Prupe.5G083700_v2.0.a1

Protein TPX2-like isoform X1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
9636118 .. 9642048
5931 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G083700.2

Sequence Viewer

Length: 1533 bp
ATGGAAATGGAGGTTGAGCAAGTGTTTATGGCTCAAGAAGTTGACATTGACTACGAGTTCGACGCCGCTCGGTGCTTTAACTTCACCAGAGAGGAAACTCCGGCGGAGGCGAGCCGAGCCGAGCTCTGGTTCGAGTCCGCCAAAAGCTACCCGCCGTCTCCTTTTGTGACAAGGTTAGTACTAGGAGCGGACATCCTCCGGGAAAATGTAAACGTCTCCCCAAAATCCAGAGCTGTGGAGAATACGAATGACGGCGAGTGTGATATGGGTGGGGGCGAAGAAGTATGTGCAATGGATGTAAATAACAGAGATTGCGGAGGAATGAATAGAGGGATATTTGGAAATGTACAAAAAGTTCTAAATCAACCACATGGAACGGGTACAGGAATGACATTCTACAATCACTTAGCCGGTGATAAGCTAAAAGGTAAAAGTAAATCTTCTGTAAAGCCATCTTTCCCCAGGAGCTCAACTTTGATGAAACCTACAGTAAGTCAGCTCGCTAAGCAAAATCTGAAACCTCAAATTGGCGGTTCCAGATTTCAGATGCTGCATTTTGAAAACAACGAGAAGAGCTTATGTAGTTCTTCTGGGGTTGAAAGTCAAGCTGCCAAGAGGCAAAAGCTAGATGGAGGTCATTTGTGTAAGGTTACTGACACAAAGCAGCAAACAAATTTGGTTCACAAGGTGCCTAAAAAGGATGAAACTTTTGATAAAACCACTGCACATGCCAAGTTGAGACTTACTATTCCAAGAGAGCCGGACCTTGAAACAGCATCTAGGGCACATAGGATAAGGCCTAAGAATGCATCAGTGCTAGAACAAGTGACATCAGCTCATCGAAAATTCAAAGCTCGTCCATTGAACCGAAAAATTTTCGAGGCTCCTTCATTGCCACTCCCAACAAGGAGCACTCCAAAGTTGCCAGAATTTCAAGAATTTCACCTCAAGACAATGGAAAGGGCCATGCAAAATACATCTGCTGTTTCATCATCCTCACATCGTTTCAATGATCCTGAGGAGGGTTTGGACAAACCTAGTATTTCTACTGTTGCAGAAAATGGAAACAGAGAATCTAGAAGACCAAGTACGGTGGATGGTCCCAAGCAGGATGGAAATGAAGTAATGCAAAAATTCAAAGCTCGTCCTCTTAATAAAAAGATTTTATCTAGCAAAGGAGATATTGGTGTTTTCTGGAATAACAAGCGGGAAACCACTGTACCAATGGAATTTAATTTTCAGACAGAGAGGAAAAATCAGCAGTTTCCACCAACGGATCTCTTCAGTAAGCTGTCTTTGACATCTGAGCTCCAGCCAAAGAATGGATCACGGTTGAAAGTGTCTCAGCCTACATCTTTATCTACGAAGGACTCAAAAGAAAATAGATCGAATTTTTTCCAACCAGAACACAAGATAATGGTCAAAGAAAAACCTTCTCTGTTTGGTGCAAAGCAGGCTCAATTTGGGGGTGACAGGTGCACCACTGATGTTGATAACAAATCGAGGATGAGCAGGAGTTTTGGCGTCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

511

Amino Acids

57.21

Weight (kDa)

