Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008938

Physical Location & Seq

Genomic Coordinates Forward (+)

31989873 .. 31992269

Gene Structure 2397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG181000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGTTTTAGCCAAGGAAGATAACTTGGTCTATGGCTTTAGGCTTTCCTCGGTTGGGGCGGGGAAGATTACGGAGCCAAATACGGTTCATGAACCAAGTGGCATAGACTTGGCTATGAAGCTCCACTACCTAAGAGGAGTCTACTTCTTCAGTAGTGAGGCAGCCGAAGGGCTAACCGTCTTGAAAATAAAGGAAGCCATGTTCGACTGGTTGTGTGCACACTTCCGGGAAATGGGCCGGTTCCGGAGGTCAGAATCCTCGGGACGGCCGTATGTTAAGTGTAACGACTGTGGGGCGAGGTTCATTGAGGCTCAGTCTGATAAGACCCTTGAAGAATGGTTAGGGATGGACTGGTCTCTCCACAAGCTACTTGTTTCTAACCAAATCATTGGCCCTGAGCTGTTCTTCTCTCCTCCTGTTCTCTTCCAGTGGACCCGTTTTAAGTGCGGAGGAGTGTCAGTAGGGCTTAGCTGGGCCCATGTTCTGGGAGATGCAATAGCTGCTTCAGAGTACTTCTTAAATGGCTTGAGTCGAACCATGGCTGGTAAGGAGCCTCCTAGGCTACCTTACTCGGAAACATCCAAAACAAATATTCAGAAACGTGAAGGGTCTTCACCACTAGCCCTAAAACAAGTAGAATCGGTTGGTGACCACTGGATCACACCCAATAACCACAAGATGGAAACATTCTCGTTCCCCATCACTCCCACCCAGCTAAACAGCTTGGTGCTCAAGTTACTGGGTCAGAATCCAAACCCAGCTGAAGAAATCCCAACTTTCGAGCTCATTTGTGGCGTAATTTGGCAATGTGTAGCCAAAGTGAGAGAAGGGTCGGAGCCGAAATTGGTGACAATCTGCAGAAATGGTACTAAACGTGCAGCTGGGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009555 GO:0009579 GO:0009987 GO:0010025 GO:0010166 GO:0016020 GO:0016053 GO:0019752 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0034357 GO:0042651 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0055035 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

296

Amino Acids

33.01

Weight (kDa)

