FvH4_2g17602

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011730
Physical Location & Seq
Forward (+)
15136925 .. 15139686
2762 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17602.t1

Sequence Viewer

Length: 882 bp
ATGAATGATATTTTGAATACATCTAAACTTCTATTCATTTTAAAAATAAAAACGCAAAAGAAAGAAGAAGAAGAAATTAAACTACTCTCACTGACGAGGTTTGACCCTTTCCTCTTTTTCTTCCTCTGCGCCTGTCTCTGGTCACCCAAATCAGTCCGCGCAAGCCCAGAAGAAGAAGATCTTCGGACTCCGATACCATTCACAACTACTCTGACCACTCAATTTCCGGCTTTCGTTAAAATGGATTTGGAGGATGAGGAGGATGAGGAGGAGGAAGTTGGGGCAGTTGGTGGGTCTGCTGAAGTAAACATGGGCGGTTCAGAAGGAGGTCCTGTTGGAGAACCTTATGTTGGTATGGAATTTGATAGTGAAGAAGATGCCAAGAAATTTTACATTGAGTATGCCAGGCGAGTTGGGTTTTCTGTCCGTGTTATGCAGCGTCGACGAGGTATTGATGGGACGACTCTTGCCCGTCGCCTTGGATGTAACAAACAAGGTTTCTCTCCCAACCATAAGGGGAAACTTGGGCATGAGAAAAGGCCCAGACTAAGTGCACGAGAAGGTTGCAACGCGACAATCTTGGTGAAGATGGATAAATCTGGTAAATGGGTGGTTACAAGATTTGTAAAGGATCATAATCATCCTCTCATTGTTACTGCCAATGAGTTCAGCACAGCGGGTGACAAGGATAAGAAAATAGAGGAACTTATGATGGAATTGGATCATCAGGATCAACTATGTGCAGCTTATCGAGAAAAACTACTCAGTTTCATAAATAATGTTGAGGCAGAAACAGAAGAACTTTCTGCAAAGATACAAGCGATTGTTGACAATGTGAGAAAAGTTGAATCTGAAACGCAGAAAAAATCTCGCTGTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

294

Amino Acids

33.31

Weight (kDa)

5.75

Isoelectric Point (pI)

