Rh7BG188300

Protein TPX2-like isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0005322
Physical Location & Seq
Reverse (-)
15160507 .. 15165614
5108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG188300.1

Sequence Viewer

Length: 1593 bp
ATGGAAATGGAGGAAGATATGGAGGTGGAGCAAGTGTTTACGGCGCACGAAGTGGACATTGACTACGAGTTTGACGCGGCCAGGTTCTTTGATTTTAGTCGGCAGGAGACGCCGGTGGAGGCGCGGCGGGCTGAGCTCTGGTTCGAATCCGCCAAGAGCTATCCTCCTTCTCCTGTTGTGACAAGGATGATACTAGGAGGGGACATTCTCCTGGGAAATGTGAATACCTCCCCAAAATCTAAAGATGTGGAGAATACAAATGGCATTGGCTGTAATATCGTCGCGGGCCAAGAATATGTAAATAGCGGAGATTGTGAAGGAATGAATAAAGGGATTTTCGGCAACTTGCAAAGAGTTCTAAATCAATCACATGGAGCAGGTGCAGGGTTGACATTCAATCATTCAAAAGGTCAAAATAAATCTTCAGTAAAGCTCCCCCCCAGGAAATCAACTTTGATGAAACCTACAGCAAGTCAACTTGCTAAGCAAAATCGCCCCCCTCATATTGGTGGTTCCAGATTTCAGACGTTACATGTGCAAAACAGTGAGAAAAGCTTCTGTAGCTCTTCTGGAGTTGAAACTCAAGCTACCAAAAGGCAGAAGTTAGAGGGAGGTCACTTGCATAAGGTTACTACTGAGGCAATGCAGCAAACTAATTTCATCCACAAGGCACCTAAAAAGGTCGAAACTTTTGATAAGACCTCTATGCATGCCAAGTTGAAAATTACTATTCCAATAGAGCCAGACTTTGAAACGACATATAGGGCGCAAAGGATAAGGCCTAAGAATGGATCAGTGTTGGAACAAGTGCCATCAGCTCCTCGAAAATTCAAAGCCCGTCCACTGAACAAAAAAATTTTTGAGGCTCCGTCACTGCCACTCCCAAAGAGGAGCACTCCAAAGTTGCCAGAATTTCATGAATTTCACCTGAAGACAATGGAAAGAGCTATGCAAAATCAATCTACTGTTCCATCATCCTCACATCATTTCAATGGTCAAGAGAAGGTGTTGGACAAACCTAGTGCTTCCACTGTCGCAGGAAATGGAAACGGAGAACCCAGAAGGCCAAGTAAATTGGATGGTCCTAAGCAGGATGGAAGTGATGTAATGCCAAAATTTAAGGCTCGTCCTCTTAATAAAAAGATCTTTTCTAGTAAAGGGGATATCGGTGTTTTCTGGAATAGCAAAAGAGAAACCACCATACCAATGGAATTTAATTTTCAGACAGAGAGGAGAACTCAGCAGATTCCACCAACTGATCTTTTCAGTAAGCTCTCTTTAGCATCTGAACTCCAGCCGAATAATGGCTCTCGGTTGAAATTGCCTCAGCCAACATCTGTATCAGTGAAGGACTCAAAAGAAAATAGAGCGAATAATTTCCAACCAGAACATAAGATAATGGTAAAAGAGAGACCTTCTCTGTTTGGTGGAAAGCAGGCTCTATTTGGGGGTGCCAGGCCCATCAGTGATGTTGATAACAAATCAAGGATGAGGAGTTTGGGAGCGAGTCAGCTAGAGGTAAAAAGATCACAAAGTTCTTGGAATGGATATGCTATCAAAGTGATAGATGGTGAAAATGGATCTCTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

530

Amino Acids

59.12

Weight (kDa)