9.49

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 688
AccB7I CCANNNNNTGG 1 cut(s) 1322
AccBSI CCGCTC 2 cut(s) 68, 188
AciI CCGC 8 cut(s) 66, 104, 138, 152, 188, 315, 531, 1207
AclWI GGATC 3 cut(s) 1007, 1284, 1333
AcsI RAATTY 8 cut(s) 673, 845, 873, 929, 938, 1133, 1229, 1390
AcuI CTGAAG 1 cut(s) 1267
AcyI GRCGYC 2 cut(s) 63, 1524
AdeI CACNNNGTG 1 cut(s) 688
AfaI GTAC 5 cut(s) 180, 348, 382, 1090, 1221
AfiI CCNNNNNNNGG 4 cut(s) 126, 527, 1022, 1322
AgsI TTSAA 9 cut(s) 560, 599, 770, 850, 865, 935, 1009, 1138, 1336
AjnI CCWGG 1 cut(s) 461
Alw21I GWGCWC 5 cut(s) 126, 470, 914, 1311, 1481
Alw26I GTCTC 4 cut(s) 162, 220, 733, 1347
Alw44I GTGCAC 1 cut(s) 1477
AlwI GGATC 3 cut(s) 1007, 1284, 1333
AlwNI CAGNNNCTG 1 cut(s) 550
AoxI GGCC 2 cut(s) 797, 963
ApaLI GTGCAC 1 cut(s) 1477
ApeKI GCWGC 3 cut(s) 550, 608, 664
ApoI RAATTY 8 cut(s) 673, 845, 873, 929, 938, 1133, 1229, 1390
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
Asp700I GAANNNNTTC 1 cut(s) 1394
AspS9I GGNCC 3 cut(s) 763, 963, 1100
AsuC2I CCSGG 1 cut(s) 200
AsuHPI GGTGA 4 cut(s) 76, 425, 935, 1481
AvaII GGWCC 2 cut(s) 763, 1100
AxyI CCTNAGG 1 cut(s) 1017
BaeGI GKGCMC 2 cut(s) 787, 1481
BaeI ACNNNNGTAYC 2 cut(s) 1203, 1236
BanI GGYRCC 1 cut(s) 688
BanII GRGCYC 3 cut(s) 126, 470, 1311
BarI GAAGNNNNNNTAC 2 cut(s) 1072, 1104
BbsI GAAGAC 1 cut(s) 1087
Bbv12I GWGCWC 5 cut(s) 126, 470, 914, 1311, 1481
BbvI GCAGC 3 cut(s) 537, 595, 676
BccI CCATC 4 cut(s) 460, 623, 1091, 1106
BceAI ACGGC 2 cut(s) 139, 268
BciT130I CCWGG 1 cut(s) 463
BcnI CCSGG 1 cut(s) 200
BcoDI GTCTC 4 cut(s) 162, 220, 733, 1347
BfaI CTAG 7 cut(s) 182, 626, 780, 818, 1038, 1077, 1170
BfmI CTRYAG 1 cut(s) 486
BisI GCNGC 4 cut(s) 66, 551, 609, 665
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 4 cut(s) 67, 552, 610, 666
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 2 cut(s) 200, 463
Bme18I GGWCC 2 cut(s) 763, 1100
BmgT120I GGNCC 3 cut(s) 763, 963, 1100
BmiI GGNNCC 4 cut(s) 535, 690, 885, 1102
BmrFI CCNGG 2 cut(s) 200, 463
BmsI GCATC 3 cut(s) 537, 785, 818
BpiI GAAGAC 1 cut(s) 1087
BplI GAGNNNNNCTC 2 cut(s) 108, 140
BpmI CTGGAG 1 cut(s) 1295
Bpu1102I GCTNAGC 1 cut(s) 504
BpuEI CTTGAG 2 cut(s) 18, 932
BpuMI CCSGG 1 cut(s) 200
BsaHI GRCGYC 2 cut(s) 63, 1524
BsaJI CCNNGG 1 cut(s) 461
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 527, 1022, 1322
Bse118I RCCGGY 1 cut(s) 410
Bse21I CCTNAGG 1 cut(s) 1017
Bse3DI GCAATG 2 cut(s) 297, 890
BseBI CCWGG 1 cut(s) 463
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 7 cut(s) 192, 301, 706, 992, 1102, 1117, 1512
BseLI CCNNNNNNNGG 4 cut(s) 126, 527, 1022, 1322
BseMI GCAATG 2 cut(s) 297, 890
BseMII CTCAG 3 cut(s) 1008, 1296, 1358
BseRI GAGGAG 1 cut(s) 1034
BseSI GKGCMC 2 cut(s) 787, 1481
