Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003718

Physical Location & Seq

Genomic Coordinates Reverse (-)

1110314 .. 1113681

Gene Structure 3368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGGATATCGCGTGACAATGTTCATGGACTCACTCTCGCGGTTTCTTCAAGCATTTTCATTGGCGCTAGTTTTATCATCAAGAAGAAAGGTCTTAAAAAGGCCGGCGCTACTGGAACCAGAGCAGGATTAGGAGGGTATACGTACTTGTATGAACCCTTGTGGTGGGCTGGGATGACAGCAATGATTGTTGGGGAGATAGCCAACTTTGCAGCTTATGCATTTGCTCCAGCAATTCTCGTAACTCCGTTGGGAGCTTTAAGTATTATTGTCAGTGCAGTGCTTGCTCATTTTGTTCTGAAGGAAAAATTGCATATTTTTGGTGTGCTTGGTTGTGTTCTTTGCGTGGTGGGTTCTGTAAGCATTGTATTGCATGCTCCACAAGAGAAACCAATATATTCCGTTAAGCAAGTGTGGCATCATGCTACGCAGCCAGGTTTCATCATCTACACATGTATAGTCTTGATTCTGGTTGCTGTCCTCATTGTCCGGTATGTGCCACGCTACGGGCAAACCCACATGATCGTCTACGTTGGTATCTGTTCACTCATGGGATCTCTTACGGTTATGAGTGTGAAAGCAGTGGGAATAGCTCTGAAGCTGACGTTTTCCGGAACAAATCAATTCAAATACTTCGAGACTTGGATTTTTGTGTTGGTAGTGACAGTATGCTGTCTTTTTCAGATCAACTACTTAAACAAGGCTCTTGACACGTTTAACACTGCCGTTATATCTCCAGTCTACTACGTTATGTTCACAATATTCACCATTCTTGCCAGTGTGATCTTGTTTAAGGACTGGGAGTCACAAAATGGATCGATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

276

Amino Acids

30.02

Weight (kDa)

9.26

Isoelectric Point (pI)