9.69

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 240 - 407 1.4e-45 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 368
Acc36I ACCTGC 1 cut(s) 368
AccB1I GGYRCC 2 cut(s) 670, 1451
AccII CGCG 3 cut(s) 77, 124, 284
AciI CCGC 6 cut(s) 77, 124, 127, 150, 284, 306
AclWI GGATC 2 cut(s) 799, 1588
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 6 cut(s) 827, 855, 911, 920, 1115, 1211
AcuI CTGAAG 2 cut(s) 408, 950
AcyI GRCGYC 1 cut(s) 110
AdeI CACNNNGTG 1 cut(s) 52
AfiI CCNNNNNNNGG 3 cut(s) 506, 788, 1304
AflIII ACRYGT 1 cut(s) 532
AgsI TTSAA 8 cut(s) 397, 405, 578, 721, 752, 832, 991, 1318
AjnI CCWGG 4 cut(s) 80, 210, 440, 1454
Alw21I GWGCWC 2 cut(s) 138, 896
Alw26I GTCTC 2 cut(s) 101, 1405
AlwI GGATC 2 cut(s) 799, 1588
AoxI GGCC 5 cut(s) 78, 286, 779, 1064, 1457
ApeKI GCWGC 1 cut(s) 646
ApoI RAATTY 6 cut(s) 827, 855, 911, 920, 1115, 1211
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
Asp700I GAANNNNTTC 2 cut(s) 554, 1376
AspLEI GCGC 3 cut(s) 46, 124, 769
AspS9I GGNCC 3 cut(s) 286, 1082, 1458
AsuHPI GGTGA 2 cut(s) 917, 1583
AsuII TTCGAA 1 cut(s) 144
AvaII GGWCC 1 cut(s) 1082
BaeI ACNNNNGTAYC 2 cut(s) 1323, 1356
BanI GGYRCC 2 cut(s) 670, 1451
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 938
Bbv12I GWGCWC 2 cut(s) 138, 896
BbvCI CCTCAGC 1 cut(s) 1326
BbvI GCAGC 1 cut(s) 658
BccI CCATC 6 cut(s) 820, 979, 1073, 1088, 1469, 1562
BceAI ACGGC 1 cut(s) 57
BciT130I CCWGG 4 cut(s) 82, 212, 442, 1456
BcoDI GTCTC 2 cut(s) 101, 1405
BfaI CTAG 4 cut(s) 194, 1020, 1152, 1514
BfmI CTRYAG 2 cut(s) 465, 559
BfuAI ACCTGC 1 cut(s) 368
BglII AGATCT 1 cut(s) 1143
BisI GCNGC 3 cut(s) 78, 125, 647
BlpI GCTNAGC 2 cut(s) 132, 483
BlsI GCNGC 3 cut(s) 79, 126, 648
Bme1390I CCNGG 4 cut(s) 82, 212, 442, 1456
Bme18I GGWCC 1 cut(s) 1082
BmgT120I GGNCC 3 cut(s) 286, 1082, 1458
BmiI GGNNCC 4 cut(s) 514, 672, 867, 1453
BmrFI CCNGG 4 cut(s) 82, 212, 442, 1456
BmsI GCATC 1 cut(s) 1292
BpiI GAAGAC 1 cut(s) 938
BplI GAGNNNNNCTC 8 cut(s) 148, 180, 880, 912, 1222, 1254, 1402, 1434
BpmI CTGGAG 2 cut(s) 591, 1277
Bpu10I CCTNAGC 2 cut(s) 1086, 1326
Bpu1102I GCTNAGC 2 cut(s) 132, 483
Bpu14I TTCGAA 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 1405
BsaJI CCNNGG 2 cut(s) 211, 440
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 864, 894
Bsc4I CCNNNNNNNGG 3 cut(s) 506, 788, 1304
Bse118I RCCGGY 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 648
BseBI CCWGG 4 cut(s) 82, 212, 442, 1456
BseDI CCNNGG 2 cut(s) 211, 440
BseGI GGATG 6 cut(s) 192, 660, 974, 1084, 1099, 1494
BseLI CCNNNNNNNGG 3 cut(s) 506, 788, 1304
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 4 cut(s) 123, 627, 1253, 1340
BseRI GAGGAG 4 cut(s) 810, 904, 1246, 1507
BseXI GCAGC 1 cut(s) 658