BseXI GCAGC 3 cut(s) 537, 595, 676
BsgI GTGCAG 1 cut(s) 708
BshFI GGCC 2 cut(s) 799, 965
BshNI GGYRCC 1 cut(s) 688
BsiHKAI GWGCWC 5 cut(s) 126, 470, 914, 1311, 1481
BsiSI CCGG 4 cut(s) 101, 199, 411, 761
BslFI GGGAC 1 cut(s) 1086
BslI CCNNNNNNNGG 4 cut(s) 126, 527, 1022, 1322
BsmAI GTCTC 4 cut(s) 162, 220, 733, 1347
BsmBI CGTCTC 2 cut(s) 162, 220
BsmFI GGGAC 1 cut(s) 1086
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 2 cut(s) 799, 965
Bsp1286I GDGCHC 6 cut(s) 126, 470, 787, 914, 1311, 1481
Bsp1407I TGTACA 1 cut(s) 346
Bsp143I GATC 4 cut(s) 1012, 1276, 1325, 1385
Bsp1720I GCTNAGC 1 cut(s) 504
BspACI CCGC 8 cut(s) 66, 104, 138, 152, 188, 315, 531, 1207
BspANI GGCC 2 cut(s) 799, 965
BspCNI CTCAG 3 cut(s) 1009, 1297, 1357
BspLI GGNNCC 4 cut(s) 535, 690, 885, 1102
BspPI GGATC 3 cut(s) 1007, 1284, 1333
BspQI GCTCTTC 1 cut(s) 566
BspT107I GGYRCC 1 cut(s) 688
BsrBI CCGCTC 2 cut(s) 68, 188
BsrDI GCAATG 2 cut(s) 297, 890
BsrFI RCCGGY 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 4 cut(s) 1012, 1276, 1325, 1385
BssNI GRCGYC 2 cut(s) 63, 1524
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 5 cut(s) 490, 1051, 1093, 1219, 1332
Bst6I CTCTTC 2 cut(s) 566, 1286
BstACI GRCGYC 2 cut(s) 63, 1524
BstAUI TGTACA 1 cut(s) 346
BstC8I GCNNGC 3 cut(s) 112, 501, 1455
BstDEI CTNAG 6 cut(s) 406, 504, 801, 1017, 1305, 1344
BstF5I GGATG 7 cut(s) 192, 301, 706, 992, 1102, 1117, 1512
BstKTI GATC 4 cut(s) 1015, 1279, 1328, 1388
BstMAI GTCTC 4 cut(s) 162, 220, 733, 1347
BstMBI GATC 4 cut(s) 1012, 1276, 1325, 1385
BstMWI GCNNNNNNNGC 4 cut(s) 116, 505, 782, 1454
BstNI CCWGG 1 cut(s) 463
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 2 cut(s) 198, 461
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 2 cut(s) 787, 1481
BstV1I GCAGC 3 cut(s) 537, 595, 676
BstV2I GAAGAC 1 cut(s) 1087
BstX2I RGATCY 1 cut(s) 1276
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 1 cut(s) 1276
Bsu36I CCTNAGG 1 cut(s) 1017
BsuRI GGCC 2 cut(s) 799, 965
BtsCI GGATG 7 cut(s) 192, 301, 706, 992, 1102, 1117, 1512
BtsI GCAGTG 1 cut(s) 720
BtsIMutI CAGTG 4 cut(s) 720, 819, 1215, 1482
Cac8I GCNNGC 3 cut(s) 112, 501, 1455
CaiI CAGNNNCTG 1 cut(s) 550
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 3 cut(s) 763, 963, 1100
CseI GACGC 2 cut(s) 71, 1513
Csp6I GTAC 5 cut(s) 179, 347, 381, 1089, 1220
CspCI CAANNNNNGTGG 4 cut(s) 1074, 1109, 1471, 1506
CviAII CATG 3 cut(s) 371, 728, 967
CviQI GTAC 5 cut(s) 179, 347, 381, 1089, 1220
DdeI CTNAG 6 cut(s) 406, 504, 801, 1017, 1305, 1344
DpnI GATC 4 cut(s) 1014, 1278, 1327, 1387
DpnII GATC 4 cut(s) 1012, 1276, 1325, 1385
DraIII CACNNNGTG 1 cut(s) 688
Eam1104I CTCTTC 2 cut(s) 566, 1286
EarI CTCTTC 2 cut(s) 566, 1286
EciI GGCGGA 2 cut(s) 119, 127