7.61

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	35 - 279	3.3e-26	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23840 AT4G13840
fragaria_vesca	FvH4_4g13360
malus_domestica	MD04G1016700.v1.1 MD04G1016900.v1.1
prunus_persica	Prupe.1G163500_v2.0.a1
pyrus_communis	pycom04g01280 pycom04g01300
rosa_chinensis	RchiOBHm_Chr4g0413701
rosa_laevigata	RLG00000008200
rosa_multiflora	Rmu_co8063286.1_g000001 Rmu_co8298563.1_g000001 Rmu_sc0004133.1_g000007 Rmu_sc0033890.1_g000002
rosa_roxburghii	Rroxscaffold_5G00357640
rosa_rugosa	Rorug04G0122700
rosa_samantha	Rh4AG181900 Rh4BG181000 Rh4BG181100 Rh4CG193100 Rh4DG177500
rosa_wichuraiana	Rw4G015220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	484, 679
AccI	GTMKAC	1 cut(s)	141
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	2 cut(s)	59, 447
AclWI	GGATC	1 cut(s)	665
AcoI	YGGCCR	1 cut(s)	266
AcuI	CTGAAG	3 cut(s)	133, 489, 783
AfaI	GTAC	2 cut(s)	512, 868
AfiI	CCNNNNNNNGG	5 cut(s)	54, 232, 264, 484, 679
AgsI	TTSAA	2 cut(s)	184, 332
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
Alw21I	GWGCWC	3 cut(s)	220, 732, 786
Alw26I	GTCTC	1 cut(s)	360
Alw44I	GTGCAC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	259
Aor13HI	TCCGGA	1 cut(s)	243
AoxI	GGCC	4 cut(s)	235, 266, 391, 474
ApaI	GGGCCC	1 cut(s)	478
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	3 cut(s)	161, 500, 878
AspA2I	CCTAGG	1 cut(s)	557
AspS9I	GGNCC	5 cut(s)	235, 392, 432, 474, 475
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	3 cut(s)	606, 659, 859
AvaI	CYCGRG	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	432
AvrII	CCTAGG	1 cut(s)	557
BaeGI	GKGCMC	2 cut(s)	220, 478
BanII	GRGCYC	2 cut(s)	478, 786
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	3 cut(s)	220, 732, 786
BbvI	GCAGC	2 cut(s)	173, 487
BccI	CCATC	3 cut(s)	340, 673, 707
BceAI	ACGGC	2 cut(s)	253, 281
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	2 cut(s)	558, 620
BfmI	CTRYAG	1 cut(s)	856
BglI	GCCNNNNNGGC	1 cut(s)	559
BisI	GCNGC	3 cut(s)	162, 501, 879
BlnI	CCTAGG	1 cut(s)	557
BlpI	GCTNAGC	1 cut(s)	467
BlsI	GCNGC	3 cut(s)	163, 502, 880
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	432
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	5 cut(s)	235, 392, 432, 474, 475
BmiI	GGNNCC	6 cut(s)	75, 242, 434, 476, 552, 837
BmrFI	CCNGG	1 cut(s)	227
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	1 cut(s)	481
BmuI	ACTGGG	1 cut(s)	749
BpiI	GAAGAC	1 cut(s)	603
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	467
BpuEI	CTTGAG	2 cut(s)	547, 716
BpuMI	CCSGG	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	5 cut(s)	12, 48, 258, 537, 557
BsaWI	WCCGGW	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 232, 264, 484, 679
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	5 cut(s)	212, 356, 427, 659, 744
Bse3DI	GCAATG	1 cut(s)	812
BseAI	TCCGGA	1 cut(s)	243
BseDI	CCNNGG	5 cut(s)	12, 48, 258, 537, 557
BseGI	GGATG	2 cut(s)	351, 578
BseLI	CCNNNNNNNGG	5 cut(s)	54, 232, 264, 484, 679
BseMI	GCAATG	1 cut(s)	812
BseMII	CTCAG	2 cut(s)	326, 387
BseNI	ACTGG	5 cut(s)	212, 356, 427, 659, 744
BseRI	GAGGAG	3 cut(s)	150, 402, 465
BseSI	GKGCMC	2 cut(s)	220, 478
BseX3I	CGGCCG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	173, 487
BseYI	CCCAGC	4 cut(s)	471, 711, 757, 881
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	4 cut(s)	237, 268, 393, 476
BsiEI	CGRYCG	1 cut(s)	269
BsiHKAI	GWGCWC	3 cut(s)	220, 732, 786
