AT4G13800

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003718
Physical Location & Seq
Reverse (-)
8001795 .. 8004767
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13800.4

Sequence Viewer

Length: 1011 bp
ATGGAGGAGATGTCACCTGATAATATACATGGAGTCATTTTAGCTGTGTCTTCGAGTATATTCATCGGTTCTAGCTTCATCATCAAGAAAAAAGGTCTTAAGAAGGCCGGTGTTAGCGGCGCCAGAGCAGGTGAAGGAGGATATGGATACTTATATGAACCTTGGTGGTGGGCTGGAATGATAACAATGATTGTTGGGGAGATAGCCAATTTTGCAGCATATGCATTTGCACCGGCTATTCTAGTAACACCTTTGGGAGCTTTAAGTATTATTTTCAGCGCAGTGCTAGCACATTTTATTTTGGAAGAGAAGTTGCATATGTTTGGTATACTTGGTTGTGTCCTCTGTGTTGTTGGATCTACAACGATTGTTTTACATGCTCCTCACGAGCAAGGCATTGAATCCGTCAAGCAAGTATGGCACCTTGCTACCGAACCAGGTTTCCTTGCATATTCTGCTGTGGTCTTGGTTGTGGTGCTTGCATTGATCTTTTACTATGAGCCGCGTTATGGGAAGACGCATATGATAGTATATGTTGGGATTTGCTCTCTAATGGGCTCTCTTACAGTTATGAGTGTTAAAGCTGTGGCGATCGCCATAAAGCTGACTTTTTCCGGGATGAACCAATTCAAGTACTTCCACGCATGGATCTTCATCATAGTAGTGACCATATGTTGCATTTTGCAAATCAACTACTTGAACAAGGCTCTGGATAATTTCAACACAGCAGTCATATCTCCAGTGTACTATGTTATGTTTACAACATTCACCATCTTAGCTAGTATGATCATGTTCAAGGATTGGGCTTCTCAAAGTGGATTGCAAATTGCTACCGAGCTATGTGGCTTTGTGACCATTTTGTCAGGAACTTTTCTTCTCCACAAGACAAAAGACATGGGAAACAGTACCAGCTTACGCGGCTCCACATCACACTCGCCTAGAGACACTCCTGTCTTCATAAACTCAGGTTCCAGTCGCAGCTCCAATTCCACTAGACCTGCAATACTATAA

Protein Analysis

336

Amino Acids

36.6

Weight (kDa)

