Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004133.1

Orthogroup ID

OG0008938

Physical Location & Seq

Genomic Coordinates Reverse (-)

71322 .. 77567

Gene Structure 6246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004133.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggttttagccaaggaagataacttggtctatggcttcaagctttcctcggttggggcggggaagattacggagccaaatacggttcatgaaccaagtggcatagacttggctatgaagctccactacctaagaggagtctacttcttcagtagtgaggcagccgaagggctaaccgtcttgaacataaaggaagtcatgttcgactggttgtgtgcacactttcgggaaatgggccggtttcggaggtcagaatcctccgggcggccgtatgttaagtgtaacgactgtggggcgaggttcattgaggctcagtctgataagacccttgaagaatggttagggatggactggtctctccacaagctacttgtttctaaccaaatcattggccctgagctgttcttctctcctcctgttctcttccagtggacccgttttaagtgcggaggagtgtcatgtcggtactcacctttcctcgacaaacataggagcacaaccccggaggttcacggttatcgacaccgtgggatccctaggaatctatgcgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009555 GO:0009579 GO:0009987 GO:0010025 GO:0010166 GO:0016020 GO:0016053 GO:0019752 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0034357 GO:0042651 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0055035 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

184

Amino Acids

21.04

Weight (kDa)

8.53

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23840 AT4G13840
fragaria_vesca	FvH4_4g13360
malus_domestica	MD04G1016700.v1.1 MD04G1016900.v1.1
prunus_persica	Prupe.1G163500_v2.0.a1
pyrus_communis	pycom04g01280 pycom04g01300
rosa_chinensis	RchiOBHm_Chr4g0413701
rosa_laevigata	RLG00000008200
rosa_multiflora	Rmu_co8063286.1_g000001 Rmu_co8298563.1_g000001 Rmu_sc0004133.1_g000007 Rmu_sc0033890.1_g000002
rosa_roxburghii	Rroxscaffold_5G00357640
rosa_rugosa	Rorug04G0122700
rosa_samantha	Rh4AG181900 Rh4BG181000 Rh4BG181100 Rh4CG193100 Rh4DG177500
rosa_wichuraiana	Rw4G015220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	3 cut(s)	59, 265, 447
AclWI	GGATC	2 cut(s)	526, 539
AcoI	YGGCCR	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	133
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	2 cut(s)	54, 264
AgsI	TTSAA	3 cut(s)	40, 184, 332
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
AluBI	AGCT	4 cut(s)	43, 121, 367, 400
AluI	AGCT	4 cut(s)	43, 121, 367, 400
Alw21I	GWGCWC	2 cut(s)	220, 497
Alw26I	GTCTC	1 cut(s)	360
Alw44I	GTGCAC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	526, 539
AoxI	GGCC	3 cut(s)	235, 266, 391
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	161
AspA2I	CCTAGG	1 cut(s)	536
AspS9I	GGNCC	3 cut(s)	235, 392, 432
AsuC2I	CCSGG	2 cut(s)	262, 503
AsuHPI	GGTGA	1 cut(s)	462
AvaII	GGWCC	1 cut(s)	432
AvrII	CCTAGG	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	531
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
Bbv12I	GWGCWC	2 cut(s)	220, 497
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	1 cut(s)	253
BcnI	CCSGG	2 cut(s)	262, 503
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	2 cut(s)	537, 553
BisI	GCNGC	2 cut(s)	162, 266
BlnI	CCTAGG	1 cut(s)	536
BlsI	GCNGC	2 cut(s)	163, 267
Bme1390I	CCNGG	2 cut(s)	262, 503
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	3 cut(s)	235, 392, 432
BmiI	GGNNCC	3 cut(s)	75, 434, 533
BmrFI	CCNGG	2 cut(s)	262, 503
Bpu10I	CCTNAGC	1 cut(s)	396
BpuMI	CCSGG	2 cut(s)	262, 503
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	5 cut(s)	12, 48, 501, 526, 536
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 264
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	3 cut(s)	212, 356, 427
BseDI	CCNNGG	5 cut(s)	12, 48, 501, 526, 536
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	54, 264
BseMII	CTCAG	2 cut(s)	326, 387
BseNI	ACTGG	3 cut(s)	212, 356, 427
BseRI	GAGGAG	3 cut(s)	150, 402, 465
BseSI	GKGCMC	1 cut(s)	220
BseX3I	CGGCCG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	3 cut(s)	237, 268, 393
BsiEI	CGRYCG	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	220, 497
BsiSI	CCGG	3 cut(s)	238, 261, 503
BslI	CCNNNNNNNGG	2 cut(s)	54, 264
BsmAI	GTCTC	1 cut(s)	360
BsnI	GGCC	3 cut(s)	237, 268, 393
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	220, 497
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	3 cut(s)	59, 265, 447
BspANI	GGCC	3 cut(s)	237, 268, 393
