Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011730

Physical Location & Seq

Genomic Coordinates Reverse (-)

18469200 .. 18470403

Gene Structure 1204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G188500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAATGTGGCAGCTGGAGCACCTGAAACTTCTGCCGAAAGGGACTTGAATGCAGTTGCAGAACCATATGTTGGTATGGAATTTGACTCTGAAGATGCTGCCAAGGATTTTTATAGTGAATATGCAAGGCATGTAGGGTTCATCATGCGTATAGATCAGTGTCGGCGATCAGATGTTGACAAGAGAATTCTTTCCCGTAGGCTCTCCTGCAATAAGCAAGGGCGTTATGTAAAACCTAGAGATCAAGTCCGGCCAGTTCGGAGACCACGACCTAGCACAAGAGAAGGTTGTAAAGCAATGATGCTGGTCAAAGTTAATAAATCTGGAAAATGGGTTGTTACAAGAGTTGTTAAGGACCATACTCATCCGCTTATAGTTTCTTCTGGGATTTCTATGGATGAAAGGGATATGAAGATTGAGCAACTCACTATGGAGCTGGAGCGTGAAGATCAGTTATGTGAACTATATCATGGGCTACTACTTACATTGCTGGATAACGTTGAGGAGCAAACAGAACTGATATCCATGAAAGTTAGCGGAGTCGTTAACGATGTAAGAGAATTTGAGACTGAAGTTGAAAGACTTCCACAAAATGAACTGGACGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

204

Amino Acids

23.39

Weight (kDa)

