Rroxscaffold_7G00186260

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011730
Physical Location & Seq
Reverse (-)
25609712 .. 25612209
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186260.1

Sequence Viewer

Length: 630 bp
ATGGATTTGGATGAGGAGGAGGAAGTTGGGGCAGTTGATGGGTCTGTTGAAGTAAACATGGGCGATTCAGAAGGAGGTTCCATTATAGAACCTTATGTTGGTATGGAATTTCAGTCCGAAGAAGATGCCAAGAAATTCTATACTGAGTATGCCAGGAGAGTCGGTTTTTTTGTCCGTGTTATGCAGCGTCGTCGAGGTATTGATGGGAGAACTCTTGCCCGTCGGCTTGGATGTAACAAACAAGGTTTTTCTCCCAACCAAAAGGGAAATCTTGGACGTGAAAAAAAGCCCAGAGTCAGTGCACGAGAAGGTTGCAACGCGACAATCTTGGTGAAGGTGGATAAATCTGGAAAATGGCTGGTTACAAGATTTGTAAAGGATCATAATCATCCTCTCATTGTCACTGCCAATGAGTTTAGCACTGCGGGCGACAAGGATAAGAAAATAGAGGAACTTATGATGGAATTGGATCATCAGGATCAACAATGTGCAGCTTATCGAGAAAAACTACTCAGTTTCATAAATAACGTTGAGGCAGAAACAGAAGAACTTTCCGCAAAGATAAAAGCGATTGTTGACAATGTGAGAAAAGTTGAATCCGAAACGCAAAAACATTCTCACCGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

209

Amino Acids

23.75

Weight (kDa)