55.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 129 - 217 2.4e-27 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 442
AccII CGCG 2 cut(s) 159, 572
AciI CCGC 3 cut(s) 157, 315, 677
AclWI GGATC 3 cut(s) 639, 729, 738
AcsI RAATTY 2 cut(s) 359, 386
AcuI CTGAAG 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 138, 350
AgsI TTSAA 2 cut(s) 16, 848
AjnI CCWGG 1 cut(s) 404
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 1 cut(s) 746
AluI AGCT 1 cut(s) 746
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 1 cut(s) 140
Alw44I GTGCAC 1 cut(s) 552
AlwI GGATC 3 cut(s) 639, 729, 738
AoxI GGCC 1 cut(s) 539
ApaLI GTGCAC 1 cut(s) 552
ApeKI GCWGC 2 cut(s) 436, 743
ApoI RAATTY 2 cut(s) 359, 386
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 2 cut(s) 131, 161
AspS9I GGNCC 2 cut(s) 329, 540
AsuHPI GGTGA 3 cut(s) 135, 595, 692
AvaII GGWCC 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 556
BauI CACGAG 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 2 cut(s) 448, 755
BccI CCATC 3 cut(s) 449, 583, 706
BcgI CGANNNNNNTGC 2 cut(s) 546, 580
BciT130I CCWGG 1 cut(s) 406
BcoDI GTCTC 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 874
BglII AGATCT 1 cut(s) 178
BisI GCNGC 2 cut(s) 437, 744
BlsI GCNGC 2 cut(s) 438, 745
Bme1390I CCNGG 1 cut(s) 406
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 2 cut(s) 329, 540
BmrFI CCNGG 1 cut(s) 406
BmsI GCATC 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 636
BsaJI CCNNGG 1 cut(s) 478
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 350
Bse8I GATNNNNATC 1 cut(s) 636
BseBI CCWGG 1 cut(s) 406
BseDI CCNNGG 1 cut(s) 478
BseGI GGATG 4 cut(s) 259, 268, 488, 640
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 2 cut(s) 138, 350
BseMII CTCAG 1 cut(s) 778
BseRI GAGGAG 3 cut(s) 272, 281, 284
BseSI GKGCMC 1 cut(s) 556
BseXI GCAGC 2 cut(s) 448, 755
BsgI GTGCAG 1 cut(s) 762
Bsh1236I CGCG 2 cut(s) 159, 572
BshFI GGCC 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 556
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 2 cut(s) 138, 350
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 4 cut(s) 178, 631, 721, 730
BspACI CCGC 3 cut(s) 157, 315, 677
BspANI GGCC 1 cut(s) 541
BspCNI CTCAG 1 cut(s) 777
BspFNI CGCG 2 cut(s) 159, 572
BspPI GGATC 3 cut(s) 639, 729, 738
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 4 cut(s) 178, 631, 721, 730
BssSI CACGAG 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 478
Bst2BI CACGAG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 163
BstDEI CTNAG 2 cut(s) 548, 764
BstEII GGTNACC 1 cut(s) 141
BstF5I GGATG 4 cut(s) 259, 268, 488, 640
BstFNI CGCG 2 cut(s) 159, 572
BstHHI GCGC 2 cut(s) 131, 161
BstKTI GATC 4 cut(s) 181, 634, 724, 733
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 4 cut(s) 178, 631, 721, 730
BstNI CCWGG 1 cut(s) 406
BstPI GGTNACC 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 404
BstSFI CTRYAG 1 cut(s) 874
BstSLI GKGCMC 1 cut(s) 556
BstUI CGCG 2 cut(s) 159, 572
BstV1I GCAGC 2 cut(s) 448, 755
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 541
BtsCI GGATG 4 cut(s) 259, 268, 488, 640
BtsIMutI CAGTG 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 163
CfoI GCGC 2 cut(s) 131, 161
Cfr13I GGNCC 2 cut(s) 329, 540
CseI GACGC 1 cut(s) 428
CviAII CATG 2 cut(s) 310, 530
CviJI RGCY 4 cut(s) 165, 230, 541, 746
CviKI_1 RGCY 4 cut(s) 165, 230, 541, 746
DdeI CTNAG 2 cut(s) 548, 764
DpnI GATC 4 cut(s) 180, 633, 723, 732
DpnII GATC 4 cut(s) 178, 631, 721, 730
DraI TTTAAA 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 321
Eco91I GGTNACC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 329
EcoO65I GGTNACC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 2 cut(s) 313, 533
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 1 cut(s) 472
FatI CATG 2 cut(s) 309, 529
FauI CCCGC 1 cut(s) 670
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 437, 744
FokI GGATG 4 cut(s) 266, 275, 495, 627
Fsp4HI GCNGC 2 cut(s) 437, 744
GlaI GCGC 2 cut(s) 130, 160
GluI GCNGC 2 cut(s) 437, 744
HaeIII GGCC 1 cut(s) 541
HapII CCGG 1 cut(s) 227
HgaI GACGC 1 cut(s) 428
HhaI GCGC 2 cut(s) 131, 161
Hin1II CATG 2 cut(s) 313, 533
Hin6I GCGC 2 cut(s) 129, 159
HinP1I GCGC 2 cut(s) 129, 159
HincII GTYRAC 2 cut(s) 443, 829
HindII GTYRAC 2 cut(s) 443, 829
HinfI GANTC 3 cut(s) 187, 463, 848
HpaII CCGG 1 cut(s) 227
HphI GGTGA 3 cut(s) 135, 595, 692
Hpy166II GTNNAC 4 cut(s) 307, 443, 554, 829
Hpy188I TCNGA 5 cut(s) 186, 192, 213, 322, 853
Hpy188III TCNNGA 2 cut(s) 728, 752
Hpy8I GTNNAC 4 cut(s) 307, 443, 554, 829
Hpy99I CGWCG 3 cut(s) 444, 447, 477
HpyAV CCTTC 2 cut(s) 317, 554
HpyCH4V TGCA 5 cut(s) 436, 554, 567, 743, 809
HpyF3I CTNAG 2 cut(s) 548, 764
Hsp92II CATG 2 cut(s) 313, 533
HspAI GCGC 2 cut(s) 129, 159
Kzo9I GATC 4 cut(s) 178, 631, 721, 730
Lsp1109I GCAGC 2 cut(s) 448, 755
LweI GCATC 1 cut(s) 367
MaeIII GTNAC 5 cut(s) 141, 485, 613, 652, 680
MalI GATC 4 cut(s) 180, 633, 723, 732
MboI GATC 4 cut(s) 178, 631, 721, 730
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 5 cut(s) 75, 221, 359, 386, 716
MlyI GAGTC 2 cut(s) 181, 457
MmeI TCCRAC 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 3 cut(s) 41, 78, 237
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 406
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 2 cut(s) 159, 572
NdeII GATC 4 cut(s) 178, 631, 721, 730
NlaIII CATG 2 cut(s) 313, 533
NmuCI GTSAC 2 cut(s) 141, 680
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 848
PkrI GCNGC 2 cut(s) 438, 745
PleI GAGTC 2 cut(s) 181, 457
PpsI GAGTC 2 cut(s) 181, 457
PpuMI RGGWCCY 1 cut(s) 329
Psp5II RGGWCCY 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 404
PspEI GGTNACC 1 cut(s) 141
PspGI CCWGG 1 cut(s) 404
PspPI GGNCC 2 cut(s) 329, 540
PspPPI RGGWCCY 1 cut(s) 329
PsuI RGATCY 1 cut(s) 178
SalI GTCGAC 1 cut(s) 441
SaqAI TTAA 3 cut(s) 41, 78, 237
SatI GCNGC 2 cut(s) 437, 744
Sau3AI GATC 4 cut(s) 178, 631, 721, 730
Sau96I GGNCC 2 cut(s) 329, 540
SchI GAGTC 2 cut(s) 181, 457
ScrFI CCNGG 1 cut(s) 406
SduI GDGCHC 1 cut(s) 556
SetI ASST 7 cut(s) 101, 331, 346, 451, 499, 565, 748
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 874
SgrDI CGTCGACG 1 cut(s) 441
SinI GGWCC 1 cut(s) 329
Sse9I AATT 5 cut(s) 75, 221, 359, 386, 716
SsiI CCGC 3 cut(s) 157, 315, 677
StyD4I CCNGG 1 cut(s) 404
StyI CCWWGG 1 cut(s) 478
TaqI TCGA 2 cut(s) 442, 751
TasI AATT 5 cut(s) 75, 221, 359, 386, 716
TfiI GAWTC 1 cut(s) 848
Tru1I TTAA 3 cut(s) 41, 78, 237
Tru9I TTAA 3 cut(s) 41, 78, 237
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 2 cut(s) 141, 680
TseI GCWGC 2 cut(s) 436, 743
Tsp45I GTSAC 2 cut(s) 141, 680
TspDTI ATGAA 3 cut(s) 17, 25, 760
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 1 cut(s) 96
VneI GTGCAC 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 2 cut(s) 359, 386
XmiI GTMKAC 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.