Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003718

Physical Location & Seq

Genomic Coordinates Forward (+)

41372492 .. 41376546

Gene Structure 4055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1282200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGATTATCGCCTGACAATATTCATGGACTCACTCTCGCGGTTTCTTCAAGCATTTTTATTGGCACTAGTTTTATCATCAAGAAGAAAGGTCTTAAAAAAGCCGGCACTACTAGAACCAGAGCAGGATTAGGAGGATATACGTACTTGTATGAACCCTTGTGGTGGGCTGGGATGATAGCAATGATTGTTGGGGAGATTGCTAACTTTGCTGCTTATGCGTTTGCTCCAGCAATTCTCGTAACTCCCTTGGGATCTTTAAGTATTATTGTCAGTGCAGTGCTTGCTCATTTTGTTTTGGAGGAAAAATTGCATATCTTTGGTGTGCTTGGTTGCGTTCTTTGCGTGGTGGGTTCTACAAGTATTGTATTGCATGCTCCACAAGAGACACCGATACATTCTGTTAAGCAAGTGTGGCAGCATGCTACGCAGCCAGGTTTCATCATCTACACATGTATAGTATTGATTCTGGTTGCTGTCCTCATTTTCTGGTATGTGCCATGCTACGGGCATACCCACATGATCGTATATGTTGGTATTTGTTCACTCATGGGATCTCTTACGGTTATGAGTGTGAAAGCAGTGGGAATAGCTCTGAAGCTGACATTTTCCGGAACAAATCAATTTAAATACTTCGAGACTTGGTTTTTTGTGTTGGTACTGGCGGTATTCTGTCTTTTTCAGGTCAACTACTTAAACAAGGCTCTTGACACGTTTAACACTGCCGTTATATCTCCAGTCTACTACGTTATGTTTACAACATTCACCATTCTTGCCAGTGTGATCTTGTTTAAGGACGGGGTGTCACAAAATGGATCCCAGATAGTGACTGAACTGTGTGGTTTCATCACTATATTATCCGGTACATTTCTCCTTCACAAAACAAAGGACATGGGAGATGACTCGCCCAAGGAACCCCTCGTCGTGCAAAGTCCGAGCCATGTGGATTCCCCCACGAATTCCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

323

Amino Acids

35.09

Weight (kDa)

