Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008938

Physical Location & Seq

Genomic Coordinates Reverse (-)

8013575 .. 8016582

Gene Structure 3008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGGTCGATCTCAAGAACAGGGACAGGGACAGGGTCCGGTTCACAGCATTCGGCTATCTACCGTAGGTGCGACCCGGCCGACAGAGACGGGTACGACCCACGAACCAACCGGTTTAGACCTAGCCATGAAGCTCCACTACCTCAAGGCGGCATACATTTACTCAGCCGAGACAGCACGTGACTTAACCGTGAGACACCTGAAGGAGGCCATGTTCATGTTGTTCGACCAGATCGCTTGGACCACAGGCAGGTTCTCAAGGAGAGACTCGGGCCGTCCGTACATCAAGTGCAACGACTGCGGCACACGTTTCGTGGAAGGTCAATGCAATCTCACTGTGGAGGAGTGGCTCAGTAAACCGGACCGGTCAGTTGATGAGTTTCTGGTTTATCATCATCCTATTGGACCGGAATTGACGTTCTCTCCTTTGATCTACGTTCAGATGACCCGGTTTAAATGCGGAGGATTAGGGTTGGGCCTAAGCTGGGCCAATATAATAGGAGACGCATTCTCTCTGTTCTATGCCTTCAACTTATGGGCTAAGGCCATTACCGGAGAAAAGATTTATGCCCCAACAACACCCTCTATAGGAGAGAGAAGGTTCCAAAGCCCAAACCCGACGGTTAAAGATCCGGTTTCAATTAAACGGGTCGAACCCGTTGGAGATCTCTGGGTCACTCCAAACGACAAGAAATTGGCGAATTACTGTTTCAATCTCTCAGTCGCCGATCAGATATCACCACATTTTCCGGCGAAGGGAGATGACTCGATTCCGGTGTTCGAGATTCTCGCCGGAATCATATGGAAATGCATAGCTAAAGTTAGGGTAGAGCCAAAGCCTGTAACGGTTACGATCATTAAAAAAGATCCGAACGATCTGAAACTTAATGCGATTCGAAACAGTCAGGTGATCAGCTCAGTGAGCGTGGATTTTCCGGTGGCGGAAGCGACGGTGGAGGAATTAGTGAAAGCTATGGGGGAAGCGAAGGATGAGAGATGTGGAATTGAGGAGATCGGAGAGAGTTGCGATGGGAATTTGGATTTTGTTGTTTATGGAGCGAAATTGACGTTTCTGGATCTGACTGGTGAGGATTTGTATGAGGCGAAAGTGATGGGGAAGTCGCCGGAGTCGGTTTATTGTAATGTGGAGGGGATAGGGGAGGAGGGATTGGTGGTTGTTTACGCGGCGGCGAAATCGGAGGAGAGGGTTGTGACGGTTACGTTGCCGGAGGAAGAGATGGAGAGGGTAAAATTGGAATTTAAGAAGTTTGGTTTGATCGCGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009555 GO:0009579 GO:0009987 GO:0010025 GO:0010166 GO:0012505 GO:0016020 GO:0016053 GO:0019752 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0034357 GO:0042651 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0055035 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

428

Amino Acids

47.45

Weight (kDa)

