Prupe.8G188400_v2.0.a1

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011730
Physical Location & Seq
Forward (+)
18466440 .. 18468847
2408 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G188400.1

Sequence Viewer

Length: 624 bp
ATGGATTTGGAAAGGGAAGCCGGGGCAGTAGATGAGTCTGTTGAAATGGCCATAGTTGCTTCAGAAGGTCCAATTCCGGAACCTTATGTGGGTATGGAATTCGATTCTGAAGATGCCGCCAGGAAATACTATACTGATTATGCCAGACAGGTCGGATTTGTCGTTCGTGTTATGCAGCGTCGTCGATCAGGCATTGATGGGAGAACTCTTGCCCGTCGGCTTGGGTGTAACAAACAAGGGTTTTCTCCTAACCAGAAGGGGAAATTTGGACCTGAGAAAAAGCCTAGACCTAGTGCACGAGAGGGTTGCAATGCAACAATCTTGGTGAAGATGGAAAAATCTGGAAAATGGGTTGTTACAAGGTTTGTAAAGGATCATAATCATCCTCTGGTTGTTACTGCCAGTGGTTTTAGCACAGCGGGTGATAAGGATAGGAAAATTGAGGAACTTATGATGGAGTTGGAGCGTCAAGATCAGCTATGTGCAGGTTATAGAGAAAAACTTCTCAGTTTTATGAATAACGTTGAAGCAGAAACGGAAGAACTGTCGGAAAAGATACAAGTTATAGTTGACAATGTGAGAAAAGTTGAATCTGAAGTGCAAAAACATTCTCGTCGTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

208

Amino Acids

23.54

Weight (kDa)