8.4

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	6 - 298	4e-135	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23870 AT3G23870 AT3G23870 AT3G23870 AT3G23870 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800
fragaria_vesca	FvH4_4g13390 FvH4_4g13390
malus_domestica	MD04G1016400.v1.1 MD13G1282200.v1.1
prunus_persica	Prupe.1G163100_v2.0.a1 Prupe.1G163100_v2.0.a1 Prupe.1G163100_v2.0.a1
pyrus_communis	pycom04g01240
rosa_chinensis	RchiOBHm_Chr4g0413761
rosa_laevigata	RLG00000008195
rosa_multiflora	Rmu_sc0020809.1_g000002
rosa_roxburghii	Rroxscaffold_5G00357680
rosa_rugosa	Rorug04G0123200
rosa_samantha	Rh4AG182600 Rh4BG181800 Rh4CG194000 Rh4DG178200
rosa_wichuraiana	Rw4G015300 Rw4G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	741
AccII	CGCG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	611
AciI	CCGC	2 cut(s)	41, 665
AclWI	GGATC	4 cut(s)	262, 562, 810, 823
AcsI	RAATTY	1 cut(s)	958
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	3 cut(s)	146, 660, 865
AfiI	CCNNNNNNNGG	2 cut(s)	165, 506
AflIII	ACRYGT	2 cut(s)	452, 711
AgsI	TTSAA	1 cut(s)	51
AhdI	GACNNNNNGTC	1 cut(s)	802
AhlI	ACTAGT	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	2 cut(s)	593, 601
AluI	AGCT	2 cut(s)	593, 601
Alw26I	GTCTC	2 cut(s)	380, 632
AlwI	GGATC	4 cut(s)	262, 562, 810, 823
Aor13HI	TCCGGA	1 cut(s)	611
ApeKI	GCWGC	3 cut(s)	212, 418, 430
ApoI	RAATTY	1 cut(s)	958
AsuHPI	GGTGA	1 cut(s)	757
BamHI	GGATCC	1 cut(s)	815
BbvI	GCAGC	3 cut(s)	199, 430, 442
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	380, 632
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	2 cut(s)	69, 114
BisI	GCNGC	3 cut(s)	213, 419, 431
BlsI	GCNGC	3 cut(s)	214, 420, 432
Bme1390I	CCNGG	1 cut(s)	435
BmeRI	GACNNNNNGTC	1 cut(s)	802
BmiI	GGNNCC	2 cut(s)	817, 915
BmrFI	CCNGG	1 cut(s)	435
BpmI	CTGGAG	2 cut(s)	213, 720
BsaAI	YACGTR	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	249, 909
BsaWI	WCCGGW	2 cut(s)	611, 860
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 506
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	3 cut(s)	666, 737, 777
Bse3DI	GCAATG	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	249, 909
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	165, 506
BseMI	GCAATG	1 cut(s)	189
BseNI	ACTGG	3 cut(s)	666, 737, 777
BseXI	GCAGC	3 cut(s)	199, 430, 442
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	41
BsiSI	CCGG	3 cut(s)	105, 612, 861
BslI	CCNNNNNNNGG	2 cut(s)	165, 506
BsmAI	GTCTC	2 cut(s)	380, 632
Bsp13I	TCCGGA	1 cut(s)	611
Bsp143I	GATC	5 cut(s)	254, 522, 554, 783, 815
BspACI	CCGC	2 cut(s)	41, 665
BspEI	TCCGGA	1 cut(s)	611
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	817, 915
BspPI	GGATC	4 cut(s)	262, 562, 810, 823
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	3 cut(s)	666, 737, 777
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	2 cut(s)	249, 909
BssMI	GATC	5 cut(s)	254, 522, 554, 783, 815
BssT1I	CCWWGG	2 cut(s)	249, 909
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	565, 837
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	4 cut(s)	106, 285, 375, 423
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	41
BstKTI	GATC	5 cut(s)	257, 525, 557, 786, 818
BstMAI	GTCTC	2 cut(s)	380, 632
BstMBI	GATC	5 cut(s)	254, 522, 554, 783, 815
BstMWI	GCNNNNNNNGC	6 cut(s)	209, 218, 284, 342, 415, 427
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	3 cut(s)	377, 425, 456
BstSCI	CCNGG	1 cut(s)	433
BstSNI	TACGTA	1 cut(s)	144
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	199, 430, 442
BstX2I	RGATCY	3 cut(s)	254, 554, 815
BstYI	RGATCY	3 cut(s)	254, 554, 815
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	3 cut(s)	285, 588, 720
BtsIMutI	CAGTG	5 cut(s)	280, 285, 588, 720, 784
Cac8I	GCNNGC	4 cut(s)	106, 285, 375, 423
Cfr10I	RCCGGY	1 cut(s)	104
Csp6I	GTAC	3 cut(s)	145, 659, 864
CviAII	CATG	9 cut(s)	26, 374, 422, 453, 501, 520, 550, 892, 941
CviJI	RGCY	7 cut(s)	104, 170, 433, 593, 601, 704, 939
CviKI_1	RGCY	7 cut(s)	104, 170, 433, 593, 601, 704, 939
CviQI	GTAC	3 cut(s)	145, 659, 864
DpnI	GATC	5 cut(s)	256, 524, 556, 785, 817
DpnII	GATC	5 cut(s)	254, 522, 554, 783, 815
DraI	TTTAAA	1 cut(s)	628
DriI	GACNNNNNGTC	1 cut(s)	802
