNNNCTC 8 cut(s) 148, 180, 863, 895, 889, 921, 1225, 1257
BpmI CTGGAG 2 cut(s) 606, 1280
Bpu10I CCTNAGC 1 cut(s) 1329
Bpu1102I GCTNAGC 2 cut(s) 132, 498
Bpu14I TTCGAA 1 cut(s) 144
BpuEI CTTGAG 2 cut(s) 582, 1073
BsaHI GRCGYC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 211, 455
BsaWI WCCGGW 1 cut(s) 1179
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 3 cut(s) 521, 797, 1307
Bse118I RCCGGY 1 cut(s) 112
Bse3DI GCAATG 2 cut(s) 309, 663
BseAI TCCGGA 1 cut(s) 1179
BseBI CCWGG 4 cut(s) 82, 212, 457, 1459
BseDI CCNNGG 2 cut(s) 211, 455
BseGI GGATG 5 cut(s) 192, 313, 675, 1102, 1497
BseLI CCNNNNNNNGG 3 cut(s) 521, 797, 1307
BseMI GCAATG 2 cut(s) 309, 663
BseMII CTCAG 4 cut(s) 123, 1256, 1328, 1343
BseRI GAGGAG 4 cut(s) 819, 913, 1249, 1510
BseXI GCAGC 1 cut(s) 673
Bsh1236I CGCG 3 cut(s) 77, 124, 284
BshFI GGCC 4 cut(s) 80, 288, 790, 1075
BshNI GGYRCC 2 cut(s) 685, 1454
BsiHKAI GWGCWC 2 cut(s) 138, 905
BsiSI CCGG 2 cut(s) 113, 1180
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 3 cut(s) 521, 797, 1307
BsmAI GTCTC 2 cut(s) 101, 1091
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 4 cut(s) 80, 288, 790, 1075
Bsp119I TTCGAA 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 138, 905
Bsp13I TCCGGA 1 cut(s) 1179
Bsp143I GATC 3 cut(s) 800, 1146, 1261
Bsp1720I GCTNAGC 2 cut(s) 132, 498
BspACI CCGC 8 cut(s) 77, 124, 127, 150, 284, 318, 1253, 1510
BspANI GGCC 4 cut(s) 80, 288, 790, 1075
BspCNI CTCAG 4 cut(s) 124, 1255, 1327, 1342
BspEI TCCGGA 1 cut(s) 1179
BspFNI CGCG 3 cut(s) 77, 124, 284
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 4 cut(s) 529, 687, 876, 1456
BspPI GGATC 1 cut(s) 808
BspQI GCTCTTC 1 cut(s) 586
BspT104I TTCGAA 1 cut(s) 144
BspT107I GGYRCC 2 cut(s) 685, 1454
BsrDI GCAATG 2 cut(s) 309, 663
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 211, 455
BssMI GATC 3 cut(s) 800, 1146, 1261
BssNI GRCGYC 1 cut(s) 110
Bst2UI CCWGG 4 cut(s) 82, 212, 457, 1459
Bst4CI ACNGT 5 cut(s) 560, 976, 1042, 1204, 1425
Bst6I CTCTTC 2 cut(s) 439, 586
BstACI GRCGYC 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 4 cut(s) 129, 286, 391, 1440
BstDEI CTNAG 6 cut(s) 132, 498, 792, 1242, 1314, 1329
BstF5I GGATG 5 cut(s) 192, 313, 675, 1102, 1497
BstFNI CGCG 3 cut(s) 77, 124, 284
BstHHI GCGC 4 cut(s) 46, 124, 284, 778
BstKTI GATC 3 cut(s) 803, 1149, 1264
BstMAI GTCTC 2 cut(s) 101, 1091
BstMBI GATC 3 cut(s) 800, 1146, 1261
BstMWI GCNNNNNNNGC 5 cut(s) 109, 128, 133, 576, 1252
BstNI CCWGG 4 cut(s) 82, 212, 457, 1459
BstNSI RCATGY 2 cut(s) 551, 722
BstSCI CCNGG 4 cut(s) 80, 210, 455, 1457
BstSFI CTRYAG 2 cut(s) 480, 574
BstUI CGCG 3 cut(s) 77, 124, 284
BstV1I GCAGC 1 cut(s) 673
BstV2I GAAGAC 1 cut(s) 947
BstX2I RGATCY 1 cut(s) 1146
BstYI RGATCY 1 cut(s) 1146
BsuRI GGCC 4 cut(s) 80, 288, 790, 1075
BtsCI GGATG 5 cut(s) 192, 313, 675, 1102, 1497