Ecl136II GAGCTC 3 cut(s) 124, 468, 1309
Eco147I AGGCCT 1 cut(s) 799
Eco24I GRGCYC 3 cut(s) 126, 470, 1311
Eco47I GGWCC 2 cut(s) 763, 1100
Eco53kI GAGCTC 3 cut(s) 124, 468, 1309
Eco57I CTGAAG 1 cut(s) 1267
Eco81I CCTNAGG 1 cut(s) 1017
EcoICRI GAGCTC 3 cut(s) 124, 468, 1309
EcoRII CCWGG 1 cut(s) 461
EcoT22I ATGCAT 1 cut(s) 811
EcoT38I GRGCYC 3 cut(s) 126, 470, 1311
Esp3I CGTCTC 2 cut(s) 162, 220
FaeI CATG 3 cut(s) 374, 731, 970
FaiI YATR 8 cut(s) 29, 266, 286, 372, 580, 729, 789, 968
FalI AAGNNNNNCTT 2 cut(s) 424, 456
FaqI GGGAC 1 cut(s) 1086
FatI CATG 3 cut(s) 370, 727, 966
FauI CCCGC 2 cut(s) 159, 1200
Fnu4HI GCNGC 4 cut(s) 66, 551, 609, 665
FokI GGATG 7 cut(s) 179, 308, 713, 979, 1109, 1124, 1519
FriOI GRGCYC 3 cut(s) 126, 470, 1311
Fsp4HI GCNGC 4 cut(s) 66, 551, 609, 665
FspBI CTAG 7 cut(s) 182, 626, 780, 818, 1038, 1077, 1170
GluI GCNGC 4 cut(s) 66, 551, 609, 665
GsuI CTGGAG 1 cut(s) 1295
HaeIII GGCC 2 cut(s) 799, 965
HapII CCGG 4 cut(s) 101, 199, 411, 761
HgaI GACGC 2 cut(s) 71, 1513
Hin1I GRCGYC 2 cut(s) 63, 1524
Hin1II CATG 3 cut(s) 374, 731, 970
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 3 cut(s) 134, 1073, 1370
HpaII CCGG 4 cut(s) 101, 199, 411, 761
HphI GGTGA 4 cut(s) 76, 425, 935, 1481
Hpy166II GTNNAC 4 cut(s) 43, 211, 682, 1479
Hpy188I TCNGA 4 cut(s) 516, 546, 1242, 1306
Hpy188III TCNNGA 8 cut(s) 35, 228, 537, 935, 949, 1016, 1077, 1195
Hpy8I GTNNAC 4 cut(s) 43, 211, 682, 1479
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 897, 1360, 1443
HpyCH4III ACNGT 5 cut(s) 490, 1051, 1093, 1219, 1332
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 9 cut(s) 290, 553, 725, 809, 970, 1055, 1129, 1448, 1479
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 505, 782, 1454
HpyF3I CTNAG 6 cut(s) 406, 504, 801, 1017, 1305, 1344
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 2 cut(s) 63, 1524
Hsp92II CATG 3 cut(s) 374, 731, 970
Kzo9I GATC 4 cut(s) 1012, 1276, 1325, 1385
LguI GCTCTTC 1 cut(s) 566
LmnI GCTCC 5 cut(s) 185, 465, 889, 909, 1314
Lsp1109I GCAGC 3 cut(s) 537, 595, 676
LweI GCATC 3 cut(s) 537, 785, 818
MaeI CTAG 7 cut(s) 182, 626, 780, 818, 1038, 1077, 1170
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 4 cut(s) 166, 649, 826, 1469
MalI GATC 4 cut(s) 1014, 1278, 1327, 1387
MbiI CCGCTC 2 cut(s) 68, 188
MboI GATC 4 cut(s) 1012, 1276, 1325, 1385
MboII GAAGA 6 cut(s) 290, 432, 579, 583, 1092, 1273
MflI RGATCY 1 cut(s) 1276
MhlI GDGCHC 6 cut(s) 126, 470, 787, 914, 1311, 1481
MlyI GAGTC 2 cut(s) 143, 1364
MmeI TCCRAC 1 cut(s) 1423
Mph1103I ATGCAT 1 cut(s) 811
MroXI GAANNNNTTC 1 cut(s) 1394
MseI TTAA 3 cut(s) 78, 1152, 1233
MspI CCGG 4 cut(s) 101, 199, 411, 761
MspR9I CCNGG 2 cut(s) 200, 463
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 1 cut(s) 463