5.41

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	39 - 278	1e-22	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23840 AT4G13840
fragaria_vesca	FvH4_4g13360
malus_domestica	MD04G1016700.v1.1 MD04G1016900.v1.1
prunus_persica	Prupe.1G163500_v2.0.a1
pyrus_communis	pycom04g01280 pycom04g01300
rosa_chinensis	RchiOBHm_Chr4g0413701
rosa_laevigata	RLG00000008200
rosa_multiflora	Rmu_co8063286.1_g000001 Rmu_co8298563.1_g000001 Rmu_sc0004133.1_g000007 Rmu_sc0033890.1_g000002
rosa_roxburghii	Rroxscaffold_5G00357640
rosa_rugosa	Rorug04G0122700
rosa_samantha	Rh4AG181900 Rh4BG181000 Rh4BG181100 Rh4CG193100 Rh4DG177500
rosa_wichuraiana	Rw4G015220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	240
AccII	CGCG	2 cut(s)	1184, 1280
AciI	CCGC	6 cut(s)	149, 300, 459, 941, 1184, 1187
AclWI	GGATC	3 cut(s)	623, 860, 1083
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	1033, 1256
AcuI	CTGAAG	1 cut(s)	221
AcvI	CACGTG	1 cut(s)	179
AfaI	GTAC	2 cut(s)	94, 281
AfiI	CCNNNNNNNGG	6 cut(s)	148, 205, 249, 484, 587, 755
AflIII	ACRYGT	1 cut(s)	305
AgeI	ACCGGT	2 cut(s)	110, 363
AgsI	TTSAA	3 cut(s)	529, 639, 712
AloI	GAACNNNNNNTCC	4 cut(s)	197, 229, 401, 433
AluBI	AGCT	5 cut(s)	133, 483, 815, 915, 971
AluI	AGCT	5 cut(s)	133, 483, 815, 915, 971
Alw26I	GTCTC	5 cut(s)	80, 164, 187, 258, 495
AlwI	GGATC	3 cut(s)	623, 860, 1083
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	6 cut(s)	77, 207, 271, 475, 486, 543
ApoI	RAATTY	2 cut(s)	1033, 1256
AsiGI	ACCGGT	2 cut(s)	110, 363
AspLEI	GCGC	1 cut(s)	1282
AspS9I	GGNCC	7 cut(s)	35, 240, 271, 361, 404, 475, 486
AsuC2I	CCSGG	2 cut(s)	76, 448
AsuHPI	GGTGA	3 cut(s)	729, 919, 1097
AsuII	TTCGAA	1 cut(s)	895
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	4 cut(s)	35, 240, 361, 404
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbrPI	CACGTG	1 cut(s)	179
BccI	CCATC	3 cut(s)	1022, 1105, 1231
BceAI	ACGGC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BclI	TGATCA	1 cut(s)	909
BcnI	CCSGG	2 cut(s)	76, 448
BcoDI	GTCTC	5 cut(s)	80, 164, 187, 258, 495
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	585
BfuAI	ACCTGC	1 cut(s)	240
BglII	AGATCT	1 cut(s)	664
BisI	GCNGC	4 cut(s)	150, 301, 1185, 1188
BlsI	GCNGC	4 cut(s)	151, 302, 1186, 1189
Bme1390I	CCNGG	2 cut(s)	76, 448
Bme18I	GGWCC	4 cut(s)	35, 240, 361, 404
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	7 cut(s)	35, 240, 271, 361, 404, 475, 486
BmiI	GGNNCC	2 cut(s)	36, 602
BmrFI	CCNGG	2 cut(s)	76, 448
Bpu10I	CCTNAGC	2 cut(s)	479, 540
Bpu14I	TTCGAA	1 cut(s)	895
BpuEI	CTTGAG	2 cut(s)	128, 241
BpuMI	CCSGG	2 cut(s)	76, 448
BsaAI	YACGTR	1 cut(s)	179
BsaWI	WCCGGW	9 cut(s)	37, 110, 358, 363, 406, 551, 631, 772, 934
BsaXI	ACNNNNNCTCC	4 cut(s)	197, 227, 406, 436
Bsc4I	CCNNNNNNNGG	6 cut(s)	148, 205, 249, 484, 587, 755
Bse118I	RCCGGY	2 cut(s)	110, 363
Bse1I	ACTGG	1 cut(s)	1087
BseGI	GGATG	2 cut(s)	394, 994
BseLI	CCNNNNNNNGG	6 cut(s)	148, 205, 249, 484, 587, 755
BseMII	CTCAG	4 cut(s)	177, 364, 732, 930
BseNI	ACTGG	1 cut(s)	1087
BseRI	GAGGAG	4 cut(s)	356, 1022, 1175, 1214
BseX3I	CGGCCG	1 cut(s)	77
BseYI	CCCAGC	1 cut(s)	483
Bsh1236I	CGCG	2 cut(s)	1184, 1280
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	6 cut(s)	79, 209, 273, 477, 488, 545
BshTI	ACCGGT	2 cut(s)	110, 363
BsiEI	CGRYCG	1 cut(s)	80
BsiHKCI	CYCGRG	1 cut(s)	268
BslFI	GGGAC	2 cut(s)	36, 42