15.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	6 - 271	5.1e-127	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23870 AT3G23870 AT3G23870 AT3G23870 AT3G23870 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800 AT4G13800
fragaria_vesca	FvH4_4g13390 FvH4_4g13390
malus_domestica	MD04G1016400.v1.1 MD13G1282200.v1.1
prunus_persica	Prupe.1G163100_v2.0.a1 Prupe.1G163100_v2.0.a1 Prupe.1G163100_v2.0.a1
pyrus_communis	pycom04g01240
rosa_chinensis	RchiOBHm_Chr4g0413761
rosa_laevigata	RLG00000008195
rosa_multiflora	Rmu_sc0020809.1_g000002
rosa_roxburghii	Rroxscaffold_5G00357680
rosa_rugosa	Rorug04G0123200
rosa_samantha	Rh4AG182600 Rh4BG181800 Rh4CG194000 Rh4DG178200
rosa_wichuraiana	Rw4G015300 Rw4G015410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	140, 528, 741
AccII	CGCG	2 cut(s)	13, 41
AccIII	TCCGGA	1 cut(s)	611
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	2 cut(s)	562, 823
AcuI	CTGAAG	2 cut(s)	320, 617
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	165, 506
AflIII	ACRYGT	2 cut(s)	452, 711
AgsI	TTSAA	2 cut(s)	51, 628
AhdI	GACNNNNNGTC	1 cut(s)	802
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	4 cut(s)	215, 257, 593, 601
AluI	AGCT	4 cut(s)	215, 257, 593, 601
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	2 cut(s)	562, 823
Aor13HI	TCCGGA	1 cut(s)	611
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	212, 430
AspLEI	GCGC	2 cut(s)	68, 110
AsuHPI	GGTGA	1 cut(s)	757
BaeI	ACNNNNGTAYC	2 cut(s)	520, 553
BbvI	GCAGC	2 cut(s)	224, 442
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	1 cut(s)	69
BfoI	RGCGCY	2 cut(s)	69, 111
BisI	GCNGC	2 cut(s)	213, 431
BlsI	GCNGC	2 cut(s)	214, 432
Bme1390I	CCNGG	1 cut(s)	435
BmeRI	GACNNNNNGTC	1 cut(s)	802
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	808
BmsI	GCATC	1 cut(s)	427
BmuI	ACTGGG	1 cut(s)	808
BpmI	CTGGAG	2 cut(s)	213, 720
Bsa29I	ATCGAT	1 cut(s)	818
BsaAI	YACGTR	1 cut(s)	144
BsaWI	WCCGGW	2 cut(s)	489, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 506
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	4 cut(s)	118, 737, 777, 803
Bse3DI	GCAATG	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	611
BseBI	CCWGG	1 cut(s)	435
BseCI	ATCGAT	1 cut(s)	818
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	165, 506
BseMI	GCAATG	1 cut(s)	189
BseNI	ACTGG	4 cut(s)	118, 737, 777, 803
BseXI	GCAGC	2 cut(s)	224, 442
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	2 cut(s)	13, 41
BshFI	GGCC	1 cut(s)	104
BshVI	ATCGAT	1 cut(s)	818
BsiSI	CCGG	3 cut(s)	105, 490, 612
BslI	CCNNNNNNNGG	2 cut(s)	165, 506
BsmAI	GTCTC	1 cut(s)	632
BsnI	GGCC	1 cut(s)	104
Bsp13I	TCCGGA	1 cut(s)	611
Bsp143I	GATC	6 cut(s)	522, 554, 684, 783, 815, 819
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	104
BspDI	ATCGAT	1 cut(s)	818
BspEI	TCCGGA	1 cut(s)	611
BspFNI	CGCG	2 cut(s)	13, 41
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	562, 823
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	4 cut(s)	118, 737, 777, 803
BssAI	RCCGGY	1 cut(s)	104
BssMI	GATC	6 cut(s)	522, 554, 684, 783, 815, 819
BssNAI	GTATAC	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	565, 667
BstAPI	GCANNNNNTGC	2 cut(s)	218, 284
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	106, 285, 375
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	2 cut(s)	13, 41
BstH2I	RGCGCY	2 cut(s)	69, 111
BstHHI	GCGC	2 cut(s)	68, 110
BstKTI	GATC	6 cut(s)	525, 557, 687, 786, 818, 822
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	6 cut(s)	522, 554, 684, 783, 815, 819
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 218, 284, 415
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	2 cut(s)	377, 456
BstSCI	CCNGG	1 cut(s)	433
BstSNI	TACGTA	1 cut(s)	144
BstUI	CGCG	2 cut(s)	13, 41
BstV1I	GCAGC	2 cut(s)	224, 442
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BstZ17I	GTATAC	1 cut(s)	141
Bsu15I	ATCGAT	1 cut(s)	818
BsuRI	GGCC	1 cut(s)	104
BsuTUI	ATCGAT	1 cut(s)	818
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	3 cut(s)	285, 588, 720
BtsIMutI	CAGTG	5 cut(s)	280, 285, 588, 720, 784
Cac8I	GCNNGC	3 cut(s)	106, 285, 375
CfoI	GCGC	2 cut(s)	68, 110
Cfr10I	RCCGGY	1 cut(s)	104
ClaI	ATCGAT	1 cut(s)	818
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	7 cut(s)	26, 374, 422, 453, 520, 550, 823
CviJI	RGCY	9 cut(s)	104, 170, 203, 215, 257, 433, 593, 601, 704