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	3 cut(s)	226, 238, 244
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	5 cut(s)	54, 232, 264, 484, 679
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	4 cut(s)	237, 268, 393, 476
Bso31I	GGTCTC	1 cut(s)	360
BsoBI	CYCGRG	1 cut(s)	259
Bsp120I	GGGCCC	1 cut(s)	474
Bsp1286I	GDGCHC	4 cut(s)	220, 478, 732, 786
Bsp13I	TCCGGA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	657
Bsp1720I	GCTNAGC	1 cut(s)	467
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	2 cut(s)	59, 447
BspANI	GGCC	4 cut(s)	237, 268, 393, 476
BspCNI	CTCAG	2 cut(s)	325, 388
BspEI	TCCGGA	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	6 cut(s)	75, 242, 434, 476, 552, 837
BspMAI	CTGCAG	1 cut(s)	860
BspPI	GGATC	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	360
BsrDI	GCAATG	1 cut(s)	812
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	5 cut(s)	212, 356, 427, 659, 744
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	5 cut(s)	12, 48, 258, 537, 557
BssMI	GATC	1 cut(s)	657
BssT1I	CCWWGG	3 cut(s)	12, 537, 557
Bst4CI	ACNGT	3 cut(s)	85, 178, 290
Bst6I	CTCTTC	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstDEI	CTNAG	4 cut(s)	131, 312, 396, 467
BstDSI	CCRYGG	1 cut(s)	537
BstEII	GGTNACC	1 cut(s)	647
BstF5I	GGATG	2 cut(s)	351, 578
BstKTI	GATC	1 cut(s)	660
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	657
BstMCI	CGRYCG	1 cut(s)	269
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 559
BstPI	GGTNACC	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	856
BstSLI	GKGCMC	2 cut(s)	220, 478
BstV1I	GCAGC	2 cut(s)	173, 487
BstV2I	GAAGAC	1 cut(s)	603
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstZI	CGGCCG	1 cut(s)	266
BsuRI	GGCC	4 cut(s)	237, 268, 393, 476
BtgI	CCRYGG	1 cut(s)	537
BtsCI	GGATG	2 cut(s)	351, 578
BtsIMutI	CAGTG	2 cut(s)	434, 652
CciI	TCATGA	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	5 cut(s)	235, 392, 432, 474, 475
Csp6I	GTAC	2 cut(s)	511, 867
CviAII	CATG	4 cut(s)	89, 199, 479, 538
CviQI	GTAC	2 cut(s)	511, 867
DdeI	CTNAG	4 cut(s)	131, 312, 396, 467
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
EaeI	YGGCCR	1 cut(s)	266
EagI	CGGCCG	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
Ecl136II	GAGCTC	1 cut(s)	784
EclXI	CGGCCG	1 cut(s)	266
Eco130I	CCWWGG	3 cut(s)	12, 537, 557
Eco24I	GRGCYC	2 cut(s)	478, 786
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	432
Eco52I	CGGCCG	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	784
Eco57I	CTGAAG	3 cut(s)	133, 489, 783
Eco88I	CYCGRG	1 cut(s)	259
Eco91I	GGTNACC	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	784
EcoO65I	GGTNACC	1 cut(s)	647
EcoT14I	CCWWGG	3 cut(s)	12, 537, 557
EcoT38I	GRGCYC	2 cut(s)	478, 786
ErhI	CCWWGG	3 cut(s)	12, 537, 557
FaeI	CATG	4 cut(s)	92, 202, 482, 541
FaiI	YATR	8 cut(s)	33, 90, 104, 116, 200, 273, 480, 539
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	4 cut(s)	88, 198, 478, 537
FauI	CCCGC	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	162, 501, 879
FokI	GGATG	2 cut(s)	358, 565
FriOI	GRGCYC	2 cut(s)	478, 786
Fsp4HI	GCNGC	3 cut(s)	162, 501, 879
FspBI	CTAG	2 cut(s)	558, 620
GluI	GCNGC	3 cut(s)	162, 501, 879
GsaI	CCCAGC	4 cut(s)	475, 715, 761, 885
HaeIII	GGCC	4 cut(s)	237, 268, 393, 476
HapII	CCGG	3 cut(s)	226, 238, 244
Hin1II	CATG	4 cut(s)	92, 202, 482, 541
HinfI	GANTC	5 cut(s)	138, 254, 529, 638, 748
HpaII	CCGG	3 cut(s)	226, 238, 244
HphI	GGTGA	3 cut(s)	606, 659, 859