BsgI GTGCAG 1 cut(s) 402
Bsh1236I CGCG 3 cut(s) 77, 124, 284
BshFI GGCC 5 cut(s) 80, 288, 781, 1066, 1459
BshNI GGYRCC 2 cut(s) 670, 1451
BsiHKAI GWGCWC 2 cut(s) 138, 896
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 3 cut(s) 506, 788, 1304
BsmAI GTCTC 2 cut(s) 101, 1405
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 5 cut(s) 80, 288, 781, 1066, 1459
Bso31I GGTCTC 1 cut(s) 1405
Bsp119I TTCGAA 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 138, 896
Bsp143I GATC 5 cut(s) 791, 1143, 1258, 1526, 1580
Bsp1720I GCTNAGC 2 cut(s) 132, 483
BspACI CCGC 6 cut(s) 77, 124, 127, 150, 284, 306
BspANI GGCC 5 cut(s) 80, 288, 781, 1066, 1459
BspCNI CTCAG 4 cut(s) 124, 628, 1252, 1339
BspFNI CGCG 3 cut(s) 77, 124, 284
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 4 cut(s) 514, 672, 867, 1453
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 2 cut(s) 799, 1588
BspQI GCTCTTC 1 cut(s) 571
BspT104I TTCGAA 1 cut(s) 144
BspT107I GGYRCC 2 cut(s) 670, 1451
BspTNI GGTCTC 1 cut(s) 1405
BsrDI GCAATG 1 cut(s) 648
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 211, 440
BssMI GATC 5 cut(s) 791, 1143, 1258, 1526, 1580
BssNI GRCGYC 1 cut(s) 110
Bst2UI CCWGG 4 cut(s) 82, 212, 442, 1456
Bst4CI ACNGT 3 cut(s) 545, 967, 1033
Bst6I CTCTTC 1 cut(s) 571
BstACI GRCGYC 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 4 cut(s) 129, 286, 711, 1437
BstDEI CTNAG 7 cut(s) 132, 483, 636, 783, 1086, 1239, 1326
BstF5I GGATG 6 cut(s) 192, 660, 974, 1084, 1099, 1494
BstFNI CGCG 3 cut(s) 77, 124, 284
BstHHI GCGC 3 cut(s) 46, 124, 769
BstKTI GATC 5 cut(s) 794, 1146, 1261, 1529, 1583
BstMAI GTCTC 2 cut(s) 101, 1405
BstMBI GATC 5 cut(s) 791, 1143, 1258, 1526, 1580
BstMWI GCNNNNNNNGC 4 cut(s) 109, 128, 133, 561
BstNI CCWGG 4 cut(s) 82, 212, 442, 1456
BstNSI RCATGY 2 cut(s) 536, 713
BstSCI CCNGG 4 cut(s) 80, 210, 440, 1454
BstSFI CTRYAG 2 cut(s) 465, 559
BstUI CGCG 3 cut(s) 77, 124, 284
BstV1I GCAGC 1 cut(s) 658
BstV2I GAAGAC 1 cut(s) 938
BstX2I RGATCY 2 cut(s) 1143, 1580
BstXI CCANNNNNNTGG 1 cut(s) 1207
BstYI RGATCY 2 cut(s) 1143, 1580
BsuRI GGCC 5 cut(s) 80, 288, 781, 1066, 1459
BtsCI GGATG 6 cut(s) 192, 660, 974, 1084, 1099, 1494
BtsI GCAGTG 1 cut(s) 872
BtsIMutI CAGTG 7 cut(s) 550, 801, 842, 872, 1029, 1350, 1471
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 4 cut(s) 129, 286, 711, 1437
CciI TCATGA 1 cut(s) 916
CfoI GCGC 3 cut(s) 46, 124, 769
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 3 cut(s) 286, 1082, 1458
CseI GACGC 2 cut(s) 83, 118
CviAII CATG 4 cut(s) 371, 533, 710, 917
DdeI CTNAG 7 cut(s) 132, 483, 636, 783, 1086, 1239, 1326
DpnI GATC 5 cut(s) 793, 1145, 1260, 1528, 1582
DpnII GATC 5 cut(s) 791, 1143, 1258, 1526, 1580
DraIII CACNNNGTG 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 78