BtsI GCAGTG 1 cut(s) 881
BtsIMutI CAGTG 9 cut(s) 565, 810, 851, 881, 1038, 1200, 1353, 1421, 1474
Cac8I GCNNGC 4 cut(s) 129, 286, 391, 1440
CciI TCATGA 1 cut(s) 925
CfoI GCGC 4 cut(s) 46, 124, 284, 778
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 286, 1461
CseI GACGC 3 cut(s) 83, 118, 550
CviAII CATG 4 cut(s) 383, 548, 719, 926
DdeI CTNAG 6 cut(s) 132, 498, 792, 1242, 1314, 1329
DpnI GATC 3 cut(s) 802, 1148, 1263
DpnII GATC 3 cut(s) 800, 1146, 1261
DraI TTTAAA 1 cut(s) 1123
DraIII CACNNNGTG 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 439, 586
EarI CTCTTC 2 cut(s) 439, 586
EciI GGCGGA 2 cut(s) 139, 1242
Ecl136II GAGCTC 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 790
Eco24I GRGCYC 1 cut(s) 138
Eco32I GATATC 1 cut(s) 1168
Eco47I GGWCC 1 cut(s) 1461
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 3 cut(s) 420, 672, 959
EcoICRI GAGCTC 1 cut(s) 136
EcoRII CCWGG 4 cut(s) 80, 210, 455, 1457
EcoRV GATATC 1 cut(s) 1168
EcoT38I GRGCYC 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 4 cut(s) 386, 551, 722, 929
FaqI GGGAC 1 cut(s) 215
FatI CATG 4 cut(s) 382, 547, 718, 925
FauI CCCGC 2 cut(s) 120, 277
Fnu4HI GCNGC 3 cut(s) 78, 125, 662
FokI GGATG 5 cut(s) 199, 320, 662, 1109, 1504
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 3 cut(s) 78, 125, 662
FspBI CTAG 4 cut(s) 194, 1029, 1155, 1513
GlaI GCGC 4 cut(s) 45, 123, 283, 777
GluI GCNGC 3 cut(s) 78, 125, 662
GsuI CTGGAG 2 cut(s) 606, 1280
HaeIII GGCC 4 cut(s) 80, 288, 790, 1075
HapII CCGG 2 cut(s) 113, 1180
HgaI GACGC 3 cut(s) 83, 118, 550
HhaI GCGC 4 cut(s) 46, 124, 284, 778
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 4 cut(s) 386, 551, 722, 929
Hin6I GCGC 4 cut(s) 44, 122, 282, 776
HinP1I GCGC 4 cut(s) 44, 122, 282, 776
HincII GTYRAC 2 cut(s) 402, 491
HindII GTYRAC 2 cut(s) 402, 491
HinfI GANTC 5 cut(s) 146, 293, 1249, 1355, 1506
HpaII CCGG 2 cut(s) 113, 1180
HphI GGTGA 1 cut(s) 926
Hpy166II GTNNAC 5 cut(s) 39, 55, 402, 491, 851
Hpy188I TCNGA 3 cut(s) 540, 1227, 1291
Hpy188III TCNNGA 5 cut(s) 531, 585, 926, 1007, 1180
Hpy8I GTNNAC 5 cut(s) 39, 55, 402, 491, 851
HpyAV CCTTC 5 cut(s) 177, 323, 1006, 1065, 1345
HpyCH4III ACNGT 5 cut(s) 560, 976, 1042, 1204, 1425
HpyCH4V TGCA 5 cut(s) 302, 361, 661, 961, 1046
HpyF10VI GCNNNNNNNGC 5 cut(s) 109, 128, 133, 576, 1252
HpyF3I CTNAG 6 cut(s) 132, 498, 792, 1242, 1314, 1329
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 4 cut(s) 386, 551, 722, 929
HspAI GCGC 4 cut(s) 44, 122, 282, 776
Kpn2I TCCGGA 1 cut(s) 1179
Kzo9I GATC 3 cut(s) 800, 1146, 1261
LguI GCTCTTC 1 cut(s) 586
LmnI GCTCC 5 cut(s) 28, 386, 832, 880, 900
Lsp1109I GCAGC 1 cut(s) 673
MaeI CTAG 4 cut(s) 194, 1029, 1155, 1513
MaeIII GTNAC 3 cut(s) 178, 629, 643
MalI GATC 3 cut(s) 802, 1148, 1263
MboI GATC 3 cut(s) 800, 1146, 1261
MboII GAAGA 5 cut(s) 26, 426, 573, 952, 1410
