Rw6G022560

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011730
Physical Location & Seq
Forward (+)
44529002 .. 44530978
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022560.1

Sequence Viewer

Length: 708 bp
ATGCTACTAACTCTTCAGCAGTGCTTGAAAAAGTTGTTGAATTTAACTGAGAAGCAACACATGCAGAACATTTTTGTGGATTTGGATGAGGAGGAGGAGGAAGTTGGGGCAGTTGATGGGTCTGTTGAAGTAAACATGGGCGATTCAGAAGGAGGTTCCGTTATAGAACCTTATGTTGGTATGGAATTTCAGTCCGAAGAAGATGCCAAGAAATTCTATACTGAGTATGCCAGGCGAGTCGGTTTTTTTGTCCGTGTTATGCAGCGTCGTCGAGGTATTGATGGGAGAACCCTTGCCCGTCGGCTTGGATGTAACAAACAAGGTTTTTCTCCCAACCATAAGGGAAATCTTGGACGTGAAAAAAAGCCCAGAGTTAGTGCACGAGAAGGTTGCAATGCCACAATCTTGGTGAAGGTGGATAAATCTGGAAAATGGGTGGTTACACGATTTGTAAAGGATCATAATCATCCTCTCATTGTTACTGCCAATGAGTTTAGCACAGCGGGCGACAAGGATAAGAAAATAGAGGAACTTATGATGGAATTGGATCATCAGGATAAACTATGTGCAGCTTATCGAGAAAAACTACTCAGTTTCATAAATAACGTTGAGGCAGAAACAGAAGAACTTTCCGCAAAGATAAAAGTGATTGTTGACAATGTGAGAAAAGTTGAATCTGAAACGCAAAAACATTCTCACCGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

235

Amino Acids

26.85

Weight (kDa)