8.65

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mg_trans_NIPA PF05653 7 - 237 2.5e-116 Magnesium transporter NIPA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 119
AasI GACNNNNNNGTC 2 cut(s) 859, 950
Acc36I ACCTGC 2 cut(s) 119, 1006
AccB1I GGYRCC 2 cut(s) 119, 420
AccI GTMKAC 1 cut(s) 328
AccII CGCG 2 cut(s) 505, 918
AciI CCGC 3 cut(s) 117, 503, 918
AclWI GGATC 2 cut(s) 364, 656
AcyI GRCGYC 1 cut(s) 120
AfaI GTAC 3 cut(s) 635, 746, 907
AfiI CCNNNNNNNGG 1 cut(s) 509
AflII CTTAAG 1 cut(s) 98
AgsI TTSAA 5 cut(s) 401, 631, 700, 721, 796
AjnI CCWGG 1 cut(s) 436
AloI GAACNNNNNNTCC 2 cut(s) 426, 458
AluBI AGCT 9 cut(s) 44, 75, 260, 584, 604, 779, 838, 912, 981
AluI AGCT 9 cut(s) 44, 75, 260, 584, 604, 779, 838, 912, 981
Alw26I GTCTC 1 cut(s) 936
AlwI GGATC 2 cut(s) 364, 656
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 215, 978
AsiSI GCGATCGC 1 cut(s) 594
Asp700I GAANNNNTTC 1 cut(s) 626
AspLEI GCGC 2 cut(s) 122, 281
AsuC2I CCSGG 1 cut(s) 616
AsuHPI GGTGA 3 cut(s) 6, 143, 760
AsuNHI GCTAGC 1 cut(s) 286
BanI GGYRCC 2 cut(s) 119, 420
BanII GRGCYC 1 cut(s) 560
BauI CACGAG 1 cut(s) 386
BbsI GAAGAC 3 cut(s) 42, 521, 946
BbvI GCAGC 2 cut(s) 227, 990
BccI CCATC 1 cut(s) 779
BciT130I CCWGG 1 cut(s) 438
BciVI GTATCC 1 cut(s) 140
BclI TGATCA 1 cut(s) 786
BcnI CCSGG 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 936
BfaI CTAG 6 cut(s) 72, 242, 287, 780, 939, 993
BfoI RGCGCY 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 98
BfuAI ACCTGC 2 cut(s) 119, 1006
BfuI GTATCC 1 cut(s) 140
BisI GCNGC 5 cut(s) 118, 216, 503, 919, 979
BlsI GCNGC 5 cut(s) 119, 217, 504, 920, 980
BmcAI AGTACT 1 cut(s) 635
Bme1390I CCNGG 2 cut(s) 438, 616
BmiI GGNNCC 4 cut(s) 121, 422, 922, 970
BmrFI CCNGG 2 cut(s) 438, 616
BmtI GCTAGC 1 cut(s) 290
BpiI GAAGAC 3 cut(s) 42, 521, 946
BpmI CTGGAG 1 cut(s) 723
BpuMI CCSGG 1 cut(s) 616
BsaBI GATNNNNATC 1 cut(s) 653
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 161
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse118I RCCGGY 2 cut(s) 107, 232
Bse1I ACTGG 2 cut(s) 740, 972
Bse8I GATNNNNATC 1 cut(s) 653
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 624
BseJI GATNNNNATC 1 cut(s) 653
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 978
BseNI ACTGG 2 cut(s) 740, 972
BseRI GAGGAG 2 cut(s) 20, 372
BseXI GCAGC 2 cut(s) 227, 990
Bsh1236I CGCG 2 cut(s) 505, 918
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 2 cut(s) 119, 420
BsiEI CGRYCG 1 cut(s) 594
BsiSI CCGG 3 cut(s) 108, 233, 615
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 1 cut(s) 936
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 5 cut(s) 356, 486, 591, 648, 786
BspACI CCGC 3 cut(s) 117, 503, 918
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 977
BspFNI CGCG 2 cut(s) 505, 918
BspLI GGNNCC 4 cut(s) 121, 422, 922, 970
BspMI ACCTGC 2 cut(s) 119, 1006
BspOI GCTAGC 1 cut(s) 290
BspPI GGATC 2 cut(s) 364, 656
BspT107I GGYRCC 2 cut(s) 119, 420
BspTI CTTAAG 1 cut(s) 98
BsrFI RCCGGY 2 cut(s) 107, 232
BsrI ACTGG 2 cut(s) 740, 972
BssAI RCCGGY 2 cut(s) 107, 232
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 5 cut(s) 356, 486, 591, 648, 786