5.39

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12850 AT4G12850 AT4G12850 AT4G12850
fragaria_vesca	FvH4_2g17602
malus_domestica	MD05G1156300.v1.1 MD05G1156400.v1.1 MD10G1150000.v1.1
prunus_persica	Prupe.8G188400_v2.0.a1 Prupe.8G188500_v2.0.a1
pyrus_communis	pycom05g14890 pycom10g12940
rosa_chinensis	RchiOBHm_Chr6g0282571
rosa_multiflora	Rmu_sc0011073.1_g000003
rosa_roxburghii	Rroxscaffold_7G00186260
rosa_samantha	Rh6AG260900 Rh6BG264000 Rh6CG263100
rosa_wichuraiana	Rw6G022560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	71
AciI	CCGC	2 cut(s)	368, 537
AclI	AACGTT	1 cut(s)	498
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	3 cut(s)	80, 186, 560
AcuI	CTGAAG	2 cut(s)	111, 591
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	49, 578
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	2 cut(s)	14, 436
AluI	AGCT	2 cut(s)	14, 436
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	2 cut(s)	256, 560
AoxI	GGCC	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	11, 98
ApoI	RAATTY	3 cut(s)	80, 186, 560
Asp700I	GAANNNNTTC	2 cut(s)	190, 582
AspS9I	GGNCC	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	23, 85
BcoDI	GTCTC	2 cut(s)	256, 560
BfaI	CTAG	2 cut(s)	237, 273
BisI	GCNGC	2 cut(s)	12, 99
BlsI	GCNGC	2 cut(s)	13, 100
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmsI	GCATC	2 cut(s)	85, 291
BpmI	CTGGAG	2 cut(s)	36, 458
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	254, 603
Bse3DI	GCAATG	2 cut(s)	303, 485
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	364, 403
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	2 cut(s)	303, 485
BseNI	ACTGG	2 cut(s)	254, 603
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	23, 85
BshFI	GGCC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	256, 560
BsmFI	GGGAC	1 cut(s)	56
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	154, 167, 241, 448
BspACI	CCGC	2 cut(s)	368, 537
BspANI	GGCC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	303, 485
BsrI	ACTGG	2 cut(s)	254, 603
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	4 cut(s)	154, 167, 241, 448
BssT1I	CCWWGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	364, 403
BstKTI	GATC	4 cut(s)	157, 170, 244, 451
BstMAI	GTCTC	2 cut(s)	256, 560
BstMBI	GATC	4 cut(s)	154, 167, 241, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	23, 85
BsuRI	GGCC	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	364, 403
BtsIMutI	CAGTG	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	355
CviAII	CATG	4 cut(s)	131, 145, 470, 526
CviJI	RGCY	5 cut(s)	14, 202, 253, 436, 475
CviKI_1	RGCY	5 cut(s)	14, 202, 253, 436, 475
DpnI	GATC	4 cut(s)	156, 169, 243, 450
DpnII	GATC	4 cut(s)	154, 167, 241, 448
EaeI	YGGCCR	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	256
Eco32I	GATATC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	2 cut(s)	111, 591
EcoRI	GAATTC	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	4 cut(s)	134, 148, 473, 529
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	4 cut(s)	130, 144, 469, 525
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	12, 99
FokI	GGATG	2 cut(s)	351, 410
Fsp4HI	GCNGC	2 cut(s)	12, 99
FspBI	CTAG	2 cut(s)	237, 273
GluI	GCNGC	2 cut(s)	12, 99
GsuI	CTGGAG	2 cut(s)	36, 458
HaeIII	GGCC	1 cut(s)	253
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	4 cut(s)	134, 148, 473, 529
HincII	GTYRAC	2 cut(s)	178, 547
HindII	GTYRAC	2 cut(s)	178, 547
HinfI	GANTC	2 cut(s)	86, 540
HpaI	GTTAAC	1 cut(s)	547
HpaII	CCGG	1 cut(s)	250
Hpy166II	GTNNAC	3 cut(s)	178, 461, 547
Hpy188I	TCNGA	3 cut(s)	91, 172, 261
Hpy188III	TCNNGA	1 cut(s)	324
Hpy8I	GTNNAC	3 cut(s)	178, 461, 547
HpyAV	CCTTC	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	4 cut(s)	53, 59, 125, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	4 cut(s)	134, 148, 473, 529
KspAI	GTTAAC	1 cut(s)	547
Kzo9I	GATC	4 cut(s)	154, 167, 241, 448
LmnI	GCTCC	4 cut(s)	17, 433, 439, 505
Lsp1109I	GCAGC	2 cut(s)	23, 85
LweI	GCATC	2 cut(s)	85, 291
MaeI	CTAG	2 cut(s)	237, 273
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	4 cut(s)	156, 169, 243, 450
MboI	GATC	4 cut(s)	154, 167, 241, 448
MboII	GAAGA	4 cut(s)	104, 372, 424, 458
MfeI	CAATTG	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	4 cut(s)	80, 186, 560, 607
MlyI	GAGTC	2 cut(s)	80, 549
MnlI	CCTC	1 cut(s)	496
MroXI	GAANNNNTTC	2 cut(s)	190, 582
MseI	TTAA	3 cut(s)	315, 351, 546
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	607
Mva1269I	GAATGC	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	4 cut(s)	154, 167, 241, 448
NlaIII	CATG	4 cut(s)	134, 148, 473, 529
NspI	RCATGY	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PctI	GAATGC	1 cut(s)	55
PdmI	GAANNNNTTC	2 cut(s)	190, 582
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	13, 100
PleI	GAGTC	2 cut(s)	80, 548
PpsI	GAGTC	2 cut(s)	80, 548
Psp1406I	AACGTT	1 cut(s)	498
PspPI	GGNCC	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	315, 351, 546
SatI	GCNGC	2 cut(s)	12, 99
Sau3AI	GATC	4 cut(s)	154, 167, 241, 448
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	2 cut(s)	80, 549
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	7 cut(s)	16, 25, 238, 274, 289, 438, 501
SfaNI	GCATC	2 cut(s)	85, 291
SinI	GGWCC	1 cut(s)	355
Sse9I	AATT	4 cut(s)	80, 186, 560, 607
SsiI	CCGC	2 cut(s)	368, 537
SspMI	CTAG	2 cut(s)	237, 273
StyI	CCWWGG	1 cut(s)	102
TaiI	ACGT	1 cut(s)	501
TasI	AATT	4 cut(s)	80, 186, 560, 607
Tru1I	TTAA	3 cut(s)	315, 351, 546
Tru9I	TTAA	3 cut(s)	315, 351, 546
TscAI	CASTG	1 cut(s)	164
TseI	GCWGC	2 cut(s)	11, 98
TspDTI	ATGAA	6 cut(s)	17, 130, 414, 425, 542, 609
TspRI	CASTG	1 cut(s)	164
Van91I	CCANNNNNTGG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	3 cut(s)	80, 186, 560
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	2 cut(s)	190, 582
XspI	CTAG	2 cut(s)	237, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.