Eam1104I CTCTTC 1 cut(s) 571
EarI CTCTTC 1 cut(s) 571
EciI GGCGGA 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 781
Eco24I GRGCYC 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 1405
Eco32I GATATC 1 cut(s) 1165
Eco47I GGWCC 1 cut(s) 1082
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 2 cut(s) 408, 950
EcoICRI GAGCTC 1 cut(s) 136
EcoRII CCWGG 4 cut(s) 80, 210, 440, 1454
EcoRV GATATC 1 cut(s) 1165
EcoT22I ATGCAT 1 cut(s) 711
EcoT38I GRGCYC 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 4 cut(s) 374, 536, 713, 920
FaqI GGGAC 1 cut(s) 215
FatI CATG 4 cut(s) 370, 532, 709, 916
FauI CCCGC 2 cut(s) 120, 277
Fnu4HI GCNGC 3 cut(s) 78, 125, 647
FokI GGATG 6 cut(s) 199, 647, 961, 1091, 1106, 1501
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 3 cut(s) 78, 125, 647
FspBI CTAG 4 cut(s) 194, 1020, 1152, 1514
GlaI GCGC 3 cut(s) 45, 123, 768
GluI GCNGC 3 cut(s) 78, 125, 647
GsuI CTGGAG 2 cut(s) 591, 1277
HaeIII GGCC 5 cut(s) 80, 288, 781, 1066, 1459
HapII CCGG 1 cut(s) 113
HgaI GACGC 2 cut(s) 83, 118
HhaI GCGC 3 cut(s) 46, 124, 769
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 4 cut(s) 374, 536, 713, 920
Hin6I GCGC 3 cut(s) 44, 122, 767
HinP1I GCGC 3 cut(s) 44, 122, 767
HincII GTYRAC 2 cut(s) 390, 476
HindII GTYRAC 2 cut(s) 390, 476
HindIII AAGCTT 1 cut(s) 553
HinfI GANTC 4 cut(s) 146, 1246, 1352, 1507
HpaII CCGG 1 cut(s) 113
HphI GGTGA 2 cut(s) 917, 1583
Hpy166II GTNNAC 5 cut(s) 39, 55, 390, 476, 842
Hpy188I TCNGA 3 cut(s) 525, 1224, 1288
Hpy188III TCNNGA 5 cut(s) 516, 570, 917, 998, 1177
Hpy8I GTNNAC 5 cut(s) 39, 55, 390, 476, 842
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 6 cut(s) 177, 311, 997, 1056, 1342, 1425
HpyCH4III ACNGT 3 cut(s) 545, 967, 1033
HpyCH4IV ACGT 1 cut(s) 527
HpyCH4V TGCA 7 cut(s) 349, 383, 538, 622, 646, 709, 952
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 128, 133, 561
HpyF3I CTNAG 7 cut(s) 132, 483, 636, 783, 1086, 1239, 1326
HpySE526I ACGT 1 cut(s) 527
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 4 cut(s) 374, 536, 713, 920
HspAI GCGC 3 cut(s) 44, 122, 767
Kzo9I GATC 5 cut(s) 791, 1143, 1258, 1526, 1580
LguI GCTCTTC 1 cut(s) 571
LmnI GCTCC 7 cut(s) 28, 374, 438, 823, 871, 891, 1502
Lsp1109I GCAGC 1 cut(s) 658
LweI GCATC 1 cut(s) 1292
MaeI CTAG 4 cut(s) 194, 1020, 1152, 1514
MaeII ACGT 1 cut(s) 527
MaeIII GTNAC 5 cut(s) 178, 528, 614, 628, 870
MalI GATC 5 cut(s) 793, 1145, 1260, 1528, 1582
MboI GATC 5 cut(s) 791, 1143, 1258, 1526, 1580
MboII GAAGA 4 cut(s) 26, 414, 558, 943
MflI RGATCY 2 cut(s) 1143, 1580
MhlI GDGCHC 2 cut(s) 138, 896
MlyI GAGTC 2 cut(s) 1346, 1516
MmeI TCCRAC 3 cut(s) 780, 990, 1405
Mph1103I ATGCAT 1 cut(s) 711
MroXI GAANNNNTTC 2 cut(s) 554, 1376
