Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003718

Physical Location & Seq

Genomic Coordinates Forward (+)

45440366 .. 45443349

Gene Structure 2984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG182600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGATTGTCGCCTGACAATGTTCATGGACTCACTCTAGCGGTTTCTTCAAGCGTTTTTATTGGGACTAGCTTTATAATCAAGAAGAAAGGCCTCAAAAAAGCAGGCACTACAGGAGTTAGAGCAGGGTCTGGAGGGCATACATACTTGTATGAACCCTTATGGTGGGCTGGGATGATATCAATGATTGTGGGGGAGATAGCTAATTTTGCTGCTTATGCATTTGCTCCAGCAATTCTTGTAACTCCCTTGGGAGCATTAAGTATTATCGTCAGTGCAGTGCTTGCTCATTTTGTTTTGGAGGAAAAACTGCATATATTTGGAGTGCTTGGTTGTGTTCTTTGCATGGTGGGCTCTACAACTATTGTTTTGAATGCTCCACAAGAGAGACAAATAAATTCTGTTAAGCAAGTGTGGCATCATGCTACACAGCCAGGTTTTATTGTCTACACAGTTTTCGTACTGATTCTCGTTGCCGTCCTCATTTTCCAATTTGTTCCACGTTATGGGAAGACCCACCTGATCGTATATGTTGGAATTTGTTCTCTTATGGGCTCTCTCACTGTTATGAGTGTGAAAGCAGTGGGTATCGCTCTGAAGCTGTCCTTTTCAGGAACAAACCAATTTAAATACTATGAGACATGGGTTTTTGCAGTGATAGTGGCAGTCTGTTGTATTTTTCAGATTAACTATTTAAACAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

234

Amino Acids

25.32

Weight (kDa)

9.32

Isoelectric Point (pI)

16.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	6 - 234	6.8e-106	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23870 AT3G23870 AT3G23870 AT3G23870 AT3G23870 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800
fragaria_vesca	FvH4_4g13390 FvH4_4g13390
malus_domestica	MD04G1016400.v1.1 MD13G1282200.v1.1
prunus_persica	Prupe.1G163100_v2.0.a1 Prupe.1G163100_v2.0.a1 Prupe.1G163100_v2.0.a1
pyrus_communis	pycom04g01240
rosa_chinensis	RchiOBHm_Chr4g0413761
rosa_laevigata	RLG00000008195
rosa_multiflora	Rmu_sc0020809.1_g000002
rosa_roxburghii	Rroxscaffold_5G00357680
rosa_rugosa	Rorug04G0123200
rosa_samantha	Rh4AG182600 Rh4BG181800 Rh4CG194000 Rh4DG178200
rosa_wichuraiana	Rw4G015300 Rw4G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	1 cut(s)	41
AcsI	RAATTY	2 cut(s)	397, 537
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	2 cut(s)	165, 506
AgsI	TTSAA	2 cut(s)	51, 373
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	3 cut(s)	72, 203, 601
AluI	AGCT	3 cut(s)	72, 203, 601
Alw26I	GTCTC	2 cut(s)	382, 632
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	2 cut(s)	397, 537
Asp700I	GAANNNNTTC	1 cut(s)	541
BanII	GRGCYC	2 cut(s)	356, 557
BbsI	GAAGAC	1 cut(s)	518
BbvI	GCAGC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	382, 632
BfaI	CTAG	2 cut(s)	38, 69
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	2 cut(s)	153, 213
BsaJI	CCNNGG	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 506
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	165, 506
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	165, 506
BsmAI	GTCTC	2 cut(s)	382, 632
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	356, 557
Bsp143I	GATC	1 cut(s)	522
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	454, 565
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	106, 285
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	525
BstMAI	GTCTC	2 cut(s)	382, 632
BstMBI	GATC	1 cut(s)	522
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 218, 284, 351, 415
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	518
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	3 cut(s)	285, 588, 660
BtsIMutI	CAGTG	5 cut(s)	280, 285, 561, 588, 660
Cac8I	GCNNGC	2 cut(s)	106, 285
CaiI	CAGNNNCTG	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	461
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviAII	CATG	4 cut(s)	26, 346, 422, 642
CviJI	RGCY	8 cut(s)	72, 93, 170, 203, 354, 433, 555, 601
CviKI_1	RGCY	8 cut(s)	72, 93, 170, 203, 354, 433, 555, 601
CviQI	GTAC	1 cut(s)	461
DpnI	GATC	1 cut(s)	524
DpnII	GATC	1 cut(s)	522
DraI	TTTAAA	2 cut(s)	628, 696
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	93
Eco24I	GRGCYC	2 cut(s)	356, 557
Eco32I	GATATC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	433
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	223
EcoT38I	GRGCYC	2 cut(s)	356, 557
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	4 cut(s)	29, 349, 425, 645
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	4 cut(s)	25, 345, 421, 641
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	2 cut(s)	356, 557
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	38, 69
GluI	GCNGC	1 cut(s)	213
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	2 cut(s)	153, 213
HaeIII	GGCC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	29, 349, 425, 645
HinfI	GANTC	2 cut(s)	30, 466
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	2 cut(s)	597, 684
Hpy188III	TCNNGA	3 cut(s)	82, 132, 612
Hpy8I	GTNNAC	1 cut(s)	448
HpyCH4III	ACNGT	2 cut(s)	454, 565
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	5 cut(s)	221, 278, 313, 345, 653
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 218, 284, 351, 415
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	4 cut(s)	29, 349, 425, 645
Kzo9I	GATC	1 cut(s)	522
LmnI	GCTCC	3 cut(s)	232, 254, 382
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	38, 69
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	524
MboI	GATC	1 cut(s)	522
MboII	GAAGA	3 cut(s)	39, 97, 523
MhlI	GDGCHC	2 cut(s)	356, 557
MluCI	AATT	6 cut(s)	205, 234, 397, 491, 537, 623
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	4 cut(s)	104, 128, 295, 491
Mph1103I	ATGCAT	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	541
MseI	TTAA	5 cut(s)	260, 405, 627, 687, 695
MslI	CAYNNNNRTG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	5 cut(s)	209, 218, 284, 351, 415
NdeII	GATC	1 cut(s)	522
NlaIII	CATG	4 cut(s)	29, 349, 425, 645
NsiI	ATGCAT	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	93
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	541
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PsiI	TTATAA	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	1 cut(s)	566
SaqAI	TTAA	5 cut(s)	260, 405, 627, 687, 695
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	522
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	2 cut(s)	356, 557
SetI	ASST	6 cut(s)	74, 205, 439, 505, 522, 603
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	111
SmiI	ATTTAAAT	1 cut(s)	628
SmiMI	CAYNNNNRTG	1 cut(s)	566
Sse9I	AATT	6 cut(s)	205, 234, 397, 491, 537, 623
SseBI	AGGCCT	1 cut(s)	93
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	2 cut(s)	38, 69
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	249
SwaI	ATTTAAAT	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	454, 565
TaiI	ACGT	1 cut(s)	505
TasI	AATT	6 cut(s)	205, 234, 397, 491, 537, 623
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	5 cut(s)	260, 405, 627, 687, 695
Tru9I	TTAA	5 cut(s)	260, 405, 627, 687, 695
TscAI	CASTG	5 cut(s)	280, 285, 568, 588, 660
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	14, 168
TspRI	CASTG	5 cut(s)	280, 285, 568, 588, 660
Van91I	CCANNNNNTGG	1 cut(s)	506
XapI	RAATTY	2 cut(s)	397, 537
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	541
XspI	CTAG	2 cut(s)	38, 69
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.