7.06

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 71 - 159 6.3e-27 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 503, 633
AclI AACGTT 1 cut(s) 606
AclWI GGATC 2 cut(s) 465, 555
AcsI RAATTY 3 cut(s) 40, 185, 212
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 4 cut(s) 28, 40, 128, 674
AjiI CACGTC 1 cut(s) 356
AjnI CCWGG 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
AluBI AGCT 1 cut(s) 572
AluI AGCT 1 cut(s) 572
Alw21I GWGCWC 1 cut(s) 382
Alw44I GTGCAC 1 cut(s) 378
AlwI GGATC 2 cut(s) 465, 555
ApaLI GTGCAC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 262, 569
ApoI RAATTY 3 cut(s) 40, 185, 212
AsuHPI GGTGA 2 cut(s) 421, 689
BaeGI GKGCMC 1 cut(s) 382
BauI CACGAG 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 2 cut(s) 274, 581
BccI CCATC 3 cut(s) 110, 275, 532
BcgI CGANNNNNNTGC 6 cut(s) 185, 219, 251, 285, 372, 406
BciT130I CCWGG 1 cut(s) 232
BisI GCNGC 2 cut(s) 263, 570
BlsI GCNGC 2 cut(s) 264, 571
Bme1390I CCNGG 1 cut(s) 232
BmgBI CACGTC 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 462
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 400
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 1 cut(s) 232
BseGI GGATG 3 cut(s) 91, 314, 466
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 3 cut(s) 39, 213, 604
BseRI GAGGAG 3 cut(s) 104, 107, 110
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 2 cut(s) 274, 581
BsgI GTGCAG 1 cut(s) 588
BsiHKAI GWGCWC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 2 cut(s) 457, 547
BspACI CCGC 2 cut(s) 503, 633
BspCNI CTCAG 3 cut(s) 40, 214, 603
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 2 cut(s) 465, 555
BsrDI GCAATG 1 cut(s) 400
BssMI GATC 2 cut(s) 457, 547
BssSI CACGAG 1 cut(s) 381
Bst2BI CACGAG 1 cut(s) 381
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 701
Bst6I CTCTTC 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 3 cut(s) 48, 222, 590
BstF5I GGATG 3 cut(s) 91, 314, 466
BstKTI GATC 2 cut(s) 460, 550
BstMBI GATC 2 cut(s) 457, 547
BstMWI GCNNNNNNNGC 2 cut(s) 61, 504
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 230
BstSLI GKGCMC 1 cut(s) 382
BstV1I GCAGC 2 cut(s) 274, 581
BstXI CCANNNNNNTGG 1 cut(s) 406
BtrI CACGTC 1 cut(s) 356
BtsCI GGATG 3 cut(s) 91, 314, 466
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 505
CseI GACGC 1 cut(s) 254
CviAII CATG 2 cut(s) 61, 136
CviJI RGCY 3 cut(s) 304, 367, 572
CviKI_1 RGCY 3 cut(s) 304, 367, 572
DdeI CTNAG 3 cut(s) 48, 222, 590
DpnI GATC 2 cut(s) 459, 549
DpnII GATC 2 cut(s) 457, 547
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 230
FaeI CATG 2 cut(s) 64, 139
FatI CATG 2 cut(s) 60, 135
FauI CCCGC 1 cut(s) 496
Fnu4HI GCNGC 2 cut(s) 263, 570
FokI GGATG 3 cut(s) 98, 321, 453
Fsp4HI GCNGC 2 cut(s) 263, 570
GluI GCNGC 2 cut(s) 263, 570
HgaI GACGC 1 cut(s) 254
Hin1II CATG 2 cut(s) 64, 139
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 3 cut(s) 143, 237, 674
HphI GGTGA 2 cut(s) 421, 689
Hpy166II GTNNAC 3 cut(s) 133, 380, 655
Hpy188I TCNGA 3 cut(s) 148, 196, 679
Hpy188III TCNNGA 3 cut(s) 426, 554, 578
Hpy8I GTNNAC 3 cut(s) 133, 380, 655
Hpy99I CGWCG 3 cut(s) 270, 273, 303
HpyAV CCTTC 3 cut(s) 143, 380, 406
HpyCH4III ACNGT 1 cut(s) 701
HpyCH4IV ACGT 2 cut(s) 355, 606
HpyCH4V TGCA 5 cut(s) 64, 262, 380, 393, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 504
HpyF3I CTNAG 3 cut(s) 48, 222, 590
HpySE526I ACGT 2 cut(s) 355, 606
Hsp92II CATG 2 cut(s) 64, 139
Kzo9I GATC 2 cut(s) 457, 547
LpnPI CCDG 5 cut(s) 217, 244, 382, 411, 539
Lsp1109I GCAGC 2 cut(s) 274, 581
LweI GCATC 1 cut(s) 193
MaeII ACGT 2 cut(s) 355, 606
MaeIII GTNAC 3 cut(s) 311, 439, 478
MalI GATC 2 cut(s) 459, 549
MboI GATC 2 cut(s) 457, 547
MboII GAAGA 4 cut(s) 5, 209, 212, 635
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 4 cut(s) 40, 185, 212, 542
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 9 cut(s) 82, 85, 88, 91, 146, 266, 480, 520, 604
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 503
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 61, 504
NdeII GATC 2 cut(s) 457, 547
NlaIII CATG 2 cut(s) 64, 139
NlaIV GGNNCC 1 cut(s) 157
NspI RCATGY 1 cut(s) 64
PfeI GAWTC 2 cut(s) 143, 674
PkrI GCNGC 2 cut(s) 264, 571
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp1406I AACGTT 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 2 cut(s) 263, 570
Sau3AI GATC 2 cut(s) 457, 547
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 1 cut(s) 382
SetI ASST 9 cut(s) 157, 172, 277, 325, 358, 391, 417, 574, 609
SfaNI GCATC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 4 cut(s) 40, 185, 212, 542
SsiI CCGC 2 cut(s) 503, 633
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 701
TaiI ACGT 2 cut(s) 358, 609
TaqI TCGA 2 cut(s) 271, 577
TasI AATT 4 cut(s) 40, 185, 212, 542
TfiI GAWTC 2 cut(s) 143, 674
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 1 cut(s) 26
TseI GCWGC 2 cut(s) 262, 569
TspDTI ATGAA 1 cut(s) 586
TspGWI ACGGA 2 cut(s) 148, 242
TspRI CASTG 1 cut(s) 26
VneI GTGCAC 1 cut(s) 378
XapI RAATTY 3 cut(s) 40, 185, 212
XceI RCATGY 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.