BspCNI	CTCAG	2 cut(s)	325, 388
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	75, 434, 533
BspPI	GGATC	2 cut(s)	526, 539
BspTNI	GGTCTC	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	212, 356, 427
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	5 cut(s)	12, 48, 501, 526, 536
BssMI	GATC	1 cut(s)	531
BssT1I	CCWWGG	2 cut(s)	12, 536
Bst4CI	ACNGT	5 cut(s)	85, 178, 290, 515, 527
Bst6I	CTCTTC	1 cut(s)	428
BstDEI	CTNAG	3 cut(s)	131, 312, 396
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	1 cut(s)	531
BstMCI	CGRYCG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	260, 501
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	531
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	531
BstZI	CGGCCG	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	237, 268, 393
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	434
CciI	TCATGA	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	235, 392, 432
CseI	GACGC	1 cut(s)	538
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	3 cut(s)	89, 199, 459
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	3 cut(s)	131, 312, 396
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	266
EagI	CGGCCG	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EclXI	CGGCCG	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	12, 536
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	432
Eco52I	CGGCCG	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	12, 536
ErhI	CCWWGG	2 cut(s)	12, 536
FaeI	CATG	3 cut(s)	92, 202, 462
FatI	CATG	3 cut(s)	88, 198, 458
FauI	CCCGC	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	162, 266
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	162, 266
FspBI	CTAG	2 cut(s)	537, 553
GluI	GCNGC	2 cut(s)	162, 266
HaeIII	GGCC	3 cut(s)	237, 268, 393
HapII	CCGG	3 cut(s)	238, 261, 503
HgaI	GACGC	1 cut(s)	538
Hin1II	CATG	3 cut(s)	92, 202, 462
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	138, 254, 541
HpaII	CCGG	3 cut(s)	238, 261, 503
HphI	GGTGA	1 cut(s)	462
Hpy166II	GTNNAC	4 cut(s)	142, 218, 432, 511
Hpy188I	TCNGA	3 cut(s)	246, 253, 319
Hpy188III	TCNNGA	3 cut(s)	89, 181, 227
Hpy8I	GTNNAC	4 cut(s)	142, 218, 432, 511
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	5 cut(s)	85, 178, 290, 515, 527
HpyCH4V	TGCA	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	131, 312, 396
Hsp92II	CATG	3 cut(s)	92, 202, 462
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	3 cut(s)	73, 126, 492
LpnPI	CCDG	8 cut(s)	193, 251, 274, 337, 408, 429, 440, 516
Lsp1109I	GCAGC	1 cut(s)	173
MaeI	CTAG	2 cut(s)	537, 553
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MboII	GAAGA	6 cut(s)	29, 76, 139, 344, 397, 415
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	2 cut(s)	220, 497
MlyI	GAGTC	1 cut(s)	147
MseI	TTAA	2 cut(s)	276, 441
MspI	CCGG	3 cut(s)	238, 261, 503
MspR9I	CCNGG	2 cut(s)	262, 503
NciI	CCSGG	2 cut(s)	262, 503
NdeII	GATC	1 cut(s)	531
NlaIII	CATG	3 cut(s)	92, 202, 462
NlaIV	GGNNCC	3 cut(s)	75, 434, 533
PagI	TCATGA	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	254, 541
PkrI	GCNGC	2 cut(s)	163, 267
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PspN4I	GGNNCC	3 cut(s)	75, 434, 533
PspPI	GGNCC	3 cut(s)	235, 392, 432
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	276, 441
SatI	GCNGC	2 cut(s)	162, 266
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	3 cut(s)	235, 392, 432
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	262, 503
SduI	GDGCHC	2 cut(s)	220, 497
SetI	ASST	9 cut(s)	45, 123, 132, 251, 302, 369, 402, 475, 510
SinI	GGWCC	1 cut(s)	432
SsiI	CCGC	3 cut(s)	59, 265, 447
SspMI	CTAG	2 cut(s)	537, 553
StyD4I	CCNGG	2 cut(s)	260, 501
StyI	CCWWGG	2 cut(s)	12, 536
TaaI	ACNGT	5 cut(s)	85, 178, 290, 515, 527
TaqI	TCGA	3 cut(s)	204, 480, 520
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	2 cut(s)	254, 541
Tru1I	TTAA	2 cut(s)	276, 441
Tru9I	TTAA	2 cut(s)	276, 441
TscAI	CASTG	1 cut(s)	434
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	4 cut(s)	77, 105, 131, 292
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	432
XmaJI	CCTAGG	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	537, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.