FvH4_4g13390

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
17011206 .. 17018071
6866 bp
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UTR
Exon/CDS
Intron
FvH4_4g13390.t2

Sequence Viewer

Length: 981 bp
ATGGGATTATCAAGCGACAATGTTCATGGACTCATTCTAGCCGTTTCTTCAAGTATTTTTATCGGGAGTAGCTTCATAATCAAGAAGAAAGGCCTTAAGAAAGCAGGCACAACAGGAGTTAGAGCAGGATCCGGAGGGCATACATACTTGTATGAACCCTTATGGTGGGCTGGGATGATATCAATGATTTTAGGGGAGATAGCTAATTTTGCTGCTTATGCATTTGCTCCAGCAATTCTTGTAACTCCTTTGGGAGCATTAAGTATTATTGTCAGTGCAGTGCTTGCTCATTTTGTTTTGGAGGAAAAATTACATATATTTGGAGTACTTGGTTGTGTTCTTTGCATGGTGGGTTCTACTGGTATTGTTTTGAATGCTCCACAAGAGAGCCCAATACATTCTGTTAAAGAAGTATGGCATCATGCTACGCAGCCAGGTTTCATTGTCTACACAGTTTTTATACTGTTTCTCATTGGCATCCTTATTTTCTATTTTGTTCCACGTTTTGGGAAGACTCACCTAATCGTATACGTTGGAATCTGTTCTCTCATGGGGTCTCTTACGGTTATGAGTGTAAAAGCAGTGGGTATTGCTCTGAAGCTGACTTTTTCAGGATCAAACCAATTTAAAGCGTATGAGACTTGGGTTTTTGCCGTGATATTGACGGTCTGTTGTCTTTTTCAGATTAATTATTTAAACAAGGCACTGGATACCTTTAACACTGCTGTAGTTTCTCCAGTTTATTATGTGATGTTTACAATATTCACCATTCTTGCCAGCGTGATCATGTATAAGGACTATGAGTCACAAAATGCGTCACAGATTGTGACTGAATTATGTGGTTTTGTTACTATCCTAGCTGGTACCTTTCTACTTCACAAAACCAGGGATATGGGAAATGATCCACCCAAAGAACCTATCTTCCAAAGCCCTCAAGTGTCTGAAGCACCTTCATCTCCACTTCCTATCAGTCGAAGATAG

Protein Analysis

327

Amino Acids

35.45

Weight (kDa)