MwoI GCNNNNNNNGC 4 cut(s) 116, 505, 782, 1454
NciI CCSGG 1 cut(s) 200
NdeII GATC 4 cut(s) 1012, 1276, 1325, 1385
NlaIII CATG 3 cut(s) 374, 731, 970
NlaIV GGNNCC 4 cut(s) 535, 690, 885, 1102
NmeAIII GCCGAG 2 cut(s) 140, 145
NmuCI GTSAC 3 cut(s) 166, 826, 1469
NsiI ATGCAT 1 cut(s) 811
NspI RCATGY 1 cut(s) 731
PceI AGGCCT 1 cut(s) 799
PciSI GCTCTTC 1 cut(s) 566
PctI GAATGC 1 cut(s) 811
PdmI GAANNNNTTC 1 cut(s) 1394
PfeI GAWTC 1 cut(s) 1073
PflMI CCANNNNNTGG 1 cut(s) 1322
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 4 cut(s) 67, 552, 610, 666
PleI GAGTC 2 cut(s) 142, 1364
PpsI GAGTC 2 cut(s) 142, 1364
Psp124BI GAGCTC 3 cut(s) 126, 470, 1311
Psp6I CCWGG 1 cut(s) 461
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 4 cut(s) 535, 690, 885, 1102
PspPI GGNCC 3 cut(s) 763, 963, 1100
PsrI GAACNNNNNNTAC 2 cut(s) 339, 371
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 1276
RsaI GTAC 5 cut(s) 180, 348, 382, 1090, 1221
RsaNI GTAC 5 cut(s) 179, 347, 381, 1089, 1220
SacI GAGCTC 3 cut(s) 126, 470, 1311
SapI GCTCTTC 1 cut(s) 566
SaqAI TTAA 3 cut(s) 78, 1152, 1233
SatI GCNGC 4 cut(s) 66, 551, 609, 665
Sau3AI GATC 4 cut(s) 1012, 1276, 1325, 1385
Sau96I GGNCC 3 cut(s) 763, 963, 1100
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 2 cut(s) 143, 1364
ScrFI CCNGG 2 cut(s) 200, 463
SduI GDGCHC 6 cut(s) 126, 470, 787, 914, 1311, 1481
SfaNI GCATC 3 cut(s) 537, 785, 818
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 2 cut(s) 763, 1100
SmlI CTYRAG 2 cut(s) 33, 947
SmoI CTYRAG 2 cut(s) 33, 947
SseBI AGGCCT 1 cut(s) 799
SsiI CCGC 8 cut(s) 66, 104, 138, 152, 188, 315, 531, 1207
SspMI CTAG 7 cut(s) 182, 626, 780, 818, 1038, 1077, 1170
SstI GAGCTC 3 cut(s) 126, 470, 1311
StuI AGGCCT 1 cut(s) 799
StyD4I CCNGG 2 cut(s) 198, 461
TaaI ACNGT 5 cut(s) 490, 1051, 1093, 1219, 1332
TaiI ACGT 1 cut(s) 216
TaqI TCGA 6 cut(s) 60, 132, 841, 879, 1388, 1502
TatI WGTACW 2 cut(s) 178, 346
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 1073
Tru1I TTAA 3 cut(s) 78, 1152, 1233
Tru9I TTAA 3 cut(s) 78, 1152, 1233
TscAI CASTG 4 cut(s) 727, 819, 1222, 1489
TseFI GTSAC 3 cut(s) 166, 826, 1469
TseI GCWGC 3 cut(s) 550, 608, 664
Tsp45I GTSAC 3 cut(s) 166, 826, 1469
TspDTI ATGAA 6 cut(s) 338, 494, 717, 879, 978, 1134
TspGWI ACGGA 2 cut(s) 1289, 1517
TspRI CASTG 4 cut(s) 727, 819, 1222, 1489
Van91I CCANNNNNTGG 1 cut(s) 1322
VneI GTGCAC 1 cut(s) 1477
VpaK11BI GGWCC 2 cut(s) 763, 1100
XapI RAATTY 8 cut(s) 673, 845, 873, 929, 938, 1133, 1229, 1390
XbaI TCTAGA 1 cut(s) 1076
XceI RCATGY 1 cut(s) 731
XcmI CCANNNNNNNNNTGG 2 cut(s) 1222, 1319
XmnI GAANNNNTTC 1 cut(s) 1394
XspI CTAG 7 cut(s) 182, 626, 780, 818, 1038, 1077, 1170
ZrmI AGTACT 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.