6.26

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 45 - 133 5.9e-27 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 320
AciI CCGC 2 cut(s) 425, 555
AclI AACGTT 1 cut(s) 528
AclWI GGATC 3 cut(s) 387, 477, 486
AcsI RAATTY 2 cut(s) 107, 134
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 2 cut(s) 50, 596
AjiI CACGTC 1 cut(s) 278
AjnI CCWGG 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AluBI AGCT 1 cut(s) 494
AluI AGCT 1 cut(s) 494
Alw21I GWGCWC 1 cut(s) 304
Alw44I GTGCAC 1 cut(s) 300
AlwI GGATC 3 cut(s) 387, 477, 486
ApaLI GTGCAC 1 cut(s) 300
ApeKI GCWGC 2 cut(s) 184, 491
ApoI RAATTY 2 cut(s) 107, 134
AsuHPI GGTGA 2 cut(s) 343, 611
BaeGI GKGCMC 1 cut(s) 304
BauI CACGAG 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 196, 503
BccI CCATC 3 cut(s) 32, 197, 454
BcgI CGANNNNNNTGC 6 cut(s) 107, 141, 173, 207, 294, 328
BciT130I CCWGG 1 cut(s) 154
BisI GCNGC 2 cut(s) 185, 492
BlsI GCNGC 2 cut(s) 186, 493
Bme1390I CCNGG 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 384
BseBI CCWGG 1 cut(s) 154
BseGI GGATG 3 cut(s) 16, 236, 388
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 2 cut(s) 135, 526
BseRI GAGGAG 2 cut(s) 29, 32
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 2 cut(s) 196, 503
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 3 cut(s) 379, 469, 478
BspACI CCGC 2 cut(s) 425, 555
BspCNI CTCAG 2 cut(s) 136, 525
BspFNI CGCG 1 cut(s) 320
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 3 cut(s) 387, 477, 486
BssMI GATC 3 cut(s) 379, 469, 478
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 2 cut(s) 144, 512
BstF5I GGATG 3 cut(s) 16, 236, 388
BstFNI CGCG 1 cut(s) 320
BstKTI GATC 3 cut(s) 382, 472, 481
BstMBI GATC 3 cut(s) 379, 469, 478
BstMWI GCNNNNNNNGC 1 cut(s) 426
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstSLI GKGCMC 1 cut(s) 304
BstUI CGCG 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 196, 503
BtrI CACGTC 1 cut(s) 278
BtsCI GGATG 3 cut(s) 16, 236, 388
BtsI GCAGTG 2 cut(s) 402, 420
BtsIMutI CAGTG 3 cut(s) 304, 402, 420
Cac8I GCNNGC 1 cut(s) 427
CseI GACGC 1 cut(s) 176
CviAII CATG 1 cut(s) 58
CviJI RGCY 4 cut(s) 226, 289, 358, 494
CviKI_1 RGCY 4 cut(s) 226, 289, 358, 494
DdeI CTNAG 2 cut(s) 144, 512
DpnI GATC 3 cut(s) 381, 471, 480
DpnII GATC 3 cut(s) 379, 469, 478
EcoRII CCWGG 1 cut(s) 152
FaeI CATG 1 cut(s) 61
FatI CATG 1 cut(s) 57
FauI CCCGC 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 185, 492
FokI GGATG 3 cut(s) 23, 243, 375
Fsp4HI GCNGC 2 cut(s) 185, 492
GluI GCNGC 2 cut(s) 185, 492
HgaI GACGC 1 cut(s) 176
Hin1II CATG 1 cut(s) 61
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 4 cut(s) 65, 159, 294, 596
HphI GGTGA 2 cut(s) 343, 611
Hpy166II GTNNAC 3 cut(s) 55, 302, 577
Hpy188I TCNGA 3 cut(s) 70, 118, 601
Hpy188III TCNNGA 3 cut(s) 348, 476, 500
Hpy8I GTNNAC 3 cut(s) 55, 302, 577
Hpy99I CGWCG 3 cut(s) 192, 195, 225
HpyAV CCTTC 3 cut(s) 65, 302, 328
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 2 cut(s) 277, 528
HpyCH4V TGCA 4 cut(s) 184, 302, 315, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 426
HpyF3I CTNAG 2 cut(s) 144, 512
HpySE526I ACGT 2 cut(s) 277, 528
Hsp92II CATG 1 cut(s) 61
Kzo9I GATC 3 cut(s) 379, 469, 478
LpnPI CCDG 6 cut(s) 139, 166, 304, 333, 344, 461
Lsp1109I GCAGC 2 cut(s) 196, 503
LweI GCATC 1 cut(s) 115
MaeII ACGT 2 cut(s) 277, 528
MaeIII GTNAC 3 cut(s) 233, 361, 400
MalI GATC 3 cut(s) 381, 471, 480
MboI GATC 3 cut(s) 379, 469, 478
MboII GAAGA 3 cut(s) 131, 134, 557
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 3 cut(s) 107, 134, 464
MlyI GAGTC 2 cut(s) 168, 303
MnlI CCTC 8 cut(s) 7, 10, 13, 68, 188, 402, 442, 526
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 1 cut(s) 426
NdeII GATC 3 cut(s) 379, 469, 478
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 400
PfeI GAWTC 2 cut(s) 65, 596
PkrI GCNGC 2 cut(s) 186, 493
PleI GAGTC 2 cut(s) 167, 302
PpsI GAGTC 2 cut(s) 167, 302
Psp1406I AACGTT 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 79
SatI GCNGC 2 cut(s) 185, 492
Sau3AI GATC 3 cut(s) 379, 469, 478
SchI GAGTC 2 cut(s) 168, 303
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 1 cut(s) 304
SetI ASST 9 cut(s) 79, 94, 199, 247, 280, 313, 339, 496, 531
SfaNI GCATC 1 cut(s) 115
Sse9I AATT 3 cut(s) 107, 134, 464
SsiI CCGC 2 cut(s) 425, 555
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 2 cut(s) 280, 531
TaqI TCGA 2 cut(s) 193, 499
TasI AATT 3 cut(s) 107, 134, 464
TfiI GAWTC 2 cut(s) 65, 596
TscAI CASTG 3 cut(s) 304, 409, 427
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 2 cut(s) 184, 491
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 1 cut(s) 508
TspGWI ACGGA 1 cut(s) 164
TspRI CASTG 3 cut(s) 304, 409, 427
VneI GTGCAC 1 cut(s) 300
XapI RAATTY 2 cut(s) 107, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.