BslI	CCNNNNNNNGG	6 cut(s)	148, 205, 249, 484, 587, 755
BsmAI	GTCTC	5 cut(s)	80, 164, 187, 258, 495
BsmBI	CGTCTC	2 cut(s)	80, 495
BsmFI	GGGAC	2 cut(s)	36, 42
BsmI	GAATGC	2 cut(s)	48, 506
BsnI	GGCC	6 cut(s)	79, 209, 273, 477, 488, 545
BsoBI	CYCGRG	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	895
BspACI	CCGC	6 cut(s)	149, 300, 459, 941, 1184, 1187
BspANI	GGCC	6 cut(s)	79, 209, 273, 477, 488, 545
BspCNI	CTCAG	4 cut(s)	176, 363, 731, 929
BspFNI	CGCG	2 cut(s)	1184, 1280
BspLI	GGNNCC	2 cut(s)	36, 602
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	3 cut(s)	623, 860, 1083
BspT104I	TTCGAA	1 cut(s)	895
BsrFI	RCCGGY	2 cut(s)	110, 363
BsrI	ACTGG	1 cut(s)	1087
BssAI	RCCGGY	2 cut(s)	110, 363
Bst4CI	ACNGT	9 cut(s)	64, 190, 337, 622, 707, 847, 902, 952, 1216
Bst6I	CTCTTC	1 cut(s)	1227
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstBAI	YACGTR	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	895
BstDEI	CTNAG	6 cut(s)	163, 350, 479, 540, 718, 916
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	394, 994
BstFNI	CGCG	2 cut(s)	1184, 1280
BstHHI	GCGC	1 cut(s)	1282
BstMAI	GTCTC	5 cut(s)	80, 164, 187, 258, 495
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 297, 921
BstSCI	CCNGG	2 cut(s)	74, 446
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	2 cut(s)	1184, 1280
BstX2I	RGATCY	4 cut(s)	628, 664, 865, 1075
BstYI	RGATCY	4 cut(s)	628, 664, 865, 1075
BstZI	CGGCCG	1 cut(s)	77
BsuRI	GGCC	6 cut(s)	79, 209, 273, 477, 488, 545
BtgZI	GCGATG	1 cut(s)	1041
BtsCI	GGATG	2 cut(s)	394, 994
BtsIMutI	CAGTG	2 cut(s)	333, 924
BveI	ACCTGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	1282
Cfr10I	RCCGGY	2 cut(s)	110, 363
Cfr13I	GGNCC	7 cut(s)	35, 240, 271, 361, 404, 475, 486
CpoI	CGGWCCG	1 cut(s)	361
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	93, 280
CspAI	ACCGGT	2 cut(s)	110, 363
CspI	CGGWCCG	1 cut(s)	361
CviAII	CATG	4 cut(s)	127, 211, 217, 1284
CviQI	GTAC	2 cut(s)	93, 280
DdeI	CTNAG	6 cut(s)	163, 350, 479, 540, 718, 916
DraI	TTTAAA	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	77
EagI	CGGCCG	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	1227
EarI	CTCTTC	1 cut(s)	1227
EciI	GGCGGA	1 cut(s)	956
EclXI	CGGCCG	1 cut(s)	77
Eco32I	GATATC	1 cut(s)	735
Eco47I	GGWCC	4 cut(s)	35, 240, 361, 404
Eco52I	CGGCCG	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	221
Eco72I	CACGTG	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	735
EcoT22I	ATGCAT	1 cut(s)	812
Esp3I	CGTCTC	2 cut(s)	80, 495
FaeI	CATG	4 cut(s)	130, 214, 220, 1287
FaqI	GGGAC	2 cut(s)	36, 42
FatI	CATG	4 cut(s)	126, 210, 216, 1283
FauNDI	CATATG	1 cut(s)	800
FbaI	TGATCA	1 cut(s)	909
Fnu4HI	GCNGC	4 cut(s)	150, 301, 1185, 1188
FokI	GGATG	2 cut(s)	381, 1001
Fsp4HI	GCNGC	4 cut(s)	150, 301, 1185, 1188
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	1281
GluI	GCNGC	4 cut(s)	150, 301, 1185, 1188
GsaI	CCCAGC	1 cut(s)	487
HaeIII	GGCC	6 cut(s)	79, 209, 273, 477, 488, 545
HgaI	GACGC	1 cut(s)	512
HhaI	GCGC	1 cut(s)	1282
Hin1II	CATG	4 cut(s)	130, 214, 220, 1287
Hin6I	GCGC	1 cut(s)	1280
HinP1I	GCGC	1 cut(s)	1280
HinfI	GANTC	7 cut(s)	266, 764, 769, 784, 795, 892, 1127
HphI	GGTGA	3 cut(s)	729, 919, 1097
Hpy166II	GTNNAC	3 cut(s)	43, 356, 1180
Hpy188I	TCNGA	7 cut(s)	441, 732, 870, 879, 1016, 1080, 1198
Hpy188III	TCNNGA	3 cut(s)	14, 781, 1073
Hpy8I	GTNNAC	3 cut(s)	43, 356, 1180
