Rroxscaffold_5G00357680

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
37439650 .. 37445010
5361 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00357680.1

Sequence Viewer

Length: 795 bp
ATGGGATTGTCGCCTGACAATGTTCATGGACTCACCCTAGCGGTTTCTTCAAGCGTTTTTATTGGGACTAGCTTTATAATCAAGAAGAAAGGCCTCAAAAAAGCAGGCACTACAGGAGTTAGAGCAGGGTCTGGAGGGCATACATACTTGTATGAACCCTTATGGTGGGCTGGGATGATATCAATGCTTGCTCATTTTGTTTTGGAGGAAAAACTGCATATATTTGGAGTGCTTGGTTGTGTTCTTTGCATGGTGGGCTCTACAACTATTGTTTTGAATGCTCCACAAGAGAGACAAATAAATTCTGTTAAGCAAGTGTGGCATCATGCTACACAGCCAGGTTTTATTGTCTACACAGTTTTCGTACTGATTCTCGTTGCCGTTCTCATTTTCAAATTTGTTCCACGTTATGGGAAGACCCACCTGATTGTATATGTTGGAATTTGTTCTCTTATGGGCTCTCTCACGGTTATGAGTGTGAAAGCAGTGGGTATTGCTCTGAAGCTGTCCTTTTCAGGAACAAACCAATTTAAATACTATGAGACATGGGTTTTTGCAGTGATAGTGGCAGTCTGTTGTATTTTTCAGATTAACTATTTAAACAAGGACTGGGAGTCGCAAAGTGCGTCTCAGATTGTGACTGAATTGTGTGGTTTTGTTACTATCCTATCTGGTACCTTTTTACTTCACAAAACCAGAGATATGGGAAATGATCCACCTAAGGAACCTCCTGTCTTCCAAAGTCCTCGTGCGTCAGAAGCACCTTCATCTCCACTTCCTATTAGCCAGAGATAG

Protein Analysis

264

Amino Acids

28.93

Weight (kDa)