BssNAI GTATAC 1 cut(s) 329
BssNI GRCGYC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 161
Bst1107I GTATAC 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 2 cut(s) 568, 905
Bst6I CTCTTC 1 cut(s) 300
BstACI GRCGYC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 98
BstAPI GCANNNNNTGC 2 cut(s) 221, 455
BstC8I GCNNGC 2 cut(s) 288, 480
BstDEI CTNAG 2 cut(s) 775, 964
BstF5I GGATG 1 cut(s) 624
BstFNI CGCG 2 cut(s) 505, 918
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 2 cut(s) 122, 281
BstKTI GATC 5 cut(s) 359, 489, 594, 651, 789
BstMAI GTCTC 1 cut(s) 936
BstMBI GATC 5 cut(s) 356, 486, 591, 648, 786
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 6 cut(s) 212, 221, 287, 418, 455, 918
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 436, 614
BstUI CGCG 2 cut(s) 505, 918
BstV1I GCAGC 2 cut(s) 227, 990
BstV2I GAAGAC 3 cut(s) 42, 521, 946
BstX2I RGATCY 2 cut(s) 356, 648
BstYI RGATCY 2 cut(s) 356, 648
BstZ17I GTATAC 1 cut(s) 329
BsuI GTATCC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 1 cut(s) 624
BtsI GCAGTG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 288, 747
BveI ACCTGC 2 cut(s) 119, 1006
Cac8I GCNNGC 2 cut(s) 288, 480
CfoI GCGC 2 cut(s) 122, 281
Cfr10I RCCGGY 2 cut(s) 107, 232
CseI GACGC 1 cut(s) 526
CsiI ACCWGGT 1 cut(s) 436
Csp6I GTAC 3 cut(s) 634, 745, 906
CviAII CATG 5 cut(s) 29, 377, 645, 790, 895
CviQI GTAC 3 cut(s) 634, 745, 906
DdeI CTNAG 2 cut(s) 775, 964
DinI GGCGCC 1 cut(s) 121
DpnI GATC 5 cut(s) 358, 488, 593, 650, 788
DpnII GATC 5 cut(s) 356, 486, 591, 648, 786
DrdI GACNNNNNNGTC 2 cut(s) 859, 950
DseDI GACNNNNNNGTC 2 cut(s) 859, 950
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 560
EgeI GGCGCC 1 cut(s) 121
EheI GGCGCC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 5 cut(s) 32, 380, 648, 793, 898
FatI CATG 5 cut(s) 28, 376, 644, 789, 894
FauNDI CATATG 4 cut(s) 220, 318, 522, 671
FbaI TGATCA 1 cut(s) 786
FblI GTMKAC 1 cut(s) 328
Fnu4HI GCNGC 5 cut(s) 118, 216, 503, 919, 979
FokI GGATG 1 cut(s) 631
FriOI GRGCYC 1 cut(s) 560
Fsp4HI GCNGC 5 cut(s) 118, 216, 503, 919, 979
FspBI CTAG 6 cut(s) 72, 242, 287, 780, 939, 993
GlaI GCGC 2 cut(s) 121, 280
GluI GCNGC 5 cut(s) 118, 216, 503, 919, 979
GsuI CTGGAG 1 cut(s) 723
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 1 cut(s) 107
HapII CCGG 3 cut(s) 108, 233, 615
HgaI GACGC 1 cut(s) 526
HhaI GCGC 2 cut(s) 122, 281
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 5 cut(s) 32, 380, 648, 793, 898
Hin6I GCGC 2 cut(s) 120, 279
HinP1I GCGC 2 cut(s) 120, 279
HinfI GANTC 2 cut(s) 33, 401
HpaII CCGG 3 cut(s) 108, 233, 615
HphI GGTGA 3 cut(s) 6, 143, 760
Hpy166II GTNNAC 3 cut(s) 329, 745, 759
Hpy188III TCNNGA 4 cut(s) 85, 386, 710, 864
Hpy8I GTNNAC 3 cut(s) 329, 745, 759
HpyAV CCTTC 2 cut(s) 97, 128
HpyCH4III ACNGT 2 cut(s) 568, 905
HpyF10VI GCNNNNNNNGC 6 cut(s) 212, 221, 287, 418, 455, 918
HpyF3I CTNAG 2 cut(s) 775, 964
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 5 cut(s) 32, 380, 648, 793, 898
HspAI GCGC 2 cut(s) 120, 279
KasI GGCGCC 1 cut(s) 119
Ksp22I TGATCA 1 cut(s) 786
