Rh6BG264000

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011730
Physical Location & Seq
Forward (+)
47908230 .. 47910744
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG264000.1

Sequence Viewer

Length: 639 bp
ATGACAGTGGATTTGGATGAGGAGGAGGAGGAAGTTGGGCCAGTTGATGGGTCTGTTGAAGTAAACATGGGCGATTCAGAAGGAGGTTCCGTTATAGAACCTTATGTTGGTATGGAATTTCAGTCCGAAGAAGATGCCAAGAAATTCTATACTGAGTATGCCAGGCGAGTTGGTTTTTTTGTCCGTGTTATGCAGCGTCGTCGAGGTATTGATGGGAGAACTCTTGCCCGTCGGCTTGGATGTAACAAACAAGGTTTTTCTCCCAACCACAAGGGAAATCTTGGACGTGAAAAAAAGCCCAGAGTTAGTGCACGAGAAGGTTGCAATGCCACAATCTTGGTGAAGGTGGATAAATCTGGAAAATGGGTGGTTACAAGATTTGTAAAGGATCATAATCATCCTCTCATTGTTACTGCCAATGAGTTTAGCACAGCGGGCGACAAGGATAAGAAAATAGAGGAACTTATGATGGAATTAGATCATCAGGATCAACTATGTGCAGCTTATCGAGAAAGACTACTCAGTTTCATAAATAACGTTGAGGCAGAAACAGAAGAACTTTCCGCAAAGATAAAAGCGATTGTTGACAATGTGAGAAAAGTTGAATCTGAAACGCAAAAACATTCTCACCGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

212

Amino Acids

24.1

Weight (kDa)