MseI TTAA 3 cut(s) 1119, 1134, 1215
MslI CAYNNNNRTG 3 cut(s) 507, 990, 1205
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 4 cut(s) 82, 212, 442, 1456
MvaI CCWGG 4 cut(s) 82, 212, 442, 1456
MvnI CGCG 3 cut(s) 77, 124, 284
MwoI GCNNNNNNNGC 4 cut(s) 109, 128, 133, 561
NdeII GATC 5 cut(s) 791, 1143, 1258, 1526, 1580
NlaIII CATG 4 cut(s) 374, 536, 713, 920
NlaIV GGNNCC 4 cut(s) 514, 672, 867, 1453
NmuCI GTSAC 3 cut(s) 178, 614, 870
NsiI ATGCAT 1 cut(s) 711
NspI RCATGY 2 cut(s) 536, 713
NspV TTCGAA 1 cut(s) 144
PaeI GCATGC 1 cut(s) 713
PagI TCATGA 1 cut(s) 916
PaqCI CACCTGC 1 cut(s) 368
PceI AGGCCT 1 cut(s) 781
PciI ACATGT 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 571
PdmI GAANNNNTTC 2 cut(s) 554, 1376
PfeI GAWTC 2 cut(s) 146, 1246
PkrI GCNGC 3 cut(s) 79, 126, 648
PleI GAGTC 2 cut(s) 1346, 1515
PpsI GAGTC 2 cut(s) 1346, 1515
PscI ACATGT 1 cut(s) 532
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 4 cut(s) 80, 210, 440, 1454
PspGI CCWGG 4 cut(s) 80, 210, 440, 1454
PspN4I GGNNCC 4 cut(s) 514, 672, 867, 1453
PspPI GGNCC 3 cut(s) 286, 1082, 1458
PsuI RGATCY 2 cut(s) 1143, 1580
RseI CAYNNNNRTG 3 cut(s) 507, 990, 1205
SacI GAGCTC 1 cut(s) 138
SapI GCTCTTC 1 cut(s) 571
SaqAI TTAA 3 cut(s) 1119, 1134, 1215
SatI GCNGC 3 cut(s) 78, 125, 647
Sau3AI GATC 5 cut(s) 791, 1143, 1258, 1526, 1580
Sau96I GGNCC 3 cut(s) 286, 1082, 1458
SchI GAGTC 2 cut(s) 1346, 1516
ScrFI CCNGG 4 cut(s) 82, 212, 442, 1456
SduI GDGCHC 2 cut(s) 138, 896
SfaNI GCATC 1 cut(s) 1292
SfcI CTRYAG 2 cut(s) 465, 559
SfuI TTCGAA 1 cut(s) 144
SgrAI CRCCGGYG 1 cut(s) 112
SinI GGWCC 1 cut(s) 1082
SmiMI CAYNNNNRTG 3 cut(s) 507, 990, 1205
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
SphI GCATGC 1 cut(s) 713
SseBI AGGCCT 1 cut(s) 781
SsiI CCGC 6 cut(s) 77, 124, 127, 150, 284, 306
SspMI CTAG 4 cut(s) 194, 1020, 1152, 1514
SstI GAGCTC 1 cut(s) 138
StuI AGGCCT 1 cut(s) 781
StyD4I CCNGG 4 cut(s) 80, 210, 440, 1454
TaaI ACNGT 3 cut(s) 545, 967, 1033
TaiI ACGT 1 cut(s) 530
TaqI TCGA 3 cut(s) 144, 684, 823
TauI GCSGC 2 cut(s) 80, 127
TfiI GAWTC 2 cut(s) 146, 1246
Tru1I TTAA 3 cut(s) 1119, 1134, 1215
Tru9I TTAA 3 cut(s) 1119, 1134, 1215
TscAI CASTG 7 cut(s) 550, 801, 849, 879, 1036, 1350, 1471
TseFI GTSAC 3 cut(s) 178, 614, 870
TseI GCWGC 1 cut(s) 646
Tsp45I GTSAC 3 cut(s) 178, 614, 870
TspDTI ATGAA 5 cut(s) 338, 473, 649, 905, 933
TspGWI ACGGA 2 cut(s) 858, 1065
TspRI CASTG 7 cut(s) 550, 801, 849, 879, 1036, 1350, 1471
VpaK11BI GGWCC 1 cut(s) 1082
XapI RAATTY 6 cut(s) 827, 855, 911, 920, 1115, 1211
XceI RCATGY 2 cut(s) 536, 713
XcmI CCANNNNNNNNNTGG 2 cut(s) 1204, 1301
XmnI GAANNNNTTC 2 cut(s) 554, 1376
XspI CTAG 4 cut(s) 194, 1020, 1152, 1514
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.