8.37

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 476
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 2 cut(s) 117, 419
AclI AACGTT 1 cut(s) 522
AclWI GGATC 1 cut(s) 381
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 2 cut(s) 98, 263
AcuI CTGAAG 3 cut(s) 45, 129, 615
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 3 cut(s) 44, 527, 590
AjnI CCWGG 1 cut(s) 119
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 1 cut(s) 478
AluI AGCT 1 cut(s) 478
Alw21I GWGCWC 1 cut(s) 298
Alw44I GTGCAC 1 cut(s) 294
AlwI GGATC 1 cut(s) 381
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 1 cut(s) 48
ApaLI GTGCAC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 2 cut(s) 98, 263
Asp700I GAANNNNTTC 1 cut(s) 501
AspS9I GGNCC 2 cut(s) 68, 269
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 2 cut(s) 337, 434
AvaII GGWCC 2 cut(s) 68, 269
BaeGI GKGCMC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 50
BauI CACGAG 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 187
BccI CCATC 3 cut(s) 191, 325, 448
BcgI CGANNNNNNTGC 4 cut(s) 164, 198, 288, 322
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 1 cut(s) 22
BfaI CTAG 2 cut(s) 285, 291
BfuAI ACCTGC 1 cut(s) 476
BisI GCNGC 2 cut(s) 117, 176
BlsI GCNGC 2 cut(s) 118, 177
Bme1390I CCNGG 2 cut(s) 22, 121
Bme18I GGWCC 2 cut(s) 68, 269
BmgT120I GGNCC 2 cut(s) 68, 269
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 22, 121
BmsI GCATC 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 402
Bse3DI GCAATG 1 cut(s) 316
Bse8I GATNNNNATC 1 cut(s) 378
BseAI TCCGGA 1 cut(s) 76
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 382
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 264, 520
BseNI ACTGG 1 cut(s) 402
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 504
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 2 cut(s) 21, 77
BslI CCNNNNNNNGG 1 cut(s) 89
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 298
Bsp13I TCCGGA 1 cut(s) 76
Bsp143I GATC 3 cut(s) 185, 373, 472
BspACI CCGC 2 cut(s) 117, 419
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 265, 519
BspEI TCCGGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 316
BsrI ACTGG 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 3 cut(s) 185, 373, 472
BssSI CACGAG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 546
BstDEI CTNAG 2 cut(s) 273, 506
BstF5I GGATG 1 cut(s) 382
BstKTI GATC 3 cut(s) 188, 376, 475
BstMBI GATC 3 cut(s) 185, 373, 472
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 20, 119
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 382
BtsIMutI CAGTG 1 cut(s) 409
BveI ACCTGC 1 cut(s) 476
Cfr13I GGNCC 2 cut(s) 68, 269
CseI GACGC 2 cut(s) 167, 455
CviJI RGCY 5 cut(s) 20, 50, 220, 283, 478
CviKI_1 RGCY 5 cut(s) 20, 50, 220, 283, 478
DdeI CTNAG 2 cut(s) 273, 506
DpnI GATC 3 cut(s) 187, 375, 474
DpnII GATC 3 cut(s) 185, 373, 472
EaeI YGGCCR 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 68, 269
Eco57I CTGAAG 3 cut(s) 45, 129, 615
EcoRI GAATTC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 119
FauI CCCGC 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 117, 176
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 117, 176
FspBI CTAG 2 cut(s) 285, 291
GluI GCNGC 2 cut(s) 117, 176
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 21, 77
HgaI GACGC 2 cut(s) 167, 455
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 3 cut(s) 35, 104, 590
HpaII CCGG 2 cut(s) 21, 77
HphI GGTGA 2 cut(s) 337, 434
Hpy166II GTNNAC 2 cut(s) 296, 571
Hpy188I TCNGA 5 cut(s) 64, 109, 155, 550, 595
Hpy188III TCNNGA 3 cut(s) 77, 342, 470
Hpy8I GTNNAC 2 cut(s) 296, 571
Hpy99I CGWCG 4 cut(s) 183, 186, 219, 618
HpyAV CCTTC 2 cut(s) 59, 250
HpyCH4III ACNGT 1 cut(s) 546
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 6 cut(s) 175, 296, 309, 314, 485, 601
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 273, 506
HpySE526I ACGT 1 cut(s) 522
Kpn2I TCCGGA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 185, 373, 472
LmnI GCTCC 1 cut(s) 463
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 285, 291
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 3 cut(s) 227, 355, 394
MalI GATC 3 cut(s) 187, 375, 474
MboI GATC 3 cut(s) 185, 373, 472
MboII GAAGA 3 cut(s) 122, 340, 551
MhlI GDGCHC 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 4 cut(s) 72, 98, 263, 438
MluNI TGGCCA 1 cut(s) 50
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 3 cut(s) 133, 441, 528
MnlI CCTC 3 cut(s) 295, 396, 436
Mox20I TGGCCA 1 cut(s) 50
MroI TCCGGA 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 501
MscI TGGCCA 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 2 cut(s) 21, 77
MspR9I CCNGG 2 cut(s) 22, 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 1 cut(s) 22
NdeII GATC 3 cut(s) 185, 373, 472
NlaIV GGNNCC 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 2 cut(s) 104, 590
PkrI GCNGC 2 cut(s) 118, 177
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
Psp1406I AACGTT 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 2 cut(s) 68, 269
SatI GCNGC 2 cut(s) 117, 176
Sau3AI GATC 3 cut(s) 185, 373, 472
Sau96I GGNCC 2 cut(s) 68, 269
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 22, 121
SduI GDGCHC 1 cut(s) 298
SetI ASST 9 cut(s) 70, 85, 153, 274, 292, 365, 480, 490, 525
SfaNI GCATC 1 cut(s) 103
SinI GGWCC 2 cut(s) 68, 269
Sse9I AATT 4 cut(s) 72, 98, 263, 438
SsiI CCGC 2 cut(s) 117, 419
SspMI CTAG 2 cut(s) 285, 291
StyD4I CCNGG 2 cut(s) 20, 119
TaaI ACNGT 1 cut(s) 546
TaiI ACGT 1 cut(s) 525
TaqI TCGA 2 cut(s) 102, 184
TasI AATT 4 cut(s) 72, 98, 263, 438
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 2 cut(s) 104, 590
TscAI CASTG 1 cut(s) 409
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 530
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 1 cut(s) 409
VneI GTGCAC 1 cut(s) 294
VpaK11BI GGWCC 2 cut(s) 68, 269
XapI RAATTY 2 cut(s) 98, 263
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 2 cut(s) 285, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.