9.22

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mg_trans_NIPA PF05653 6 - 63 2.5e-21 Magnesium transporter NIPA
Mg_trans_NIPA PF05653 62 - 202 7.4e-55 Magnesium transporter NIPA
Mg_trans_NIPA PF05653 202 - 235 5.5e-07 Magnesium transporter NIPA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
Acc65I GGTACC 1 cut(s) 674
AccB1I GGYRCC 1 cut(s) 674
AccB7I CCANNNNNTGG 1 cut(s) 410
AccI GTMKAC 1 cut(s) 351
AciI CCGC 1 cut(s) 41
AclWI GGATC 1 cut(s) 707
AcsI RAATTY 3 cut(s) 301, 395, 441
AcuI CTGAAG 1 cut(s) 521
AfaI GTAC 2 cut(s) 366, 676
AfiI CCNNNNNNNGG 2 cut(s) 165, 410
AgsI TTSAA 3 cut(s) 51, 277, 394
AhdI GACNNNNNGTC 1 cut(s) 613
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 2 cut(s) 72, 505
AluI AGCT 2 cut(s) 72, 505
Alw26I GTCTC 3 cut(s) 286, 536, 633
AlwI GGATC 1 cut(s) 707
AlwNI CAGNNNCTG 1 cut(s) 131
AoxI GGCC 1 cut(s) 91
ApoI RAATTY 3 cut(s) 301, 395, 441
Asp700I GAANNNNTTC 1 cut(s) 445
Asp718I GGTACC 1 cut(s) 674
AsuHPI GGTGA 1 cut(s) 25
AxyI CCTNAGG 1 cut(s) 720
BanI GGYRCC 1 cut(s) 674
BanII GRGCYC 2 cut(s) 260, 461
BauI CACGAG 1 cut(s) 747
BbsI GAAGAC 2 cut(s) 422, 727
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 339
BcoDI GTCTC 3 cut(s) 286, 536, 633
BfaI CTAG 2 cut(s) 38, 69
BfmI CTRYAG 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 339
BmeRI GACNNNNNGTC 1 cut(s) 613
BmiI GGNNCC 2 cut(s) 676, 726
BmrFI CCNGG 1 cut(s) 339
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 619
BpiI GAAGAC 2 cut(s) 422, 727
BpmI CTGGAG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 410
Bse1I ACTGG 1 cut(s) 614
Bse21I CCTNAGG 1 cut(s) 720
BseBI CCWGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 165, 410
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 1 cut(s) 614
BseYI CCCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 674
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 165, 410
BsmAI GTCTC 3 cut(s) 286, 536, 633
BsmBI CGTCTC 1 cut(s) 633
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 1 cut(s) 93
Bsp1286I GDGCHC 2 cut(s) 260, 461
Bsp143I GATC 1 cut(s) 712
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 643
BspLI GGNNCC 2 cut(s) 676, 726
BspPI GGATC 1 cut(s) 707
BspT107I GGYRCC 1 cut(s) 674
BsrI ACTGG 1 cut(s) 614
BssMI GATC 1 cut(s) 712
BssSI CACGAG 1 cut(s) 747
Bst2BI CACGAG 1 cut(s) 747
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 2 cut(s) 358, 469
BstC8I GCNNGC 2 cut(s) 106, 189
BstDEI CTNAG 2 cut(s) 630, 720
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 1 cut(s) 715
BstMAI GTCTC 3 cut(s) 286, 536, 633
BstMBI GATC 1 cut(s) 712
BstMWI GCNNNNNNNGC 3 cut(s) 255, 319, 758
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 111
BstV2I GAAGAC 2 cut(s) 422, 727
BstXI CCANNNNNNTGG 1 cut(s) 703
Bsu36I CCTNAGG 1 cut(s) 720
BsuRI GGCC 1 cut(s) 93
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 2 cut(s) 492, 564
BtsIMutI CAGTG 2 cut(s) 492, 564
Cac8I GCNNGC 2 cut(s) 106, 189
CaiI CAGNNNCTG 1 cut(s) 131
CseI GACGC 2 cut(s) 615, 741
Csp6I GTAC 2 cut(s) 365, 675
CviAII CATG 4 cut(s) 26, 250, 326, 546
CviJI RGCY 8 cut(s) 72, 93, 170, 258, 337, 459, 505, 786
CviKI_1 RGCY 8 cut(s) 72, 93, 170, 258, 337, 459, 505, 786
CviQI GTAC 2 cut(s) 365, 675
DdeI CTNAG 2 cut(s) 630, 720
DpnI GATC 1 cut(s) 714
DpnII GATC 1 cut(s) 712
DraI TTTAAA 2 cut(s) 532, 600
DriI GACNNNNNGTC 1 cut(s) 613
Eam1105I GACNNNNNGTC 1 cut(s) 613
Eco147I AGGCCT 1 cut(s) 93
Eco24I GRGCYC 2 cut(s) 260, 461
Eco32I GATATC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 521
Eco81I CCTNAGG 1 cut(s) 720
EcoRII CCWGG 1 cut(s) 337
EcoRV GATATC 1 cut(s) 180
EcoT38I GRGCYC 2 cut(s) 260, 461
Esp3I CGTCTC 1 cut(s) 633
FaeI CATG 4 cut(s) 29, 253, 329, 549
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 1 cut(s) 79
FatI CATG 4 cut(s) 25, 249, 325, 545
FblI GTMKAC 1 cut(s) 351
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 2 cut(s) 260, 461
FspBI CTAG 2 cut(s) 38, 69
GsaI CCCAGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 93
HgaI GACGC 2 cut(s) 615, 741
Hin1II CATG 4 cut(s) 29, 253, 329, 549
HinfI GANTC 3 cut(s) 30, 370, 614
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 4 cut(s) 501, 588, 633, 757
Hpy188III TCNNGA 3 cut(s) 82, 132, 516
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 1 cut(s) 774
HpyCH4III ACNGT 2 cut(s) 358, 469
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 3 cut(s) 217, 249, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 255, 319, 758
HpyF3I CTNAG 2 cut(s) 630, 720
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 4 cut(s) 29, 253, 329, 549
KpnI GGTACC 1 cut(s) 678
Kzo9I GATC 1 cut(s) 712
LmnI GCTCC 1 cut(s) 286
LweI GCATC 1 cut(s) 331
MaeI CTAG 2 cut(s) 38, 69
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 2 cut(s) 637, 658
MalI GATC 1 cut(s) 714
MboI GATC 1 cut(s) 712
MboII GAAGA 4 cut(s) 39, 97, 427, 727
MhlI GDGCHC 2 cut(s) 260, 461
MluCI AATT 5 cut(s) 301, 395, 441, 527, 644
MlyI GAGTC 2 cut(s) 24, 623
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 5 cut(s) 104, 128, 199, 738, 756
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 4 cut(s) 309, 531, 591, 599
MslI CAYNNNNRTG 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 3 cut(s) 255, 319, 758
NdeII GATC 1 cut(s) 712
NlaIII CATG 4 cut(s) 29, 253, 329, 549
NlaIV GGNNCC 2 cut(s) 676, 726
NmuCI GTSAC 1 cut(s) 637
PceI AGGCCT 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 623
PctI GAATGC 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 1 cut(s) 370
PflMI CCANNNNNTGG 1 cut(s) 410
PleI GAGTC 2 cut(s) 24, 622
PpsI GAGTC 2 cut(s) 24, 622
PsiI TTATAA 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 676, 726
PstNI CAGNNNCTG 1 cut(s) 131
RsaI GTAC 2 cut(s) 366, 676
RsaNI GTAC 2 cut(s) 365, 675
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 4 cut(s) 309, 531, 591, 599
Sau3AI GATC 1 cut(s) 712
SchI GAGTC 2 cut(s) 24, 623
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 2 cut(s) 260, 461
SetI ASST 9 cut(s) 74, 343, 409, 426, 507, 680, 721, 730, 766
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 111
SmiI ATTTAAAT 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 470
Sse9I AATT 5 cut(s) 301, 395, 441, 527, 644
SseBI AGGCCT 1 cut(s) 93
SsiI CCGC 1 cut(s) 41
SspMI CTAG 2 cut(s) 38, 69
StuI AGGCCT 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 337
SwaI ATTTAAAT 1 cut(s) 532
TaaI ACNGT 2 cut(s) 358, 469
TaiI ACGT 1 cut(s) 409
TasI AATT 5 cut(s) 301, 395, 441, 527, 644
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 4 cut(s) 309, 531, 591, 599
Tru9I TTAA 4 cut(s) 309, 531, 591, 599
TscAI CASTG 2 cut(s) 492, 564
TseFI GTSAC 1 cut(s) 637
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 3 cut(s) 14, 168, 756
TspRI CASTG 2 cut(s) 492, 564
Van91I CCANNNNNTGG 1 cut(s) 410
XapI RAATTY 3 cut(s) 301, 395, 441
XmiI GTMKAC 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 2 cut(s) 38, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.