CviKI_1	RGCY	9 cut(s)	104, 170, 203, 215, 257, 433, 593, 601, 704
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	6 cut(s)	524, 556, 686, 785, 817, 821
DpnII	GATC	6 cut(s)	522, 554, 684, 783, 815, 819
DriI	GACNNNNNGTC	1 cut(s)	802
Eam1105I	GACNNNNNGTC	1 cut(s)	802
Eco105I	TACGTA	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	9
Eco57I	CTGAAG	2 cut(s)	320, 617
EcoRII	CCWGG	1 cut(s)	433
EcoRV	GATATC	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	223
FaeI	CATG	7 cut(s)	29, 377, 425, 456, 523, 553, 826
FatI	CATG	7 cut(s)	25, 373, 421, 452, 519, 549, 822
FblI	GTMKAC	3 cut(s)	140, 528, 741
Fnu4HI	GCNGC	2 cut(s)	213, 431
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	213, 431
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	2 cut(s)	67, 109
GluI	GCNGC	2 cut(s)	213, 431
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	2 cut(s)	213, 720
HaeII	RGCGCY	2 cut(s)	69, 111
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	3 cut(s)	105, 490, 612
HhaI	GCGC	2 cut(s)	68, 110
Hin1II	CATG	7 cut(s)	29, 377, 425, 456, 523, 553, 826
Hin6I	GCGC	2 cut(s)	66, 108
HinP1I	GCGC	2 cut(s)	66, 108
HinfI	GANTC	3 cut(s)	30, 466, 803
HpaII	CCGG	3 cut(s)	105, 490, 612
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	5 cut(s)	141, 529, 545, 742, 756
Hpy188I	TCNGA	3 cut(s)	300, 597, 684
Hpy188III	TCNNGA	5 cut(s)	82, 463, 612, 637, 707
Hpy8I	GTNNAC	5 cut(s)	141, 529, 545, 742, 756
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	565, 667
HpyCH4IV	ACGT	5 cut(s)	143, 531, 605, 713, 747
HpyCH4V	TGCA	5 cut(s)	212, 221, 278, 313, 373
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 218, 284, 415
HpySE526I	ACGT	5 cut(s)	143, 531, 605, 713, 747
Hsp92II	CATG	7 cut(s)	29, 377, 425, 456, 523, 553, 826
HspAI	GCGC	2 cut(s)	66, 108
Kpn2I	TCCGGA	1 cut(s)	611
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	6 cut(s)	522, 554, 684, 783, 815, 819
LmnI	GCTCC	3 cut(s)	232, 254, 382
Lsp1109I	GCAGC	2 cut(s)	224, 442
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	5 cut(s)	143, 531, 605, 713, 747
MaeIII	GTNAC	4 cut(s)	14, 241, 661, 804
MalI	GATC	6 cut(s)	524, 556, 686, 785, 817, 821
MboI	GATC	6 cut(s)	522, 554, 684, 783, 815, 819
MboII	GAAGA	2 cut(s)	39, 97
MflI	RGATCY	1 cut(s)	554
MluCI	AATT	3 cut(s)	234, 308, 623
MlyI	GAGTC	2 cut(s)	24, 812
MnlI	CCTC	2 cut(s)	128, 491
Mph1103I	ATGCAT	1 cut(s)	223
MroI	TCCGGA	1 cut(s)	611
MroNI	GCCGGC	1 cut(s)	104
MseI	TTAA	6 cut(s)	96, 260, 405, 695, 717, 792
MspI	CCGG	3 cut(s)	105, 490, 612
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MvnI	CGCG	2 cut(s)	13, 41
MwoI	GCNNNNNNNGC	4 cut(s)	209, 218, 284, 415
NaeI	GCCGGC	1 cut(s)	106
NdeII	GATC	6 cut(s)	522, 554, 684, 783, 815, 819
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	7 cut(s)	29, 377, 425, 456, 523, 553, 826
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	3 cut(s)	14, 661, 804
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	2 cut(s)	377, 456
PaeI	GCATGC	1 cut(s)	377
PciI	ACATGT	1 cut(s)	452
PdiI	GCCGGC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	214, 432
PleI	GAGTC	2 cut(s)	24, 811
PpsI	GAGTC	2 cut(s)	24, 811
Ppu21I	YACGTR	1 cut(s)	144
PscI	ACATGT	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	554
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	6 cut(s)	96, 260, 405, 695, 717, 792
SatI	GCNGC	2 cut(s)	213, 431
Sau3AI	GATC	6 cut(s)	522, 554, 684, 783, 815, 819
SchI	GAGTC	2 cut(s)	24, 812
ScrFI	CCNGG	1 cut(s)	435
SfaNI	GCATC	1 cut(s)	427
SnaBI	TACGTA	1 cut(s)	144
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	3 cut(s)	234, 308, 623
SsiI	CCGC	1 cut(s)	41
SspI	AATATT	1 cut(s)	762
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	565, 667
TaiI	ACGT	5 cut(s)	146, 534, 608, 716, 750
TaqI	TCGA	2 cut(s)	636, 818
TasI	AATT	3 cut(s)	234, 308, 623
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	6 cut(s)	96, 260, 405, 695, 717, 792
Tru9I	TTAA	6 cut(s)	96, 260, 405, 695, 717, 792
TscAI	CASTG	5 cut(s)	280, 285, 588, 727, 784
TseFI	GTSAC	3 cut(s)	14, 661, 804
TseI	GCWGC	2 cut(s)	212, 430
Tsp45I	GTSAC	3 cut(s)	14, 661, 804
TspDTI	ATGAA	4 cut(s)	14, 49, 168, 430
TspGWI	ACGGA	2 cut(s)	237, 391
TspRI	CASTG	5 cut(s)	280, 285, 588, 727, 784
XceI	RCATGY	2 cut(s)	377, 456
XmiI	GTMKAC	3 cut(s)	140, 528, 741
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.