RchiOBHm_Chr6g0282571

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011730
Physical Location & Seq
Forward (+)
45833817 .. 45836203
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25335

Sequence Viewer

Length: 573 bp
ATGGGCGATTCAGAAGGAGGTTCCGTTATAGAACCTTATGTTGGTATGGAATTTGAGTCCGAAGAAGATGCCAAGAAATTCTATACTGAGTATGCCAGGCGAGTCGGTTTTTTTGTCCGTGTTATGCAGCGTCGTCGAGGTATTGATGGGAGAACTCTTGCCCGTCGGCTTGGATGTAACAAACAAGGTTTTTCTCCCAACCATAAGGGAAATCTTGGACGTGAAAAAAAGCCCAGAGTTAGTGCACGAGAAGGTTGCAATGCCACAATCTTGGTGAAGGTGGATAAATCTGGAAAATGGGTGGTTACAAGATTTGTAAAGGATCATAATCATCCTCTCATTGTTACTGCCAATGAGTTTAGCACAGCGGGCGACAAGGATAAGAAAATAGAGGAACTTATGATGGAATTGGATCATCAGGATCAACTATGTGCAGCTTATCGAGAAAAACTACTCAGTTTCATAAATAACGTTGAGGCAGAAACAGAAGAACTTTCCGCAAAGATAAAAGCGATTGTTGACAATGTGAGAAAAGTTGAATCTGAAACGCAAAAACATTCTCACCGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

190

Amino Acids

21.7

Weight (kDa)

9.06

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 26 - 114 3.8e-27 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 368, 498
AclI AACGTT 1 cut(s) 471
AclWI GGATC 3 cut(s) 330, 420, 429
AcsI RAATTY 2 cut(s) 50, 77
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 1 cut(s) 539
AjiI CACGTC 1 cut(s) 221
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw21I GWGCWC 1 cut(s) 247
Alw44I GTGCAC 1 cut(s) 243
AlwI GGATC 3 cut(s) 330, 420, 429
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 127, 434
ApoI RAATTY 2 cut(s) 50, 77
AsuHPI GGTGA 2 cut(s) 286, 554
BaeGI GKGCMC 1 cut(s) 247
BauI CACGAG 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 2 cut(s) 139, 446
BccI CCATC 2 cut(s) 140, 397
BcgI CGANNNNNNTGC 6 cut(s) 50, 84, 116, 150, 237, 271
BciT130I CCWGG 1 cut(s) 97
BisI GCNGC 2 cut(s) 128, 435
BlsI GCNGC 2 cut(s) 129, 436
Bme1390I CCNGG 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 265
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 1 cut(s) 97
BseGI GGATG 2 cut(s) 179, 331
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 78, 469
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 2 cut(s) 139, 446
BsgI GTGCAG 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 3 cut(s) 322, 412, 421
BspACI CCGC 2 cut(s) 368, 498
BspCNI CTCAG 2 cut(s) 79, 468
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 3 cut(s) 330, 420, 429
BsrDI GCAATG 1 cut(s) 265
BssMI GATC 3 cut(s) 322, 412, 421
BssSI CACGAG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 87, 455
BstF5I GGATG 2 cut(s) 179, 331
BstKTI GATC 3 cut(s) 325, 415, 424
BstMBI GATC 3 cut(s) 322, 412, 421
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 139, 446
BstXI CCANNNNNNTGG 1 cut(s) 271
BtrI CACGTC 1 cut(s) 221
BtsCI GGATG 2 cut(s) 179, 331
Cac8I GCNNGC 1 cut(s) 370
CseI GACGC 1 cut(s) 119
CviJI RGCY 3 cut(s) 169, 232, 437
CviKI_1 RGCY 3 cut(s) 169, 232, 437
DdeI CTNAG 2 cut(s) 87, 455
DpnI GATC 3 cut(s) 324, 414, 423
DpnII GATC 3 cut(s) 322, 412, 421
EcoRII CCWGG 1 cut(s) 95
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 128, 435
FokI GGATG 2 cut(s) 186, 318
Fsp4HI GCNGC 2 cut(s) 128, 435
GluI GCNGC 2 cut(s) 128, 435
HgaI GACGC 1 cut(s) 119
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 4 cut(s) 8, 56, 102, 539
HphI GGTGA 2 cut(s) 286, 554
Hpy166II GTNNAC 2 cut(s) 245, 520
Hpy188I TCNGA 3 cut(s) 13, 61, 544
Hpy188III TCNNGA 3 cut(s) 291, 419, 443
Hpy8I GTNNAC 2 cut(s) 245, 520
Hpy99I CGWCG 3 cut(s) 135, 138, 168
HpyAV CCTTC 3 cut(s) 8, 245, 271
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4IV ACGT 2 cut(s) 220, 471
HpyCH4V TGCA 4 cut(s) 127, 245, 258, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 2 cut(s) 87, 455
HpySE526I ACGT 2 cut(s) 220, 471
Kzo9I GATC 3 cut(s) 322, 412, 421
LpnPI CCDG 5 cut(s) 82, 109, 247, 276, 404
Lsp1109I GCAGC 2 cut(s) 139, 446
LweI GCATC 1 cut(s) 58
MaeII ACGT 2 cut(s) 220, 471
MaeIII GTNAC 3 cut(s) 176, 304, 343
MalI GATC 3 cut(s) 324, 414, 423
MboI GATC 3 cut(s) 322, 412, 421
MboII GAAGA 3 cut(s) 74, 77, 500
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 3 cut(s) 50, 77, 407
MlyI GAGTC 2 cut(s) 65, 111
MnlI CCTC 5 cut(s) 11, 131, 345, 385, 469
MspA1I CMGCKG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 369
NdeII GATC 3 cut(s) 322, 412, 421
NlaIV GGNNCC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 8, 539
PkrI GCNGC 2 cut(s) 129, 436
PleI GAGTC 2 cut(s) 64, 110
PpsI GAGTC 2 cut(s) 64, 110
Psp1406I AACGTT 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 22
SatI GCNGC 2 cut(s) 128, 435
Sau3AI GATC 3 cut(s) 322, 412, 421
SchI GAGTC 2 cut(s) 65, 111
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 247
SetI ASST 9 cut(s) 22, 37, 142, 190, 223, 256, 282, 439, 474
SfaNI GCATC 1 cut(s) 58
Sse9I AATT 3 cut(s) 50, 77, 407
SsiI CCGC 2 cut(s) 368, 498
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 566
TaiI ACGT 2 cut(s) 223, 474
TaqI TCGA 2 cut(s) 136, 442
TasI AATT 3 cut(s) 50, 77, 407
TfiI GAWTC 2 cut(s) 8, 539
TseI GCWGC 2 cut(s) 127, 434
TspDTI ATGAA 1 cut(s) 451
TspGWI ACGGA 2 cut(s) 13, 107
VneI GTGCAC 1 cut(s) 243
XapI RAATTY 2 cut(s) 50, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.