6.13

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 48 - 136 5e-27 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 47
AciI CCGC 2 cut(s) 434, 564
AclI AACGTT 1 cut(s) 537
AclWI GGATC 2 cut(s) 396, 495
AcsI RAATTY 2 cut(s) 116, 143
AfiI CCNNNNNNNGG 2 cut(s) 47, 107
AgsI TTSAA 2 cut(s) 59, 605
AjiI CACGTC 1 cut(s) 287
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AluBI AGCT 1 cut(s) 503
AluI AGCT 1 cut(s) 503
Alw21I GWGCWC 1 cut(s) 313
Alw44I GTGCAC 1 cut(s) 309
AlwI GGATC 2 cut(s) 396, 495
AoxI GGCC 1 cut(s) 38
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 2 cut(s) 193, 500
ApoI RAATTY 2 cut(s) 116, 143
ArsI GACNNNNNNTTYG 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 352, 620
BaeGI GKGCMC 1 cut(s) 313
BauI CACGAG 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 205, 512
BccI CCATC 3 cut(s) 41, 206, 463
BcgI CGANNNNNNTGC 6 cut(s) 116, 150, 182, 216, 303, 337
BciT130I CCWGG 1 cut(s) 163
BisI GCNGC 2 cut(s) 194, 501
BlsI GCNGC 2 cut(s) 195, 502
Bme1390I CCNGG 1 cut(s) 163
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 393
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 107
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 1 cut(s) 163
BseGI GGATG 3 cut(s) 22, 245, 397
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 47, 107
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 2 cut(s) 144, 535
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 3 cut(s) 35, 38, 41
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 2 cut(s) 205, 512
BsgI GTGCAG 1 cut(s) 519
BshFI GGCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 47, 107
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 3 cut(s) 388, 478, 487
BspACI CCGC 2 cut(s) 434, 564
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 2 cut(s) 145, 534
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 2 cut(s) 396, 495
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 41
BssMI GATC 3 cut(s) 388, 478, 487
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 7, 632
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 153, 521
BstF5I GGATG 3 cut(s) 22, 245, 397
BstKTI GATC 3 cut(s) 391, 481, 490
BstMBI GATC 3 cut(s) 388, 478, 487
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 161
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 205, 512
BstXI CCANNNNNNTGG 1 cut(s) 337
BsuRI GGCC 1 cut(s) 40
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 3 cut(s) 22, 245, 397
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 38
CseI GACGC 1 cut(s) 185
CviAII CATG 1 cut(s) 67
CviJI RGCY 4 cut(s) 40, 235, 298, 503
CviKI_1 RGCY 4 cut(s) 40, 235, 298, 503
DdeI CTNAG 2 cut(s) 153, 521
DpnI GATC 3 cut(s) 390, 480, 489
DpnII GATC 3 cut(s) 388, 478, 487
EcoRII CCWGG 1 cut(s) 161
FaeI CATG 1 cut(s) 70
FatI CATG 1 cut(s) 66
FauI CCCGC 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 194, 501
FokI GGATG 3 cut(s) 29, 252, 384
Fsp4HI GCNGC 2 cut(s) 194, 501
GluI GCNGC 2 cut(s) 194, 501
HaeIII GGCC 1 cut(s) 40
HgaI GACGC 1 cut(s) 185
Hin1II CATG 1 cut(s) 70
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 2 cut(s) 74, 605
HphI GGTGA 2 cut(s) 352, 620
Hpy166II GTNNAC 3 cut(s) 64, 311, 586
Hpy188I TCNGA 3 cut(s) 79, 127, 610
Hpy188III TCNNGA 3 cut(s) 357, 485, 509
Hpy8I GTNNAC 3 cut(s) 64, 311, 586
Hpy99I CGWCG 3 cut(s) 201, 204, 234
HpyAV CCTTC 3 cut(s) 74, 311, 337
HpyCH4III ACNGT 2 cut(s) 7, 632
HpyCH4IV ACGT 2 cut(s) 286, 537
HpyCH4V TGCA 4 cut(s) 193, 311, 324, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 2 cut(s) 153, 521
HpySE526I ACGT 2 cut(s) 286, 537
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 3 cut(s) 388, 478, 487
LpnPI CCDG 6 cut(s) 54, 148, 175, 313, 342, 470
Lsp1109I GCAGC 2 cut(s) 205, 512
LweI GCATC 1 cut(s) 124
MaeII ACGT 2 cut(s) 286, 537
MaeIII GTNAC 3 cut(s) 242, 370, 409
MalI GATC 3 cut(s) 390, 480, 489
MboI GATC 3 cut(s) 388, 478, 487
MboII GAAGA 3 cut(s) 140, 143, 566
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 3 cut(s) 116, 143, 473
MnlI CCTC 9 cut(s) 13, 16, 19, 22, 77, 197, 411, 451, 535
MspA1I CMGCKG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 435
NdeII GATC 3 cut(s) 388, 478, 487
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 74, 605
PflMI CCANNNNNTGG 1 cut(s) 47
PkrI GCNGC 2 cut(s) 195, 502
Psp1406I AACGTT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 38
SatI GCNGC 2 cut(s) 194, 501
Sau3AI GATC 3 cut(s) 388, 478, 487
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 313
SetI ASST 9 cut(s) 88, 103, 208, 256, 289, 322, 348, 505, 540
SfaNI GCATC 1 cut(s) 124
Sse9I AATT 3 cut(s) 116, 143, 473
SsiI CCGC 2 cut(s) 434, 564
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 7, 632
TaiI ACGT 2 cut(s) 289, 540
TaqI TCGA 2 cut(s) 202, 508
TasI AATT 3 cut(s) 116, 143, 473
TfiI GAWTC 2 cut(s) 74, 605
TscAI CASTG 1 cut(s) 12
TseI GCWGC 2 cut(s) 193, 500
TspDTI ATGAA 1 cut(s) 517
TspGWI ACGGA 2 cut(s) 79, 173
TspRI CASTG 1 cut(s) 12
Van91I CCANNNNNTGG 1 cut(s) 47
VneI GTGCAC 1 cut(s) 309
XapI RAATTY 2 cut(s) 116, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.