Hpy99I	CGWCG	2 cut(s)	622, 952
HpyAV	CCTTC	6 cut(s)	196, 311, 535, 591, 748, 979
HpyCH4III	ACNGT	9 cut(s)	64, 190, 337, 622, 707, 847, 902, 952, 1216
HpyCH4IV	ACGT	6 cut(s)	178, 307, 416, 435, 1067, 1220
HpyCH4V	TGCA	3 cut(s)	291, 327, 810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 297, 921
HpyF3I	CTNAG	6 cut(s)	163, 350, 479, 540, 718, 916
HpySE526I	ACGT	6 cut(s)	178, 307, 416, 435, 1067, 1220
Hsp92II	CATG	4 cut(s)	130, 214, 220, 1287
HspAI	GCGC	1 cut(s)	1280
Ksp22I	TGATCA	1 cut(s)	909
LmnI	GCTCC	2 cut(s)	138, 1055
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	6 cut(s)	178, 307, 416, 435, 1067, 1220
MaeIII	GTNAC	6 cut(s)	179, 673, 841, 847, 1210, 1216
MboII	GAAGA	1 cut(s)	1244
MflI	RGATCY	4 cut(s)	628, 664, 865, 1075
MlyI	GAGTC	3 cut(s)	260, 758, 1136
MmeI	TCCRAC	1 cut(s)	640
Mph1103I	ATGCAT	1 cut(s)	812
MseI	TTAA	7 cut(s)	185, 453, 624, 642, 858, 885, 1260
MslI	CAYNNNNRTG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	76, 448
Mva1269I	GAATGC	2 cut(s)	48, 506
MvnI	CGCG	2 cut(s)	1184, 1280
MwoI	GCNNNNNNNGC	3 cut(s)	173, 297, 921
NciI	CCSGG	2 cut(s)	76, 448
NdeI	CATATG	1 cut(s)	800
NlaIII	CATG	4 cut(s)	130, 214, 220, 1287
NlaIV	GGNNCC	2 cut(s)	36, 602
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	3 cut(s)	179, 673, 1210
NsiI	ATGCAT	1 cut(s)	812
NspV	TTCGAA	1 cut(s)	895
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PctI	GAATGC	2 cut(s)	48, 506
PfeI	GAWTC	4 cut(s)	769, 784, 795, 892
PflFI	GACNNNGTC	1 cut(s)	33
PinAI	ACCGGT	2 cut(s)	110, 363
PkrI	GCNGC	4 cut(s)	151, 302, 1186, 1189
PleI	GAGTC	3 cut(s)	260, 758, 1135
PmaCI	CACGTG	1 cut(s)	179
PmlI	CACGTG	1 cut(s)	179
PpsI	GAGTC	3 cut(s)	260, 758, 1135
Ppu21I	YACGTR	1 cut(s)	179
PspCI	CACGTG	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	36, 602
PspPI	GGNCC	7 cut(s)	35, 240, 271, 361, 404, 475, 486
PsuI	RGATCY	4 cut(s)	628, 664, 865, 1075
PsyI	GACNNNGTC	1 cut(s)	33
RsaI	GTAC	2 cut(s)	94, 281
RsaNI	GTAC	2 cut(s)	93, 280
RseI	CAYNNNNRTG	1 cut(s)	215
Rsr2I	CGGWCCG	1 cut(s)	361
RsrII	CGGWCCG	1 cut(s)	361
SaqAI	TTAA	7 cut(s)	185, 453, 624, 642, 858, 885, 1260
SatI	GCNGC	4 cut(s)	150, 301, 1185, 1188
Sau96I	GGNCC	7 cut(s)	35, 240, 271, 361, 404, 475, 486
SchI	GAGTC	3 cut(s)	260, 758, 1136
ScrFI	CCNGG	2 cut(s)	76, 448
SfcI	CTRYAG	1 cut(s)	585
SfuI	TTCGAA	1 cut(s)	895
SinI	GGWCC	4 cut(s)	35, 240, 361, 404
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	3 cut(s)	12, 143, 256
SmoI	CTYRAG	3 cut(s)	12, 143, 256
SsiI	CCGC	6 cut(s)	149, 300, 459, 941, 1184, 1187
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	74, 446
TaaI	ACNGT	9 cut(s)	64, 190, 337, 622, 707, 847, 902, 952, 1216
TaiI	ACGT	6 cut(s)	181, 310, 419, 438, 1070, 1223
TaqI	TCGA	6 cut(s)	7, 225, 651, 767, 780, 895
TauI	GCSGC	4 cut(s)	152, 303, 1187, 1190
TfiI	GAWTC	4 cut(s)	769, 784, 795, 892
Tru1I	TTAA	7 cut(s)	185, 453, 624, 642, 858, 885, 1260
Tru9I	TTAA	7 cut(s)	185, 453, 624, 642, 858, 885, 1260
TscAI	CASTG	2 cut(s)	340, 924
TseFI	GTSAC	3 cut(s)	179, 673, 1210
Tsp45I	GTSAC	3 cut(s)	179, 673, 1210
TspDTI	ATGAA	2 cut(s)	143, 205
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	2 cut(s)	340, 924
Tth111I	GACNNNGTC	1 cut(s)	33
VpaK11BI	GGWCC	4 cut(s)	35, 240, 361, 404
XagI	CCTNNNNNAGG	1 cut(s)	203
XapI	RAATTY	2 cut(s)	1033, 1256
XspI	CTAG	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.