8.66

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mg_trans_NIPA PF05653 6 - 145 1.2e-65 Magnesium transporter NIPA
Mg_trans_NIPA PF05653 146 - 239 4.5e-37 Magnesium transporter NIPA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 863
AccB1I GGYRCC 1 cut(s) 863
AccB7I CCANNNNNTGG 1 cut(s) 506
AccI GTMKAC 2 cut(s) 447, 528
AccIII TCCGGA 1 cut(s) 131
AclWI GGATC 4 cut(s) 123, 136, 622, 896
AcuI CTGAAG 2 cut(s) 617, 963
AfaI GTAC 2 cut(s) 327, 865
AfiI CCNNNNNNNGG 2 cut(s) 165, 506
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 51, 373
AhdI GACNNNNNGTC 1 cut(s) 802
AjnI CCWGG 2 cut(s) 433, 884
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
AluBI AGCT 4 cut(s) 72, 203, 601, 860
AluI AGCT 4 cut(s) 72, 203, 601, 860
Alw26I GTCTC 2 cut(s) 561, 632
AlwI GGATC 4 cut(s) 123, 136, 622, 896
Aor13HI TCCGGA 1 cut(s) 131
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 212, 430
AseI ATTAAT 1 cut(s) 687
Asp700I GAANNNNTTC 1 cut(s) 541
Asp718I GGTACC 1 cut(s) 863
AsuHPI GGTGA 2 cut(s) 509, 757
BamHI GGATCC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 863
BanII GRGCYC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 518
BbvI GCAGC 2 cut(s) 199, 442
BceAI ACGGC 2 cut(s) 26, 638
BciT130I CCWGG 2 cut(s) 435, 886
BciVI GTATCC 1 cut(s) 703
BclI TGATCA 1 cut(s) 783
BcoDI GTCTC 2 cut(s) 561, 632
BfaI CTAG 2 cut(s) 38, 857
BfmI CTRYAG 1 cut(s) 726
BfrI CTTAAG 1 cut(s) 95
BfuI GTATCC 1 cut(s) 703
BisI GCNGC 2 cut(s) 213, 431
BlsI GCNGC 2 cut(s) 214, 432
BmcAI AGTACT 1 cut(s) 327
Bme1390I CCNGG 2 cut(s) 435, 886
BmeRI GACNNNNNGTC 1 cut(s) 802
BmiI GGNNCC 2 cut(s) 130, 865
BmrFI CCNGG 2 cut(s) 435, 886
BmsI GCATC 2 cut(s) 427, 486
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 2 cut(s) 213, 720
BpuEI CTTGAG 1 cut(s) 918
BsaI GGTCTC 1 cut(s) 561
BsaJI CCNNGG 1 cut(s) 885
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 506
Bse1I ACTGG 3 cut(s) 364, 711, 737
BseAI TCCGGA 1 cut(s) 131
BseBI CCWGG 2 cut(s) 435, 886
BseDI CCNNGG 1 cut(s) 885
BseGI GGATG 2 cut(s) 180, 477
BseLI CCNNNNNNNGG 2 cut(s) 165, 506
BseNI ACTGG 3 cut(s) 364, 711, 737
BseXI GCAGC 2 cut(s) 199, 442
BseYI CCCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 863
BsiSI CCGG 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 165, 506
BsmAI GTCTC 2 cut(s) 561, 632
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 561
Bsp1286I GDGCHC 1 cut(s) 392
Bsp13I TCCGGA 1 cut(s) 131
Bsp143I GATC 4 cut(s) 128, 614, 783, 901
BspANI GGCC 1 cut(s) 93
BspEI TCCGGA 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 130, 865
BspPI GGATC 4 cut(s) 123, 136, 622, 896
BspT107I GGYRCC 1 cut(s) 863
BspTI CTTAAG 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 561
BsrI ACTGG 3 cut(s) 364, 711, 737
BssECI CCNNGG 1 cut(s) 885
BssMI GATC 4 cut(s) 128, 614, 783, 901
BssNAI GTATAC 1 cut(s) 529
Bst1107I GTATAC 1 cut(s) 529
Bst2UI CCWGG 2 cut(s) 435, 886
Bst4CI ACNGT 4 cut(s) 454, 465, 565, 667
BstAFI CTTAAG 1 cut(s) 95
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 3 cut(s) 106, 285, 778
BstF5I GGATG 2 cut(s) 180, 477
BstKTI GATC 4 cut(s) 131, 617, 786, 904
BstMAI GTCTC 2 cut(s) 561, 632
BstMBI GATC 4 cut(s) 128, 614, 783, 901
BstMWI GCNNNNNNNGC 3 cut(s) 209, 218, 284
BstNI CCWGG 2 cut(s) 435, 886
BstSCI CCNGG 2 cut(s) 433, 884
BstSFI CTRYAG 1 cut(s) 726
BstV1I GCAGC 2 cut(s) 199, 442
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 892
BstYI RGATCY 1 cut(s) 128
BstZ17I GTATAC 1 cut(s) 529
BsuI GTATCC 1 cut(s) 703
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 2 cut(s) 180, 477
BtsI GCAGTG 3 cut(s) 285, 588, 720
BtsIMutI CAGTG 5 cut(s) 280, 285, 588, 704, 720
Cac8I GCNNGC 3 cut(s) 106, 285, 778
CseI GACGC 1 cut(s) 804
Csp6I GTAC 2 cut(s) 326, 864
CviAII CATG 5 cut(s) 26, 346, 422, 550, 787
CviQI GTAC 2 cut(s) 326, 864
DpnI GATC 4 cut(s) 130, 616, 785, 903
DpnII GATC 4 cut(s) 128, 614, 783, 901
DraI TTTAAA 2 cut(s) 628, 696
DriI GACNNNNNGTC 1 cut(s) 802
Eam1105I GACNNNNNGTC 1 cut(s) 802
Eco147I AGGCCT 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 561
Eco32I GATATC 1 cut(s) 180