Kzo9I GATC 5 cut(s) 356, 486, 591, 648, 786
LmnI GCTCC 4 cut(s) 257, 385, 926, 986
Lsp1109I GCAGC 2 cut(s) 227, 990
MabI ACCWGGT 1 cut(s) 436
MaeI CTAG 6 cut(s) 72, 242, 287, 780, 939, 993
MaeIII GTNAC 4 cut(s) 12, 244, 664, 850
MalI GATC 5 cut(s) 358, 488, 593, 650, 788
MboI GATC 5 cut(s) 356, 486, 591, 648, 786
MboII GAAGA 6 cut(s) 42, 317, 526, 643, 866, 946
MflI RGATCY 2 cut(s) 356, 648
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 5 cut(s) 208, 626, 715, 825, 985
Mly113I GGCGCC 1 cut(s) 120
MlyI GAGTC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 3 cut(s) 131, 353, 393
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 626
MseI TTAA 3 cut(s) 99, 263, 579
MslI CAYNNNNRTG 1 cut(s) 662
MspCI CTTAAG 1 cut(s) 98
MspI CCGG 3 cut(s) 108, 233, 615
MspR9I CCNGG 2 cut(s) 438, 616
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 2 cut(s) 505, 918
MwoI GCNNNNNNNGC 6 cut(s) 212, 221, 287, 418, 455, 918
NarI GGCGCC 1 cut(s) 120
NciI CCSGG 1 cut(s) 616
NdeI CATATG 4 cut(s) 220, 318, 522, 671
NdeII GATC 5 cut(s) 356, 486, 591, 648, 786
NheI GCTAGC 1 cut(s) 286
NlaIII CATG 5 cut(s) 32, 380, 648, 793, 898
NlaIV GGNNCC 4 cut(s) 121, 422, 922, 970
NmuCI GTSAC 3 cut(s) 12, 664, 850
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 1 cut(s) 380
PaqCI CACCTGC 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 626
PfeI GAWTC 1 cut(s) 401
PfoI TCCNGGA 1 cut(s) 614
PkrI GCNGC 5 cut(s) 119, 217, 504, 920, 980
Ple19I CGATCG 1 cut(s) 594
PleI GAGTC 1 cut(s) 41
PluTI GGCGCC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 4 cut(s) 121, 422, 922, 970
PsuI RGATCY 2 cut(s) 356, 648
PvuI CGATCG 1 cut(s) 594
RgaI GCGATCGC 1 cut(s) 594
RsaI GTAC 3 cut(s) 635, 746, 907
RsaNI GTAC 3 cut(s) 634, 745, 906
RseI CAYNNNNRTG 1 cut(s) 662
SaqAI TTAA 3 cut(s) 99, 263, 579
SatI GCNGC 5 cut(s) 118, 216, 503, 919, 979
Sau3AI GATC 5 cut(s) 356, 486, 591, 648, 786
ScaI AGTACT 1 cut(s) 635
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 2 cut(s) 438, 616
SduI GDGCHC 1 cut(s) 560
SexAI ACCWGGT 1 cut(s) 436
SfaAI GCGATCGC 1 cut(s) 594
SfoI GGCGCC 1 cut(s) 121
SgfI GCGATCGC 1 cut(s) 594
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 5 cut(s) 208, 626, 715, 825, 985
SsiI CCGC 3 cut(s) 117, 503, 918
SspDI GGCGCC 1 cut(s) 119
SspMI CTAG 6 cut(s) 72, 242, 287, 780, 939, 993
StyD4I CCNGG 2 cut(s) 436, 614
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 568, 905
TaqI TCGA 1 cut(s) 53
TasI AATT 5 cut(s) 208, 626, 715, 825, 985
TatI WGTACW 2 cut(s) 633, 744
TauI GCSGC 3 cut(s) 120, 505, 921
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 3 cut(s) 99, 263, 579
Tru9I TTAA 3 cut(s) 99, 263, 579
TscAI CASTG 2 cut(s) 288, 747
TseFI GTSAC 3 cut(s) 12, 664, 850
TseI GCWGC 2 cut(s) 215, 978
Tsp45I GTSAC 3 cut(s) 12, 664, 850
TspDTI ATGAA 6 cut(s) 52, 67, 171, 635, 643, 946
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 2 cut(s) 288, 747
Vha464I CTTAAG 1 cut(s) 98
XceI RCATGY 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 626
XspI CTAG 6 cut(s) 72, 242, 287, 780, 939, 993
ZrmI AGTACT 1 cut(s) 635
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.