Rh6CG263100

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011730
Physical Location & Seq
Forward (+)
43617246 .. 43619801
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG263100.1

Sequence Viewer

Length: 555 bp
ATGGGCGATTCAGAAGGAGGTTCCGTTATAGAACCTTATGTTGGTATGGAATTTGAGTCCGAAGAAGATGCCAAGAAATTCTATACTGAGTATGCCAGGCGAGTCGGTTTTTTTGTCCGTGTTATGCAGCGTCGTCGAGGTATTGATGGGAGAACTCTTGCCCGTCGGCTTGGATGTAACAAACAAGGTTTTTCTCCCAACCATAAGGGAAATCTTGGACGTGAAAAAAAGCCCAGAGTTAGTGCACGAGAAGGTTGCAATGCCACAATCTTGGTGAAGGTGGATAAATCTGGAAAATGGGTGGTTACAAGATTTGTAAAGGATCATAATCATCCTCTCATTGTTACTGCCAATGAGTTTAGCACAGCGGTGAGCTTCTTTAAGTTACTTAACTACCTGGATTATCACTTTCCTTGTTCATCGTATATCTTTTATTATTATTTTTTCAAGGTCCTTGTTTCTTGGTTGATTTTCTCCATCTTTTTCTTTTCCTATATGAATCTTTTGGTGATCTTACGAACCCAAACTGAACTTAATGTCCTTCAAGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

184

Amino Acids

21.51

Weight (kDa)

9.42

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 26 - 114 3.5e-27 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 368
AclWI GGATC 1 cut(s) 330
AcsI RAATTY 2 cut(s) 50, 77
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 448, 545
AjiI CACGTC 1 cut(s) 221
AjnI CCWGG 2 cut(s) 95, 396
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AleI CACNNNNGTG 1 cut(s) 368
AloI GAACNNNNNNTCC 2 cut(s) 522, 554
AluBI AGCT 1 cut(s) 375
AluI AGCT 1 cut(s) 375
Alw21I GWGCWC 1 cut(s) 247
Alw44I GTGCAC 1 cut(s) 243
AlwI GGATC 1 cut(s) 330
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 2 cut(s) 50, 77
AspS9I GGNCC 1 cut(s) 451
AsuHPI GGTGA 3 cut(s) 286, 382, 520
AvaII GGWCC 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 247
BauI CACGAG 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 140, 485
BcgI CGANNNNNNTGC 6 cut(s) 50, 84, 116, 150, 237, 271
BciT130I CCWGG 2 cut(s) 97, 398
BisI GCNGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 129
Bme1390I CCNGG 2 cut(s) 97, 398
Bme18I GGWCC 1 cut(s) 451
BmgBI CACGTC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 97, 398
BmsI GCATC 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 265
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 2 cut(s) 97, 398
BseGI GGATG 2 cut(s) 179, 331
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 322, 510
BspACI CCGC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 265
BssMI GATC 2 cut(s) 322, 510
BssSI CACGAG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 97, 398
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 2 cut(s) 179, 331
BstKTI GATC 2 cut(s) 325, 513
BstMBI GATC 2 cut(s) 322, 510
BstNI CCWGG 2 cut(s) 97, 398
BstSCI CCNGG 2 cut(s) 95, 396
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 271
BtrI CACGTC 1 cut(s) 221
BtsCI GGATG 2 cut(s) 179, 331
Cfr13I GGNCC 1 cut(s) 451
CseI GACGC 1 cut(s) 119
CviJI RGCY 3 cut(s) 169, 232, 375
CviKI_1 RGCY 3 cut(s) 169, 232, 375
DdeI CTNAG 1 cut(s) 87
DpnI GATC 2 cut(s) 324, 512
DpnII GATC 2 cut(s) 322, 510
Eco47I GGWCC 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 95, 396
Fnu4HI GCNGC 1 cut(s) 128
FokI GGATG 2 cut(s) 186, 318
Fsp4HI GCNGC 1 cut(s) 128
GluI GCNGC 1 cut(s) 128
HgaI GACGC 1 cut(s) 119
HinfI GANTC 4 cut(s) 8, 56, 102, 499
HphI GGTGA 3 cut(s) 286, 382, 520
Hpy166II GTNNAC 1 cut(s) 245
Hpy188I TCNGA 2 cut(s) 13, 61
Hpy188III TCNNGA 2 cut(s) 291, 545
Hpy8I GTNNAC 1 cut(s) 245
Hpy99I CGWCG 3 cut(s) 135, 138, 168
HpyAV CCTTC 4 cut(s) 8, 245, 271, 551
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 3 cut(s) 127, 245, 258
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 220
Kzo9I GATC 2 cut(s) 322, 510
LpnPI CCDG 6 cut(s) 82, 109, 247, 276, 383, 410
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 58
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 4 cut(s) 176, 304, 343, 384
MalI GATC 2 cut(s) 324, 512
MboI GATC 2 cut(s) 322, 510
MboII GAAGA 2 cut(s) 74, 77
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 2 cut(s) 50, 77
MlyI GAGTC 2 cut(s) 65, 111
MnlI CCTC 3 cut(s) 11, 131, 345
MseI TTAA 3 cut(s) 381, 390, 534
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 97, 398
MvaI CCWGG 2 cut(s) 97, 398
NdeII GATC 2 cut(s) 322, 510
NlaIV GGNNCC 1 cut(s) 22
OliI CACNNNNGTG 1 cut(s) 368
PfeI GAWTC 2 cut(s) 8, 499
PkrI GCNGC 1 cut(s) 129
PleI GAGTC 2 cut(s) 64, 110
PpsI GAGTC 2 cut(s) 64, 110
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 2 cut(s) 95, 396
PspGI CCWGG 2 cut(s) 95, 396
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 451
PspPPI RGGWCCY 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 368
SaqAI TTAA 3 cut(s) 381, 390, 534
SatI GCNGC 1 cut(s) 128
Sau3AI GATC 2 cut(s) 322, 510
Sau96I GGNCC 1 cut(s) 451
SchI GAGTC 2 cut(s) 65, 111
ScrFI CCNGG 2 cut(s) 97, 398
SduI GDGCHC 1 cut(s) 247
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 368
Sse9I AATT 2 cut(s) 50, 77
SsiI CCGC 1 cut(s) 368
StyD4I CCNGG 2 cut(s) 95, 396
TaiI ACGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 136
TasI AATT 2 cut(s) 50, 77
TfiI GAWTC 2 cut(s) 8, 499
Tru1I TTAA 3 cut(s) 381, 390, 534
Tru9I TTAA 3 cut(s) 381, 390, 534
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 408, 512
TspGWI ACGGA 2 cut(s) 13, 107
VneI GTGCAC 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 2 cut(s) 50, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.