AT4G12850

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011730
Physical Location & Seq
Forward (+)
7536913 .. 7539048
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G12850.4

Sequence Viewer

Length: 555 bp
ATGATGACCGGAGATCTGAAACTTGATGAACCTTACGTAGGTTTGAAATTCGAATCAGAAGAAGAAGCTAAAGATTTCTATGTAGAATACTCCAAAAGATTAGGGTTTGTTGTGCGTATGATGCAGAGACGAAGATCAGGTATTGATGGAAGAACACTAGCGAGAAGATTAGGTTGTAACAAGCAAGGCTTTGGTCCTAATAATCAACGATCATCTAGTTCTAGTTCTAGTTCACGAGAAGGTTGCAAAGCTACGATTTTGGTGAAAATGGAGAAATCTGGGAAATGGGTTGTTACTAGATTCATCAAAGAACACAATCACTCTCTTCAATTCATTGGGTCTTCTTCTTATGATTCTTTTGCTGATAAGGAAAGGAAGATTAAAGAGCTTACGGAGGAGATCGAGTGTCAGGACCGATTATGCGATGTGTATCGGGATCGATTGGTGAGTTTTATCGATAATGTTGAACATTATACGGAAGAATTGTCACTTAAAGTTCGAGATATTGTGGAGAATGTTAAGAAACTTGAATGTCAAATACAAACAAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

184

Amino Acids

21.38

Weight (kDa)

8.54

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 25 - 110 6e-29 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 444
AcsI RAATTY 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 4 cut(s) 46, 329, 467, 530
AluBI AGCT 4 cut(s) 68, 251, 388, 551
AluI AGCT 4 cut(s) 68, 251, 388, 551
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 444
ApoI RAATTY 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 194, 412
AsuHPI GGTGA 2 cut(s) 274, 457
AsuII TTCGAA 1 cut(s) 51
AvaII GGWCC 2 cut(s) 194, 412
BauI CACGAG 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 333
BccI CCATC 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 5 cut(s) 158, 216, 222, 228, 297
BglII AGATCT 1 cut(s) 13
Bme18I GGWCC 2 cut(s) 194, 412
BmgT120I GGNCC 2 cut(s) 194, 412
BmsI GCATC 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 51
Bsa29I ATCGAT 2 cut(s) 439, 456
BsaAI YACGTR 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 429
BsaWI WCCGGW 1 cut(s) 8
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse8I GATNNNNATC 1 cut(s) 429
BseCI ATCGAT 2 cut(s) 439, 456
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 410
BshVI ATCGAT 2 cut(s) 439, 456
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
Bsp119I TTCGAA 1 cut(s) 51
Bsp143I GATC 5 cut(s) 13, 134, 209, 399, 436
BspDI ATCGAT 2 cut(s) 439, 456
BspPI GGATC 1 cut(s) 444
BspT104I TTCGAA 1 cut(s) 51
BssMI GATC 5 cut(s) 13, 134, 209, 399, 436
BssSI CACGAG 1 cut(s) 234
Bst2BI CACGAG 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 330
BstBAI YACGTR 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 51
BstENI CCTNNNNNAGG 1 cut(s) 36
BstKTI GATC 5 cut(s) 16, 137, 212, 402, 439
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 5 cut(s) 13, 134, 209, 399, 436
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstSNI TACGTA 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
Bsu15I ATCGAT 2 cut(s) 439, 456
BsuTUI ATCGAT 2 cut(s) 439, 456
BtgZI GCGATG 1 cut(s) 438
Cfr13I GGNCC 2 cut(s) 194, 412
ClaI ATCGAT 2 cut(s) 439, 456
CviJI RGCY 5 cut(s) 68, 189, 251, 388, 551
CviKI_1 RGCY 5 cut(s) 68, 189, 251, 388, 551
DpnI GATC 5 cut(s) 15, 136, 211, 401, 438
DpnII GATC 5 cut(s) 13, 134, 209, 399, 436
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco105I TACGTA 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 194, 412
EcoNI CCTNNNNNAGG 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 121
FaiI YATR 5 cut(s) 81, 119, 351, 421, 474
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FspBI CTAG 5 cut(s) 158, 216, 222, 228, 297
HapII CCGG 1 cut(s) 9
HinfI GANTC 3 cut(s) 53, 300, 353
HpaII CCGG 1 cut(s) 9
HphI GGTGA 2 cut(s) 274, 457
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 18, 58
Hpy188III TCNNGA 4 cut(s) 234, 410, 434, 500
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 124, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpySE526I ACGT 1 cut(s) 36
Kzo9I GATC 5 cut(s) 13, 134, 209, 399, 436
LpnPI CCDG 4 cut(s) 22, 123, 264, 395
LweI GCATC 1 cut(s) 111
MaeI CTAG 5 cut(s) 158, 216, 222, 228, 297
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 3 cut(s) 176, 292, 486
MalI GATC 5 cut(s) 15, 136, 211, 401, 438
MboI GATC 5 cut(s) 13, 134, 209, 399, 436
MflI RGATCY 1 cut(s) 13
MluCI AATT 3 cut(s) 47, 329, 482
MnlI CCTC 1 cut(s) 388
MseI TTAA 3 cut(s) 381, 492, 519
MspI CCGG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 5 cut(s) 13, 134, 209, 399, 436
NmuCI GTSAC 1 cut(s) 486
NspV TTCGAA 1 cut(s) 51
PfeI GAWTC 3 cut(s) 53, 300, 353
Ppu21I YACGTR 1 cut(s) 37
PspPI GGNCC 2 cut(s) 194, 412
PsuI RGATCY 1 cut(s) 13
SaqAI TTAA 3 cut(s) 381, 492, 519
Sau3AI GATC 5 cut(s) 13, 134, 209, 399, 436
Sau96I GGNCC 2 cut(s) 194, 412
SfaNI GCATC 1 cut(s) 111
SfuI TTCGAA 1 cut(s) 51
SinI GGWCC 2 cut(s) 194, 412
SnaBI TACGTA 1 cut(s) 37
Sse9I AATT 3 cut(s) 47, 329, 482
SspMI CTAG 5 cut(s) 158, 216, 222, 228, 297
TaiI ACGT 1 cut(s) 39
TaqI TCGA 5 cut(s) 51, 402, 439, 456, 499
TaqII GACCGA 1 cut(s) 429
TasI AATT 3 cut(s) 47, 329, 482
TfiI GAWTC 3 cut(s) 53, 300, 353
Tru1I TTAA 3 cut(s) 381, 492, 519
Tru9I TTAA 3 cut(s) 381, 492, 519
TseFI GTSAC 1 cut(s) 486
Tsp45I GTSAC 1 cut(s) 486
TspDTI ATGAA 3 cut(s) 42, 292, 322
TspGWI ACGGA 2 cut(s) 407, 491
VpaK11BI GGWCC 2 cut(s) 194, 412
XagI CCTNNNNNAGG 1 cut(s) 36
XapI RAATTY 1 cut(s) 47
XspI CTAG 5 cut(s) 158, 216, 222, 228, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.