MflI RGATCY 1 cut(s) 1146
MhlI GDGCHC 2 cut(s) 138, 905
MlyI GAGTC 2 cut(s) 1349, 1515
MmeI TCCRAC 3 cut(s) 789, 999, 1408
MroI TCCGGA 1 cut(s) 1179
MroXI GAANNNNTTC 1 cut(s) 1379
MseI TTAA 4 cut(s) 1122, 1137, 1218, 1283
MslI CAYNNNNRTG 2 cut(s) 522, 999
MspI CCGG 2 cut(s) 113, 1180
MspR9I CCNGG 4 cut(s) 82, 212, 457, 1459
MvaI CCWGG 4 cut(s) 82, 212, 457, 1459
MvnI CGCG 3 cut(s) 77, 124, 284
MwoI GCNNNNNNNGC 5 cut(s) 109, 128, 133, 576, 1252
NdeII GATC 3 cut(s) 800, 1146, 1261
NlaIII CATG 4 cut(s) 386, 551, 722, 929
NlaIV GGNNCC 4 cut(s) 529, 687, 876, 1456
NmeAIII GCCGAG 1 cut(s) 1101
NmuCI GTSAC 2 cut(s) 178, 629
NspI RCATGY 2 cut(s) 551, 722
NspV TTCGAA 1 cut(s) 144
PagI TCATGA 1 cut(s) 925
PceI AGGCCT 1 cut(s) 790
PciI ACATGT 1 cut(s) 547
PciSI GCTCTTC 1 cut(s) 586
PdmI GAANNNNTTC 1 cut(s) 1379
PfeI GAWTC 3 cut(s) 146, 293, 1249
PflMI CCANNNNNTGG 1 cut(s) 1307
PkrI GCNGC 3 cut(s) 79, 126, 663
PleI GAGTC 2 cut(s) 1349, 1514
PpsI GAGTC 2 cut(s) 1349, 1514
PscI ACATGT 1 cut(s) 547
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 4 cut(s) 80, 210, 455, 1457
PspGI CCWGG 4 cut(s) 80, 210, 455, 1457
PspN4I GGNNCC 4 cut(s) 529, 687, 876, 1456
PspPI GGNCC 2 cut(s) 286, 1461
PsuI RGATCY 1 cut(s) 1146
RseI CAYNNNNRTG 2 cut(s) 522, 999
SacI GAGCTC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 586
SaqAI TTAA 4 cut(s) 1122, 1137, 1218, 1283
SatI GCNGC 3 cut(s) 78, 125, 662
Sau3AI GATC 3 cut(s) 800, 1146, 1261
Sau96I GGNCC 2 cut(s) 286, 1461
SchI GAGTC 2 cut(s) 1349, 1515
ScrFI CCNGG 4 cut(s) 82, 212, 457, 1459
SduI GDGCHC 2 cut(s) 138, 905
SfcI CTRYAG 2 cut(s) 480, 574
SfuI TTCGAA 1 cut(s) 144
SgrAI CRCCGGYG 1 cut(s) 112
SinI GGWCC 1 cut(s) 1461
SmiMI CAYNNNNRTG 2 cut(s) 522, 999
SmlI CTYRAG 2 cut(s) 597, 1088
SmoI CTYRAG 2 cut(s) 597, 1088
SseBI AGGCCT 1 cut(s) 790
SsiI CCGC 8 cut(s) 77, 124, 127, 150, 284, 318, 1253, 1510
SspMI CTAG 4 cut(s) 194, 1029, 1155, 1513
SstI GAGCTC 1 cut(s) 138
StuI AGGCCT 1 cut(s) 790
StyD4I CCNGG 4 cut(s) 80, 210, 455, 1457
TaaI ACNGT 5 cut(s) 560, 976, 1042, 1204, 1425
TaqI TCGA 3 cut(s) 144, 699, 832
TauI GCSGC 2 cut(s) 80, 127
TfiI GAWTC 3 cut(s) 146, 293, 1249
Tru1I TTAA 4 cut(s) 1122, 1137, 1218, 1283
Tru9I TTAA 4 cut(s) 1122, 1137, 1218, 1283
TscAI CASTG 9 cut(s) 565, 810, 858, 888, 1045, 1207, 1353, 1428, 1474
TseFI GTSAC 2 cut(s) 178, 629
TseI GCWGC 1 cut(s) 661
Tsp45I GTSAC 2 cut(s) 178, 629
TspDTI ATGAA 5 cut(s) 350, 488, 664, 914, 942
TspRI CASTG 9 cut(s) 565, 810, 858, 888, 1045, 1207, 1353, 1428, 1474
Van91I CCANNNNNTGG 1 cut(s) 1307
VpaK11BI GGWCC 1 cut(s) 1461
XapI RAATTY 6 cut(s) 836, 864, 920, 929, 1118, 1214
XceI RCATGY 2 cut(s) 551, 722
XcmI CCANNNNNNNNNTGG 2 cut(s) 1207, 1304
XmnI GAANNNNTTC 1 cut(s) 1379
XspI CTAG 4 cut(s) 194, 1029, 1155, 1513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.