Hpy166II	GTNNAC	3 cut(s)	142, 218, 432
Hpy188I	TCNGA	7 cut(s)	253, 319, 508, 574, 597, 747, 835
Hpy188III	TCNNGA	4 cut(s)	89, 181, 244, 261
Hpy8I	GTNNAC	3 cut(s)	142, 218, 432
HpyAV	CCTTC	3 cut(s)	161, 599, 821
HpyCH4III	ACNGT	3 cut(s)	85, 178, 290
HpyCH4IV	ACGT	2 cut(s)	601, 874
HpyCH4V	TGCA	4 cut(s)	218, 494, 858, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 559
HpyF3I	CTNAG	4 cut(s)	131, 312, 396, 467
HpySE526I	ACGT	2 cut(s)	601, 874
Hsp92II	CATG	4 cut(s)	92, 202, 482, 541
Kpn2I	TCCGGA	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	4 cut(s)	73, 126, 550, 835
Lsp1109I	GCAGC	2 cut(s)	173, 487
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	2 cut(s)	558, 620
MaeII	ACGT	2 cut(s)	601, 874
MaeIII	GTNAC	4 cut(s)	281, 647, 735, 847
MalI	GATC	1 cut(s)	659
MboI	GATC	1 cut(s)	657
MboII	GAAGA	8 cut(s)	29, 76, 139, 344, 397, 415, 603, 776
MhlI	GDGCHC	4 cut(s)	220, 478, 732, 786
MluCI	AATT	2 cut(s)	798, 842
MlyI	GAGTC	2 cut(s)	147, 538
MmeI	TCCRAC	1 cut(s)	813
MroI	TCCGGA	1 cut(s)	243
MseI	TTAA	3 cut(s)	276, 441, 518
MspA1I	CMGCKG	2 cut(s)	761, 881
MspI	CCGG	3 cut(s)	226, 238, 244
MspR9I	CCNGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	500, 559
NciI	CCSGG	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	537
NdeII	GATC	1 cut(s)	657
NlaIII	CATG	4 cut(s)	92, 202, 482, 541
NlaIV	GGNNCC	6 cut(s)	75, 242, 434, 476, 552, 837
NmuCI	GTSAC	2 cut(s)	647, 847
PagI	TCATGA	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PfeI	GAWTC	3 cut(s)	254, 638, 748
PflMI	CCANNNNNTGG	2 cut(s)	484, 679
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	163, 502, 880
PleI	GAGTC	2 cut(s)	146, 537
PpsI	GAGTC	2 cut(s)	146, 537
Psp124BI	GAGCTC	1 cut(s)	786
PspEI	GGTNACC	1 cut(s)	647
PspFI	CCCAGC	4 cut(s)	471, 711, 757, 881
PspN4I	GGNNCC	6 cut(s)	75, 242, 434, 476, 552, 837
PspOMI	GGGCCC	1 cut(s)	474
PspPI	GGNCC	5 cut(s)	235, 392, 432, 474, 475
PstI	CTGCAG	1 cut(s)	860
PvuII	CAGCTG	2 cut(s)	761, 881
RsaI	GTAC	2 cut(s)	512, 868
RsaNI	GTAC	2 cut(s)	511, 867
SacI	GAGCTC	1 cut(s)	786
SaqAI	TTAA	3 cut(s)	276, 441, 518
SatI	GCNGC	3 cut(s)	162, 501, 879
Sau3AI	GATC	1 cut(s)	657
Sau96I	GGNCC	5 cut(s)	235, 392, 432, 474, 475
ScaI	AGTACT	1 cut(s)	512
SchI	GAGTC	2 cut(s)	147, 538
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	4 cut(s)	220, 478, 732, 786
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	856
SinI	GGWCC	1 cut(s)	432
SmlI	CTYRAG	2 cut(s)	526, 731
SmoI	CTYRAG	2 cut(s)	526, 731
Sse9I	AATT	2 cut(s)	798, 842
SsiI	CCGC	2 cut(s)	59, 447
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	2 cut(s)	558, 620
SstI	GAGCTC	1 cut(s)	786
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	3 cut(s)	12, 537, 557
TaaI	ACNGT	3 cut(s)	85, 178, 290
TaiI	ACGT	2 cut(s)	604, 877
TaqI	TCGA	3 cut(s)	204, 532, 780
TasI	AATT	2 cut(s)	798, 842
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	3 cut(s)	254, 638, 748
Tru1I	TTAA	3 cut(s)	276, 441, 518
Tru9I	TTAA	3 cut(s)	276, 441, 518
TscAI	CASTG	2 cut(s)	434, 659
TseFI	GTSAC	2 cut(s)	647, 847
TseI	GCWGC	3 cut(s)	161, 500, 878
Tsp45I	GTSAC	2 cut(s)	647, 847
TspDTI	ATGAA	4 cut(s)	77, 105, 131, 292
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	434, 659
Van91I	CCANNNNNTGG	2 cut(s)	484, 679
VneI	GTGCAC	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	432
XmaJI	CCTAGG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	558, 620
ZrmI	AGTACT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.