Eam1105I	GACNNNNNGTC	1 cut(s)	802
Eco105I	TACGTA	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	249, 909
Eco57I	CTGAAG	1 cut(s)	617
EcoRI	GAATTC	1 cut(s)	958
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	249, 909
ErhI	CCWWGG	2 cut(s)	249, 909
FaeI	CATG	9 cut(s)	29, 377, 425, 456, 504, 523, 553, 895, 944
FatI	CATG	9 cut(s)	25, 373, 421, 452, 500, 519, 549, 891, 940
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	3 cut(s)	213, 419, 431
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	3 cut(s)	213, 419, 431
FspBI	CTAG	2 cut(s)	69, 114
GluI	GCNGC	3 cut(s)	213, 419, 431
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	2 cut(s)	213, 720
HapII	CCGG	3 cut(s)	105, 612, 861
Hin1II	CATG	9 cut(s)	29, 377, 425, 456, 504, 523, 553, 895, 944
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	4 cut(s)	30, 466, 902, 947
HpaII	CCGG	3 cut(s)	105, 612, 861
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	4 cut(s)	545, 688, 742, 756
Hpy188I	TCNGA	2 cut(s)	597, 936
Hpy188III	TCNNGA	5 cut(s)	82, 612, 637, 707, 963
Hpy8I	GTNNAC	4 cut(s)	545, 688, 742, 756
Hpy99I	CGWCG	1 cut(s)	926
HpyAV	CCTTC	1 cut(s)	884
HpyCH4III	ACNGT	2 cut(s)	565, 837
HpyCH4IV	ACGT	3 cut(s)	143, 713, 747
HpyCH4V	TGCA	4 cut(s)	278, 313, 373, 928
HpyF10VI	GCNNNNNNNGC	6 cut(s)	209, 218, 284, 342, 415, 427
HpySE526I	ACGT	3 cut(s)	143, 713, 747
Hsp92II	CATG	9 cut(s)	29, 377, 425, 456, 504, 523, 553, 895, 944
Kpn2I	TCCGGA	1 cut(s)	611
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	254, 522, 554, 783, 815
LmnI	GCTCC	2 cut(s)	232, 382
Lsp1109I	GCAGC	3 cut(s)	199, 430, 442
MaeI	CTAG	2 cut(s)	69, 114
MaeII	ACGT	3 cut(s)	143, 713, 747
MaeIII	GTNAC	3 cut(s)	241, 804, 826
MalI	GATC	5 cut(s)	256, 524, 556, 785, 817
MboI	GATC	5 cut(s)	254, 522, 554, 783, 815
MboII	GAAGA	2 cut(s)	39, 97
MflI	RGATCY	3 cut(s)	254, 554, 815
MluCI	AATT	4 cut(s)	234, 308, 623, 958
MlyI	GAGTC	2 cut(s)	24, 896
MnlI	CCTC	4 cut(s)	128, 295, 491, 929
MroI	TCCGGA	1 cut(s)	611
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	7 cut(s)	96, 260, 405, 627, 695, 717, 792
MspI	CCGG	3 cut(s)	105, 612, 861
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	6 cut(s)	209, 218, 284, 342, 415, 427
NaeI	GCCGGC	1 cut(s)	106
NdeII	GATC	5 cut(s)	254, 522, 554, 783, 815
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	9 cut(s)	29, 377, 425, 456, 504, 523, 553, 895, 944
NlaIV	GGNNCC	2 cut(s)	817, 915
NmuCI	GTSAC	2 cut(s)	804, 826
NspI	RCATGY	3 cut(s)	377, 425, 456
PaeI	GCATGC	2 cut(s)	377, 425
PciI	ACATGT	1 cut(s)	452
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	466, 947
PkrI	GCNGC	3 cut(s)	214, 420, 432
PleI	GAGTC	2 cut(s)	24, 896
PpsI	GAGTC	2 cut(s)	24, 896
Ppu21I	YACGTR	1 cut(s)	144
PscI	ACATGT	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	817, 915
PsuI	RGATCY	3 cut(s)	254, 554, 815
RsaI	GTAC	3 cut(s)	146, 660, 865
RsaNI	GTAC	3 cut(s)	145, 659, 864
SaqAI	TTAA	7 cut(s)	96, 260, 405, 627, 695, 717, 792
SatI	GCNGC	3 cut(s)	213, 419, 431
Sau3AI	GATC	5 cut(s)	254, 522, 554, 783, 815
SchI	GAGTC	2 cut(s)	24, 896
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	8 cut(s)	94, 146, 439, 595, 603, 687, 716, 750
SmiI	ATTTAAAT	1 cut(s)	628
SnaBI	TACGTA	1 cut(s)	144
SpeI	ACTAGT	1 cut(s)	68
SphI	GCATGC	2 cut(s)	377, 425
Sse9I	AATT	4 cut(s)	234, 308, 623, 958
SsiI	CCGC	2 cut(s)	41, 665
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	2 cut(s)	69, 114
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	2 cut(s)	249, 909
SwaI	ATTTAAAT	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	565, 837
TaiI	ACGT	3 cut(s)	146, 716, 750
TaqI	TCGA	1 cut(s)	636
TasI	AATT	4 cut(s)	234, 308, 623, 958
TfiI	GAWTC	2 cut(s)	466, 947
Tru1I	TTAA	7 cut(s)	96, 260, 405, 627, 695, 717, 792
Tru9I	TTAA	7 cut(s)	96, 260, 405, 627, 695, 717, 792
TscAI	CASTG	5 cut(s)	280, 285, 588, 727, 784
TseFI	GTSAC	2 cut(s)	804, 826
TseI	GCWGC	3 cut(s)	212, 418, 430
Tsp45I	GTSAC	2 cut(s)	804, 826
TspDTI	ATGAA	4 cut(s)	14, 168, 430, 835
TspRI	CASTG	5 cut(s)	280, 285, 588, 727, 784
XapI	RAATTY	1 cut(s)	958
XceI	RCATGY	3 cut(s)	377, 425, 456
XmiI	GTMKAC	1 cut(s)	741
XspI	CTAG	2 cut(s)	69, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.