Eco57I CTGAAG 2 cut(s) 617, 963
EcoRII CCWGG 2 cut(s) 433, 884
EcoRV GATATC 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 392
FaeI CATG 5 cut(s) 29, 349, 425, 553, 790
FatI CATG 5 cut(s) 25, 345, 421, 549, 786
FbaI TGATCA 1 cut(s) 783
FblI GTMKAC 2 cut(s) 447, 528
Fnu4HI GCNGC 2 cut(s) 213, 431
FokI GGATG 2 cut(s) 187, 464
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 213, 431
FspBI CTAG 2 cut(s) 38, 857
GluI GCNGC 2 cut(s) 213, 431
GsaI CCCAGC 1 cut(s) 174
GsuI CTGGAG 2 cut(s) 213, 720
HaeIII GGCC 1 cut(s) 93
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 804
Hin1II CATG 5 cut(s) 29, 349, 425, 553, 790
HinfI GANTC 4 cut(s) 30, 514, 537, 803
HpaII CCGG 1 cut(s) 132
HphI GGTGA 2 cut(s) 509, 757
Hpy166II GTNNAC 3 cut(s) 448, 529, 756
Hpy188I TCNGA 3 cut(s) 597, 684, 943
Hpy188III TCNNGA 4 cut(s) 64, 82, 132, 612
Hpy8I GTNNAC 3 cut(s) 448, 529, 756
HpyAV CCTTC 1 cut(s) 960
HpyCH4III ACNGT 4 cut(s) 454, 465, 565, 667
HpyCH4IV ACGT 2 cut(s) 502, 531
HpyCH4V TGCA 3 cut(s) 221, 278, 345
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 218, 284
HpySE526I ACGT 2 cut(s) 502, 531
Hsp92II CATG 5 cut(s) 29, 349, 425, 553, 790
Kpn2I TCCGGA 1 cut(s) 131
KpnI GGTACC 1 cut(s) 867
Ksp22I TGATCA 1 cut(s) 783
Kzo9I GATC 4 cut(s) 128, 614, 783, 901
LmnI GCTCC 3 cut(s) 232, 254, 382
Lsp1109I GCAGC 2 cut(s) 199, 442
LweI GCATC 2 cut(s) 427, 486
MaeI CTAG 2 cut(s) 38, 857
MaeII ACGT 2 cut(s) 502, 531
MaeIII GTNAC 5 cut(s) 241, 804, 816, 826, 847
MalI GATC 4 cut(s) 130, 616, 785, 903
MboI GATC 4 cut(s) 128, 614, 783, 901
MboII GAAGA 4 cut(s) 39, 97, 523, 913
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 6 cut(s) 205, 234, 308, 623, 688, 833
MlyI GAGTC 3 cut(s) 24, 508, 812
MmeI TCCRAC 1 cut(s) 514
MnlI CCTC 3 cut(s) 128, 295, 942
Mph1103I ATGCAT 1 cut(s) 223
MroI TCCGGA 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 541
MseI TTAA 7 cut(s) 96, 260, 405, 627, 687, 695, 717
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 2 cut(s) 435, 886
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 2 cut(s) 435, 886
MwoI GCNNNNNNNGC 3 cut(s) 209, 218, 284
NdeII GATC 4 cut(s) 128, 614, 783, 901
NlaIII CATG 5 cut(s) 29, 349, 425, 553, 790
NlaIV GGNNCC 2 cut(s) 130, 865
NmuCI GTSAC 3 cut(s) 804, 816, 826
NsiI ATGCAT 1 cut(s) 223
PceI AGGCCT 1 cut(s) 93
PctI GAATGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 1 cut(s) 537
PflMI CCANNNNNTGG 1 cut(s) 506
PkrI GCNGC 2 cut(s) 214, 432
PleI GAGTC 3 cut(s) 24, 508, 811
PpsI GAGTC 3 cut(s) 24, 508, 811
PshBI ATTAAT 1 cut(s) 687
Psp6I CCWGG 2 cut(s) 433, 884
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 2 cut(s) 433, 884
PspN4I GGNNCC 2 cut(s) 130, 865
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 2 cut(s) 327, 865
RsaNI GTAC 2 cut(s) 326, 864
SaqAI TTAA 7 cut(s) 96, 260, 405, 627, 687, 695, 717
SatI GCNGC 2 cut(s) 213, 431
Sau3AI GATC 4 cut(s) 128, 614, 783, 901
ScaI AGTACT 1 cut(s) 327
SchI GAGTC 3 cut(s) 24, 508, 812
ScrFI CCNGG 2 cut(s) 435, 886
SduI GDGCHC 1 cut(s) 392
SfaNI GCATC 2 cut(s) 427, 486
SfcI CTRYAG 1 cut(s) 726
SmlI CTYRAG 2 cut(s) 95, 933
SmoI CTYRAG 2 cut(s) 95, 933
Sse9I AATT 6 cut(s) 205, 234, 308, 623, 688, 833
SseBI AGGCCT 1 cut(s) 93
SspI AATATT 1 cut(s) 762
SspMI CTAG 2 cut(s) 38, 857
StuI AGGCCT 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 433, 884
TaaI ACNGT 4 cut(s) 454, 465, 565, 667
TaiI ACGT 2 cut(s) 505, 534
TaqI TCGA 1 cut(s) 973
TasI AATT 6 cut(s) 205, 234, 308, 623, 688, 833
TatI WGTACW 1 cut(s) 325
TfiI GAWTC 1 cut(s) 537
Tru1I TTAA 7 cut(s) 96, 260, 405, 627, 687, 695, 717
Tru9I TTAA 7 cut(s) 96, 260, 405, 627, 687, 695, 717
TscAI CASTG 5 cut(s) 280, 285, 588, 711, 727
TseFI GTSAC 3 cut(s) 804, 816, 826
TseI GCWGC 2 cut(s) 212, 430
Tsp45I GTSAC 3 cut(s) 804, 816, 826
TspDTI ATGAA 5 cut(s) 14, 64, 168, 430, 942
TspRI CASTG 5 cut(s) 280, 285, 588, 711, 727
Van91I CCANNNNNTGG 1 cut(s) 506
Vha464I CTTAAG 1 cut(s) 95
VspI ATTAAT 1 cut(s) 687
XmiI GTMKAC 2 cut(s) 447, 528
XmnI GAANNNNTTC 1 cut(s) 541
XspI CTAG 2 cut(s) 38, 857
ZrmI AGTACT 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.